Wall clock time and date at job start Tue Mar 31 2020 06:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34224 * 117.00256 * 2 1 4 4 O 1.20827 * 120.00127 * 0.02562 * 3 2 1 5 5 C 1.50710 * 120.00123 * 179.97438 * 3 2 1 6 6 N 1.46498 * 109.47359 * 180.02562 * 5 3 2 7 7 C 1.36938 * 119.99733 * 270.00703 * 6 5 3 8 8 H 1.07997 * 119.99833 * 142.68991 * 7 6 5 9 9 C 1.38810 * 119.99653 * 322.67773 * 7 6 5 10 10 N 1.31624 * 119.99828 * 157.24802 * 9 7 6 11 11 Si 1.86797 * 120.00418 * 337.25004 * 9 7 6 12 12 H 1.48503 * 109.47188 * 95.38579 * 11 9 7 13 13 H 1.48501 * 109.47238 * 215.38806 * 11 9 7 14 14 H 1.48502 * 109.46791 * 335.38744 * 11 9 7 15 15 C 1.46502 * 120.00114 * 89.99856 * 6 5 3 16 16 C 1.50702 * 109.47159 * 271.79909 * 15 6 5 17 17 N 1.30259 * 125.62027 * 89.85303 * 16 15 6 18 18 C 1.34473 * 108.70224 * 179.97438 * 17 16 15 19 19 C 1.34320 * 107.66907 * 0.02562 * 18 17 16 20 20 C 1.50705 * 126.44662 * 180.02562 * 19 18 17 21 21 C 1.52991 * 109.47588 * 119.99696 * 20 19 18 22 22 C 1.52998 * 109.47152 * 240.00063 * 20 19 18 23 23 O 1.33965 * 125.62059 * 270.14555 * 16 15 6 24 24 H 1.09000 * 109.47073 * 59.99461 * 1 2 3 25 25 H 1.08997 * 109.47767 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47279 * 299.99954 * 1 2 3 27 27 H 1.08995 * 109.46858 * 60.00054 * 5 3 2 28 28 H 1.08997 * 109.46672 * 300.00597 * 5 3 2 29 29 H 0.96997 * 119.99828 * 179.97438 * 10 9 7 30 30 H 1.08998 * 109.46844 * 151.80185 * 15 6 5 31 31 H 1.08995 * 109.46715 * 31.79467 * 15 6 5 32 32 H 1.08004 * 126.16375 * 180.02562 * 18 17 16 33 33 H 1.09001 * 109.46592 * 359.97438 * 20 19 18 34 34 H 1.08999 * 109.46954 * 300.00379 * 21 20 19 35 35 H 1.08995 * 109.47769 * 180.02562 * 21 20 19 36 36 H 1.09000 * 109.47397 * 59.99859 * 21 20 19 37 37 H 1.09001 * 109.47079 * 299.99343 * 22 20 19 38 38 H 1.09001 * 109.47465 * 59.99664 * 22 20 19 39 39 H 1.09000 * 109.47299 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9819 2.6796 0.0011 7 6 4.1763 3.3365 -1.1846 8 1 3.8920 4.3739 -1.2801 9 6 4.7391 2.6688 -2.2637 10 7 4.5305 3.1039 -3.4883 11 14 5.7926 1.1529 -1.9779 12 1 4.9567 -0.0657 -2.1247 13 1 6.8940 1.1206 -2.9734 14 1 6.3646 1.1987 -0.6082 15 6 4.1891 3.3818 1.2701 16 6 2.8874 3.9882 1.7270 17 7 2.0026 3.4041 2.4838 18 6 0.9764 4.2507 2.6797 19 6 1.2522 5.3859 2.0168 20 6 0.3860 6.6175 1.9514 21 6 1.1523 7.8110 2.5248 22 6 0.0138 6.9024 0.4949 23 8 2.4469 5.2149 1.4174 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 3.9564 0.7805 -0.8891 28 1 3.9557 0.7807 0.8908 29 1 4.9241 2.6375 -4.2422 30 1 4.9288 4.1704 1.1323 31 1 4.5450 2.6768 2.0213 32 1 0.0901 4.0534 3.2646 33 1 -0.5215 6.4546 2.5328 34 1 1.4174 7.6080 3.5623 35 1 0.5257 8.7017 2.4779 36 1 2.0596 7.9737 1.9431 37 1 0.9211 7.0651 -0.0868 38 1 -0.5322 6.0520 0.0864 39 1 -0.6130 7.7929 0.4476 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746455790.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:17 Heat of formation + Delta-G solvation = -38.237524 kcal Electronic energy + Delta-G solvation = -23400.121476 eV Core-core repulsion = 19924.963068 eV Total energy + Delta-G solvation = -3475.158408 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.56010 -39.50420 -36.50317 -35.47528 -35.04067 -33.91588 -31.97049 -30.01559 -28.28677 -27.09562 -26.61248 -26.00191 -22.76916 -22.09121 -21.08865 -20.32167 -19.71083 -17.29010 -16.86512 -16.34713 -16.18899 -15.72107 -15.45884 -15.10664 -14.95293 -14.39352 -14.00341 -13.58860 -13.02891 -12.99895 -12.84793 -12.75433 -12.65261 -12.17137 -12.11484 -11.63061 -11.57091 -11.34950 -11.15082 -11.05431 -10.93764 -10.70164 -10.52660 -10.30744 -10.06864 -9.80887 -9.79246 -9.57885 -8.78819 -8.02766 -7.28662 -6.18260 -3.66350 2.15487 3.15571 3.19708 3.32835 3.35454 3.38661 3.40383 3.49919 4.33015 4.69701 4.81403 4.89063 5.05888 5.16192 5.16771 5.47220 5.51041 5.58908 5.60738 5.66354 5.68560 5.78167 5.86462 5.91332 5.94247 5.96542 6.03406 6.07323 6.23180 6.26364 6.37243 6.49040 6.71607 7.02409 7.16618 7.71119 8.15379 8.49827 8.61341 8.80194 9.44900 9.74053 10.95500 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.016118 B = 0.006777 C = 0.005690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.768995 B = 4130.926049 C = 4920.127689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.378 6.378 3 C 0.429 3.571 4 O -0.481 6.481 5 C 0.139 3.861 6 N -0.557 5.557 7 C -0.283 4.283 8 H 0.084 0.916 9 C 0.045 3.955 10 N -0.882 5.882 11 Si 0.867 3.133 12 H -0.279 1.279 13 H -0.293 1.293 14 H -0.260 1.260 15 C 0.231 3.769 16 C 0.205 3.795 17 N -0.492 5.492 18 C -0.041 4.041 19 C -0.058 4.058 20 C -0.003 4.003 21 C -0.146 4.146 22 C -0.147 4.147 23 O -0.189 6.189 24 H 0.053 0.947 25 H 0.088 0.912 26 H 0.054 0.946 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.268 0.732 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.166 0.834 33 H 0.093 0.907 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.799 1.286 10.834 12.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.296 6.296 3 C 0.267 3.733 4 O -0.364 6.364 5 C 0.011 3.989 6 N -0.277 5.277 7 C -0.411 4.411 8 H 0.102 0.898 9 C -0.158 4.158 10 N -0.520 5.520 11 Si 0.696 3.304 12 H -0.207 1.207 13 H -0.220 1.220 14 H -0.184 1.184 15 C 0.103 3.897 16 C -0.005 4.005 17 N -0.221 5.221 18 C -0.180 4.180 19 C -0.112 4.112 20 C -0.022 4.022 21 C -0.204 4.204 22 C -0.205 4.205 23 O -0.075 6.075 24 H 0.072 0.928 25 H 0.106 0.894 26 H 0.072 0.928 27 H 0.113 0.887 28 H 0.107 0.893 29 H 0.078 0.922 30 H 0.114 0.886 31 H 0.107 0.893 32 H 0.183 0.817 33 H 0.111 0.889 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.861 1.037 10.807 12.338 hybrid contribution -0.284 -0.211 -0.427 0.554 sum -6.144 0.826 10.380 12.091 Atomic orbital electron populations 1.22997 0.78683 1.02132 1.01746 1.86570 1.21936 1.35808 1.85239 1.25994 0.93885 0.80962 0.72446 1.90587 1.66500 1.36155 1.43194 1.21338 0.85767 0.88709 1.03132 1.43982 1.73427 1.07713 1.02533 1.18770 1.37338 0.97919 0.87076 0.89814 1.25413 0.97433 0.98034 0.94907 1.69896 1.42610 1.41592 0.97901 0.87071 0.81432 0.83039 0.78884 1.20702 1.21986 1.18371 1.19543 0.86003 0.96066 0.88116 1.28086 0.99728 0.79437 0.93225 1.70289 1.02132 1.31376 1.18280 1.22738 0.99958 0.90619 1.04674 1.23106 0.87976 0.99593 1.00498 1.19582 0.95118 0.89161 0.98304 1.21855 1.00743 0.96743 1.01018 1.21846 1.02247 1.01519 0.94860 1.84392 1.30274 1.34993 1.57849 0.92774 0.89370 0.92766 0.88747 0.89334 0.92215 0.88586 0.89322 0.81700 0.88901 0.92518 0.92032 0.91989 0.91803 0.92213 0.92162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 10.56 101.05 1.07 1.69 16 2 O -0.38 -7.52 10.56 -39.24 -0.41 -7.94 16 3 C 0.43 9.70 8.02 36.01 0.29 9.99 16 4 O -0.48 -12.13 13.95 -18.75 -0.26 -12.40 16 5 C 0.14 3.02 5.15 -5.19 -0.03 2.99 16 6 N -0.56 -12.97 1.63 -175.98 -0.29 -13.25 16 7 C -0.28 -7.71 9.90 -15.06 -0.15 -7.86 16 8 H 0.08 2.55 8.06 -52.49 -0.42 2.12 16 9 C 0.04 1.24 5.30 -17.43 -0.09 1.14 16 10 N -0.88 -26.06 13.97 55.49 0.78 -25.29 16 11 Si 0.87 20.26 25.06 -169.99 -4.26 16.00 16 12 H -0.28 -6.36 6.66 56.52 0.38 -5.98 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 15 C 0.23 4.56 6.33 -5.19 -0.03 4.53 16 16 C 0.21 4.30 6.62 -12.94 -0.09 4.21 16 17 N -0.49 -10.14 10.45 -11.10 -0.12 -10.26 16 18 C -0.04 -0.75 11.78 -17.78 -0.21 -0.96 16 19 C -0.06 -1.03 5.89 -35.69 -0.21 -1.24 16 20 C 0.00 -0.04 3.33 -91.77 -0.31 -0.34 16 21 C -0.15 -1.70 9.17 37.15 0.34 -1.36 16 22 C -0.15 -2.06 9.18 37.16 0.34 -1.72 16 23 O -0.19 -3.98 10.78 5.36 0.06 -3.92 16 24 H 0.05 0.90 8.13 -51.93 -0.42 0.47 16 25 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.05 0.87 8.13 -51.93 -0.42 0.44 16 27 H 0.10 2.16 3.27 -51.93 -0.17 1.99 16 28 H 0.09 1.60 7.91 -51.93 -0.41 1.19 16 29 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.10 1.76 8.02 -51.93 -0.42 1.34 16 31 H 0.09 1.47 7.92 -51.93 -0.41 1.06 16 32 H 0.17 2.49 8.06 -52.48 -0.42 2.07 16 33 H 0.09 1.04 8.11 -51.93 -0.42 0.62 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 331.43 15.07 4.99 4.99 Total: -1.00 -33.44 331.43 -4.23 -37.67 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -5.64 Total: 3.32 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: 0.92 Total: 11.07 kcal Atomic # 7 Polarization: -49.17 SS G_CDS: 0.37 Total: -48.80 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -0.62 Total: -24.25 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -4.26 Total: 16.00 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.44 -4.23 -37.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746455790.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.568 kcal (2) G-P(sol) polarization free energy of solvation -33.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds