Wall clock time and date at job start Tue Mar 31 2020 06:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34224 * 117.00256 * 2 1 4 4 O 1.20827 * 120.00127 * 0.02562 * 3 2 1 5 5 C 1.50710 * 120.00123 * 179.97438 * 3 2 1 6 6 N 1.46498 * 109.47359 * 180.02562 * 5 3 2 7 7 C 1.36938 * 119.99733 * 270.00703 * 6 5 3 8 8 H 1.07997 * 119.99833 * 142.68991 * 7 6 5 9 9 C 1.38810 * 119.99653 * 322.67773 * 7 6 5 10 10 N 1.31624 * 119.99828 * 157.24802 * 9 7 6 11 11 Si 1.86797 * 120.00418 * 337.25004 * 9 7 6 12 12 H 1.48503 * 109.47188 * 95.38579 * 11 9 7 13 13 H 1.48501 * 109.47238 * 215.38806 * 11 9 7 14 14 H 1.48502 * 109.46791 * 335.38744 * 11 9 7 15 15 C 1.46502 * 120.00114 * 89.99856 * 6 5 3 16 16 C 1.50702 * 109.47159 * 271.79909 * 15 6 5 17 17 N 1.30259 * 125.62027 * 89.85303 * 16 15 6 18 18 C 1.34473 * 108.70224 * 179.97438 * 17 16 15 19 19 C 1.34320 * 107.66907 * 0.02562 * 18 17 16 20 20 C 1.50705 * 126.44662 * 180.02562 * 19 18 17 21 21 C 1.52991 * 109.47588 * 119.99696 * 20 19 18 22 22 C 1.52998 * 109.47152 * 240.00063 * 20 19 18 23 23 O 1.33965 * 125.62059 * 270.14555 * 16 15 6 24 24 H 1.09000 * 109.47073 * 59.99461 * 1 2 3 25 25 H 1.08997 * 109.47767 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47279 * 299.99954 * 1 2 3 27 27 H 1.08995 * 109.46858 * 60.00054 * 5 3 2 28 28 H 1.08997 * 109.46672 * 300.00597 * 5 3 2 29 29 H 0.96997 * 119.99828 * 179.97438 * 10 9 7 30 30 H 1.08998 * 109.46844 * 151.80185 * 15 6 5 31 31 H 1.08995 * 109.46715 * 31.79467 * 15 6 5 32 32 H 1.08004 * 126.16375 * 180.02562 * 18 17 16 33 33 H 1.09001 * 109.46592 * 359.97438 * 20 19 18 34 34 H 1.08999 * 109.46954 * 300.00379 * 21 20 19 35 35 H 1.08995 * 109.47769 * 180.02562 * 21 20 19 36 36 H 1.09000 * 109.47397 * 59.99859 * 21 20 19 37 37 H 1.09001 * 109.47079 * 299.99343 * 22 20 19 38 38 H 1.09001 * 109.47465 * 59.99664 * 22 20 19 39 39 H 1.09000 * 109.47299 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9819 2.6796 0.0011 7 6 4.1763 3.3365 -1.1846 8 1 3.8920 4.3739 -1.2801 9 6 4.7391 2.6688 -2.2637 10 7 4.5305 3.1039 -3.4883 11 14 5.7926 1.1529 -1.9779 12 1 4.9567 -0.0657 -2.1247 13 1 6.8940 1.1206 -2.9734 14 1 6.3646 1.1987 -0.6082 15 6 4.1891 3.3818 1.2701 16 6 2.8874 3.9882 1.7270 17 7 2.0026 3.4041 2.4838 18 6 0.9764 4.2507 2.6797 19 6 1.2522 5.3859 2.0168 20 6 0.3860 6.6175 1.9514 21 6 1.1523 7.8110 2.5248 22 6 0.0138 6.9024 0.4949 23 8 2.4469 5.2149 1.4174 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 3.9564 0.7805 -0.8891 28 1 3.9557 0.7807 0.8908 29 1 4.9241 2.6375 -4.2422 30 1 4.9288 4.1704 1.1323 31 1 4.5450 2.6768 2.0213 32 1 0.0901 4.0534 3.2646 33 1 -0.5215 6.4546 2.5328 34 1 1.4174 7.6080 3.5623 35 1 0.5257 8.7017 2.4779 36 1 2.0596 7.9737 1.9431 37 1 0.9211 7.0651 -0.0868 38 1 -0.5322 6.0520 0.0864 39 1 -0.6130 7.7929 0.4476 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746455790.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:16 Heat of formation + Delta-G solvation = -61.920066 kcal Electronic energy + Delta-G solvation = -23401.148428 eV Core-core repulsion = 19924.963068 eV Total energy + Delta-G solvation = -3476.185360 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.05502 -41.20287 -38.19014 -36.91892 -36.52380 -35.45167 -33.98957 -31.57760 -29.88120 -28.14168 -28.05246 -27.72800 -24.47602 -23.51569 -22.60593 -22.00973 -21.10627 -19.16161 -18.63260 -17.98339 -17.67986 -17.33169 -17.08517 -16.80314 -16.29192 -15.78517 -15.51938 -15.13780 -14.72084 -14.51443 -14.22248 -14.16287 -14.11356 -13.93074 -13.30011 -13.13705 -13.00140 -12.81513 -12.59046 -12.41046 -12.22691 -12.13115 -12.06865 -12.01650 -11.70693 -11.65783 -11.38450 -11.28137 -10.76714 -9.53984 -9.14011 -8.28570 -5.77795 0.67965 1.33689 1.41373 1.49640 1.61238 1.85353 1.89880 2.02990 2.37717 2.94185 3.21882 3.37868 3.69825 3.91548 4.09937 4.11921 4.18908 4.22435 4.31497 4.32812 4.35655 4.42630 4.49787 4.63746 4.67544 4.71319 4.81400 4.86612 4.89281 5.06163 5.21985 5.26228 5.38511 5.51917 5.55080 5.76085 6.07484 6.63493 6.99266 7.03905 7.39360 7.73857 8.89866 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.016118 B = 0.006777 C = 0.005690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.768995 B = 4130.926049 C = 4920.127689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.376 6.376 3 C 0.427 3.573 4 O -0.517 6.517 5 C 0.133 3.867 6 N -0.566 5.566 7 C -0.276 4.276 8 H 0.028 0.972 9 C -0.012 4.012 10 N -0.939 5.939 11 Si 0.940 3.060 12 H -0.266 1.266 13 H -0.299 1.299 14 H -0.227 1.227 15 C 0.227 3.773 16 C 0.181 3.819 17 N -0.498 5.498 18 C -0.058 4.058 19 C -0.059 4.059 20 C -0.004 4.004 21 C -0.140 4.140 22 C -0.144 4.144 23 O -0.217 6.217 24 H 0.042 0.958 25 H 0.134 0.866 26 H 0.053 0.947 27 H 0.087 0.913 28 H 0.134 0.866 29 H 0.269 0.731 30 H 0.099 0.901 31 H 0.127 0.873 32 H 0.196 0.804 33 H 0.127 0.873 34 H 0.063 0.937 35 H 0.091 0.909 36 H 0.039 0.961 37 H 0.032 0.968 38 H 0.039 0.961 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.328 -0.210 13.152 14.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.293 6.293 3 C 0.267 3.733 4 O -0.403 6.403 5 C 0.005 3.995 6 N -0.286 5.286 7 C -0.405 4.405 8 H 0.046 0.954 9 C -0.210 4.210 10 N -0.580 5.580 11 Si 0.764 3.236 12 H -0.193 1.193 13 H -0.227 1.227 14 H -0.149 1.149 15 C 0.100 3.900 16 C -0.028 4.028 17 N -0.228 5.228 18 C -0.196 4.196 19 C -0.112 4.112 20 C -0.023 4.023 21 C -0.197 4.197 22 C -0.201 4.201 23 O -0.104 6.104 24 H 0.061 0.939 25 H 0.152 0.848 26 H 0.072 0.928 27 H 0.104 0.896 28 H 0.152 0.848 29 H 0.078 0.922 30 H 0.117 0.883 31 H 0.145 0.855 32 H 0.213 0.787 33 H 0.145 0.855 34 H 0.082 0.918 35 H 0.110 0.890 36 H 0.058 0.942 37 H 0.051 0.949 38 H 0.059 0.941 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.399 -0.477 13.175 14.655 hybrid contribution -0.328 0.322 -1.122 1.213 sum -6.726 -0.155 12.053 13.804 Atomic orbital electron populations 1.23316 0.76411 1.04986 1.01185 1.86528 1.24063 1.34126 1.84588 1.26118 0.94457 0.81130 0.71588 1.90582 1.67351 1.37441 1.44956 1.21508 0.85419 0.87822 1.04759 1.43963 1.74027 1.08315 1.02269 1.18438 1.36883 0.96151 0.89068 0.95381 1.26174 0.98477 1.02307 0.94082 1.70047 1.44431 1.44366 0.99135 0.85925 0.78892 0.78643 0.80123 1.19276 1.22725 1.14919 1.19841 0.85844 0.96865 0.87451 1.28187 1.00498 0.79788 0.94335 1.70240 1.02605 1.31782 1.18183 1.23285 1.00551 0.90422 1.05381 1.24018 0.87045 1.01158 0.99029 1.19894 0.95757 0.88197 0.98405 1.21817 1.00140 0.97027 1.00760 1.21823 1.01128 1.02362 0.94815 1.84387 1.31842 1.35495 1.58630 0.93898 0.84784 0.92837 0.89557 0.84838 0.92238 0.88270 0.85530 0.78705 0.85548 0.91764 0.88979 0.94172 0.94910 0.94147 0.88487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.04 10.56 113.37 1.20 2.24 16 2 O -0.38 -14.17 10.56 -51.36 -0.54 -14.71 16 3 C 0.43 18.87 8.02 71.24 0.57 19.44 16 4 O -0.52 -26.27 13.95 21.96 0.31 -25.96 16 5 C 0.13 5.50 5.15 85.64 0.44 5.94 16 6 N -0.57 -26.18 1.63 -710.69 -1.16 -27.34 16 7 C -0.28 -15.61 9.90 84.03 0.83 -14.78 16 8 H 0.03 1.86 8.06 -2.91 -0.02 1.83 16 9 C -0.01 -0.70 5.30 84.86 0.45 -0.25 16 10 N -0.94 -57.87 13.97 21.65 0.30 -57.57 16 11 Si 0.94 41.50 25.06 68.60 1.72 43.22 16 12 H -0.27 -11.12 6.66 99.48 0.66 -10.45 16 13 H -0.30 -13.48 7.11 99.48 0.71 -12.77 16 14 H -0.23 -8.78 7.11 99.48 0.71 -8.07 16 15 C 0.23 8.84 6.33 85.63 0.54 9.38 16 16 C 0.18 7.64 6.62 88.34 0.59 8.22 16 17 N -0.50 -20.18 10.45 -303.83 -3.17 -23.35 16 18 C -0.06 -2.07 11.78 83.39 0.98 -1.09 16 19 C -0.06 -2.10 5.89 24.79 0.15 -1.96 16 20 C 0.00 -0.10 3.33 -11.54 -0.04 -0.14 16 21 C -0.14 -3.02 9.17 71.98 0.66 -2.36 16 22 C -0.14 -3.99 9.18 71.98 0.66 -3.33 16 23 O -0.22 -9.43 10.78 -3.74 -0.04 -9.47 16 24 H 0.04 1.38 8.13 -2.39 -0.02 1.36 16 25 H 0.13 2.77 8.14 -2.39 -0.02 2.75 16 26 H 0.05 1.61 8.13 -2.39 -0.02 1.59 16 27 H 0.09 3.74 3.27 -2.39 -0.01 3.73 16 28 H 0.13 4.29 7.91 -2.39 -0.02 4.27 16 29 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 30 H 0.10 3.68 8.02 -2.39 -0.02 3.66 16 31 H 0.13 3.87 7.92 -2.39 -0.02 3.85 16 32 H 0.20 5.46 8.06 -2.91 -0.02 5.43 16 33 H 0.13 2.42 8.11 -2.39 -0.02 2.40 16 34 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -77.12 331.43 5.44 -71.68 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: 1.00 Total: 22.19 kcal Atomic # 6 Polarization: 14.28 SS G_CDS: 7.03 Total: 21.31 kcal Atomic # 7 Polarization: -104.23 SS G_CDS: -4.03 Total: -108.26 kcal Atomic # 8 Polarization: -49.87 SS G_CDS: -0.28 Total: -50.15 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 1.72 Total: 43.22 kcal Total: -77.12 5.44 -71.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746455790.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.762 kcal (2) G-P(sol) polarization free energy of solvation -77.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds