Wall clock time and date at job start Tue Mar 31 2020 05:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35270 * 126.70534 * 2 1 4 4 C 1.41928 * 103.95752 * 180.02562 * 3 2 1 5 5 O 1.35717 * 126.87919 * 180.25890 * 4 3 2 6 6 C 1.42893 * 116.99907 * 179.71238 * 5 4 3 7 7 C 1.50700 * 109.46958 * 180.02562 * 6 5 4 8 8 O 1.21271 * 120.00226 * 354.92642 * 7 6 5 9 9 N 1.34784 * 119.99695 * 174.92010 * 7 6 5 10 10 C 1.46506 * 119.99495 * 185.39577 * 9 7 6 11 11 C 1.50699 * 109.46808 * 90.00507 * 10 9 7 12 12 H 1.08004 * 120.00542 * 359.97438 * 11 10 9 13 13 C 1.37884 * 120.00033 * 179.97438 * 11 10 9 14 14 N 1.31512 * 119.99564 * 359.97438 * 13 11 10 15 15 Si 1.86789 * 120.00080 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.47289 * 90.00174 * 15 13 11 17 17 H 1.48508 * 109.47254 * 209.99853 * 15 13 11 18 18 H 1.48502 * 109.47615 * 329.99860 * 15 13 11 19 19 C 1.46492 * 120.00109 * 5.39739 * 9 7 6 20 20 C 1.53005 * 109.46955 * 124.24627 * 19 9 7 21 21 C 1.53002 * 109.47156 * 244.24102 * 19 9 7 22 22 N 1.30617 * 106.24466 * 0.02562 * 4 3 2 23 23 O 1.20920 * 111.49739 * 359.97438 * 22 4 3 24 24 H 1.09000 * 109.46827 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46599 * 299.94426 * 1 2 3 26 26 H 1.09003 * 109.47370 * 59.94627 * 1 2 3 27 27 H 1.07997 * 128.02272 * 0.05196 * 3 2 1 28 28 H 1.08999 * 109.47425 * 300.00626 * 6 5 4 29 29 H 1.09001 * 109.47208 * 60.00449 * 6 5 4 30 30 H 1.08995 * 109.46954 * 209.99766 * 10 9 7 31 31 H 1.08998 * 109.47229 * 330.00210 * 10 9 7 32 32 H 0.97004 * 119.99759 * 179.97438 * 14 13 11 33 33 H 1.08997 * 109.47750 * 4.24360 * 19 9 7 34 34 H 1.08998 * 109.46868 * 55.63922 * 20 19 9 35 35 H 1.09007 * 109.47196 * 175.63716 * 20 19 9 36 36 H 1.09004 * 109.46946 * 295.63700 * 20 19 9 37 37 H 1.09007 * 109.46841 * 64.59422 * 21 19 9 38 38 H 1.08998 * 109.47263 * 184.58408 * 21 19 9 39 39 H 1.08995 * 109.47782 * 304.58985 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3156 1.0845 0.0000 4 6 3.6245 0.5357 -0.0006 5 8 4.7953 1.2219 0.0041 6 6 5.9988 0.4514 0.0087 7 6 7.1879 1.3772 0.0141 8 8 7.0241 2.5752 -0.0789 9 7 8.4334 0.8737 0.1224 10 6 9.5803 1.7768 0.2467 11 6 9.8403 2.0609 1.7037 12 1 9.2137 1.6138 2.4613 13 6 10.8782 2.8916 2.0696 14 7 11.6415 3.4355 1.1471 15 14 11.2000 3.2442 3.8754 16 1 12.1459 2.2352 4.4160 17 1 11.7883 4.6004 4.0178 18 1 9.9217 3.1777 4.6284 19 6 8.6403 -0.5766 0.1158 20 6 9.6243 -0.9462 -0.9961 21 6 9.2083 -1.0169 1.4665 22 7 3.4765 -0.7621 -0.0015 23 8 2.3085 -1.0749 -0.0010 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5130 0.8905 26 1 -0.3634 0.5147 -0.8895 27 1 2.0311 2.1263 0.0008 28 1 6.0242 -0.1774 0.8986 29 1 6.0312 -0.1771 -0.8813 30 1 10.4603 1.3093 -0.1949 31 1 9.3655 2.7105 -0.2729 32 1 12.3714 4.0202 1.4045 33 1 7.6889 -1.0786 -0.0593 34 1 10.5492 -0.3848 -0.8642 35 1 9.8381 -2.0142 -0.9518 36 1 9.1865 -0.7031 -1.9643 37 1 8.4732 -0.8277 2.2488 38 1 9.4385 -2.0818 1.4342 39 1 10.1177 -0.4549 1.6790 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701330732.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:04 Heat of formation + Delta-G solvation = -6.653505 kcal Electronic energy + Delta-G solvation = -22284.421164 eV Core-core repulsion = 18810.632342 eV Total energy + Delta-G solvation = -3473.788822 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.95664 -39.68975 -38.24347 -35.98683 -33.97325 -32.90176 -32.54954 -30.92821 -29.25699 -28.03185 -26.85078 -26.48921 -23.47565 -22.96622 -21.55862 -21.06229 -18.36318 -17.93708 -17.90871 -16.82406 -16.55372 -16.43095 -15.84351 -15.22463 -14.54790 -14.10063 -14.03036 -13.91119 -13.59458 -13.54353 -13.39148 -12.89130 -12.67110 -12.61021 -12.34629 -11.76129 -11.57636 -11.50217 -11.29084 -11.13012 -10.97261 -10.88743 -10.60407 -10.41069 -10.04531 -9.62548 -9.58406 -9.20661 -9.01119 -8.44149 -7.74468 -6.06067 -4.09823 1.29970 2.22694 2.54812 3.00367 3.23782 3.28998 3.36290 3.41106 3.90239 4.14491 4.42985 4.64248 4.81707 4.85625 5.03407 5.06568 5.12584 5.21938 5.24898 5.28463 5.35597 5.50959 5.51838 5.59691 5.75716 5.99583 6.10604 6.21287 6.31241 6.55177 6.90269 6.95549 7.12413 7.42327 7.49771 7.90433 8.17864 8.21160 8.30208 8.83505 8.98775 9.54262 11.02123 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.022623 B = 0.003908 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.386078 B = 7163.025155 C = 7688.842843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.015 4.015 3 C -0.233 4.233 4 C 0.217 3.783 5 O -0.255 6.255 6 C 0.046 3.954 7 C 0.510 3.490 8 O -0.520 6.520 9 N -0.587 5.587 10 C 0.246 3.754 11 C -0.524 4.524 12 H 0.059 0.941 13 C 0.061 3.939 14 N -0.894 5.894 15 Si 0.896 3.104 16 H -0.280 1.280 17 H -0.285 1.285 18 H -0.274 1.274 19 C 0.130 3.870 20 C -0.162 4.162 21 C -0.162 4.162 22 N -0.414 5.414 23 O 0.096 5.904 24 H 0.084 0.916 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.178 0.822 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.040 0.960 31 H 0.044 0.956 32 H 0.263 0.737 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.052 0.948 37 H 0.050 0.950 38 H 0.052 0.948 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.601 -11.069 -3.294 21.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.078 4.078 3 C -0.255 4.255 4 C 0.019 3.981 5 O -0.159 6.159 6 C -0.033 4.033 7 C 0.295 3.705 8 O -0.396 6.396 9 N -0.321 5.321 10 C 0.127 3.873 11 C -0.563 4.563 12 H 0.077 0.923 13 C -0.141 4.141 14 N -0.533 5.533 15 Si 0.724 3.276 16 H -0.206 1.206 17 H -0.211 1.211 18 H -0.199 1.199 19 C 0.026 3.974 20 C -0.220 4.220 21 C -0.220 4.220 22 N -0.143 5.143 23 O 0.036 5.964 24 H 0.103 0.897 25 H 0.110 0.890 26 H 0.110 0.890 27 H 0.196 0.804 28 H 0.108 0.892 29 H 0.106 0.894 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -16.582 -10.995 -3.374 20.180 hybrid contribution 0.149 0.791 1.060 1.330 sum -16.433 -10.204 -2.314 19.481 Atomic orbital electron populations 1.20357 0.83642 1.04756 1.04304 1.24313 0.96404 0.85742 1.01389 1.21803 0.88452 1.01714 1.13533 1.22150 0.88840 0.87908 0.99192 1.86328 1.10068 1.30955 1.88556 1.22713 0.82677 0.94195 1.03705 1.19614 0.83645 0.88551 0.78726 1.90712 1.84921 1.15287 1.48656 1.48261 1.06769 1.06646 1.70410 1.19335 0.81569 0.88945 0.97422 1.21444 1.14083 1.28733 0.92048 0.92271 1.24927 0.95971 0.95469 0.97715 1.69930 1.18844 1.31807 1.32693 0.86520 0.78376 0.77662 0.85030 1.20629 1.21091 1.19910 1.21059 0.98578 0.81428 0.96356 1.22155 1.00839 1.01220 0.97779 1.22207 1.03658 1.00138 0.95993 1.74160 0.97687 1.14378 1.28046 1.84785 1.10384 1.31969 1.69252 0.89731 0.88980 0.88983 0.80441 0.89238 0.89386 0.94235 0.93748 0.92704 0.91107 0.90803 0.92003 0.92873 0.93039 0.92931 0.89406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.33 10.45 36.01 0.38 0.04 16 2 C -0.01 -0.14 7.48 -35.36 -0.26 -0.41 16 3 C -0.23 -2.79 11.10 -39.23 -0.44 -3.23 16 4 C 0.22 3.40 8.01 -16.66 -0.13 3.27 16 5 O -0.25 -4.74 9.74 -38.72 -0.38 -5.12 16 6 C 0.05 0.81 4.47 36.01 0.16 0.97 16 7 C 0.51 11.27 7.73 -10.98 -0.08 11.19 16 8 O -0.52 -13.87 16.06 -14.30 -0.23 -14.10 16 9 N -0.59 -12.57 2.39 -167.47 -0.40 -12.97 16 10 C 0.25 6.34 4.73 -5.19 -0.02 6.32 16 11 C -0.52 -14.57 7.71 -34.44 -0.27 -14.84 16 12 H 0.06 1.64 7.59 -52.48 -0.40 1.25 16 13 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 14 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 15 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 19 C 0.13 2.16 3.12 -67.93 -0.21 1.95 16 20 C -0.16 -2.41 9.19 37.16 0.34 -2.07 16 21 C -0.16 -2.67 8.74 37.16 0.32 -2.35 16 22 N -0.41 -6.16 11.54 30.38 0.35 -5.81 16 23 O 0.10 1.18 11.19 17.07 0.19 1.37 16 24 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.18 1.74 8.06 -52.49 -0.42 1.32 16 28 H 0.09 1.45 7.85 -51.93 -0.41 1.04 16 29 H 0.09 1.34 7.72 -51.93 -0.40 0.94 16 30 H 0.04 1.02 6.13 -51.93 -0.32 0.70 16 31 H 0.04 1.31 7.35 -51.93 -0.38 0.93 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.07 1.00 5.85 -51.93 -0.30 0.70 16 34 H 0.07 1.25 6.34 -51.93 -0.33 0.92 16 35 H 0.06 0.75 8.14 -51.92 -0.42 0.32 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.05 0.86 8.14 -51.92 -0.42 0.44 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.09 1.71 6.60 -51.93 -0.34 1.37 16 LS Contribution 332.07 15.07 5.00 5.00 Total: -1.00 -34.36 332.07 -5.46 -39.82 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -5.40 Total: -1.85 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -0.31 Total: 2.48 kcal Atomic # 7 Polarization: -45.07 SS G_CDS: 0.69 Total: -44.38 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: -0.42 Total: -17.85 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.36 -5.46 -39.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701330732.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.163 kcal (2) G-P(sol) polarization free energy of solvation -34.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds