Wall clock time and date at job start Tue Mar 31 2020 05:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 110.62325 * 2 1 4 4 C 1.55140 * 110.70400 * 236.70899 * 2 1 3 5 5 C 1.54901 * 101.65277 * 205.96003 * 4 2 1 6 6 N 1.47840 * 104.79442 * 37.07193 * 5 4 2 7 7 C 1.46909 * 111.00033 * 213.63389 * 6 5 4 8 8 N 1.46499 * 109.46988 * 290.84620 * 7 6 5 9 9 N 1.40165 * 126.13891 * 269.99649 * 8 7 6 10 10 C 1.32250 * 107.75388 * 180.02562 * 9 8 7 11 11 C 1.40119 * 125.92410 * 179.97438 * 10 9 8 12 12 H 1.08000 * 119.99650 * 180.02562 * 11 10 9 13 13 C 1.40039 * 120.00027 * 0.02562 * 11 10 9 14 14 N 1.30794 * 120.00242 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99862 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47317 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46868 * 120.00147 * 15 13 11 18 18 H 1.48495 * 109.47414 * 239.99992 * 15 13 11 19 19 N 1.38494 * 108.14754 * 0.02562 * 10 9 8 20 20 C 1.46497 * 125.83739 * 179.97438 * 19 10 9 21 21 C 1.34735 * 108.33090 * 359.97438 * 19 10 9 22 22 S 1.71194 * 125.97151 * 179.73950 * 21 19 10 23 23 C 1.47441 * 108.57069 * 335.90133 * 6 5 4 24 24 H 1.09004 * 109.47073 * 296.88706 * 1 2 3 25 25 H 1.09005 * 109.47598 * 56.88919 * 1 2 3 26 26 H 1.08995 * 109.47135 * 176.89215 * 1 2 3 27 27 H 1.08998 * 110.99150 * 324.05489 * 4 2 1 28 28 H 1.09006 * 110.99301 * 87.83070 * 4 2 1 29 29 H 1.09001 * 110.37684 * 278.24000 * 5 4 2 30 30 H 1.09003 * 110.37649 * 155.90196 * 5 4 2 31 31 H 1.08997 * 109.47197 * 170.83854 * 7 6 5 32 32 H 1.09002 * 109.46585 * 50.84495 * 7 6 5 33 33 H 0.96994 * 120.00174 * 180.02562 * 14 13 11 34 34 H 1.09002 * 109.47205 * 270.00265 * 20 19 10 35 35 H 1.09001 * 109.46839 * 29.99536 * 20 19 10 36 36 H 1.09004 * 109.47514 * 149.99846 * 20 19 10 37 37 H 1.08998 * 109.89346 * 120.39623 * 23 6 5 38 38 H 1.09003 * 109.89158 * 241.42928 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9139 1.0201 0.0000 4 6 2.0785 -0.7966 -1.2131 5 6 3.4650 -1.2476 -0.6901 6 7 3.2489 -1.5489 0.7411 7 6 4.4407 -1.2191 1.5343 8 7 5.5194 -2.1547 1.2070 9 7 5.7744 -3.3775 1.8428 10 6 6.8292 -3.9226 1.2604 11 6 7.4122 -5.1509 1.5991 12 1 8.2764 -5.5061 1.0574 13 6 6.8742 -5.9180 2.6399 14 7 5.8280 -5.4876 3.2963 15 14 7.6510 -7.5558 3.0910 16 1 8.8144 -7.8128 2.2045 17 1 8.1055 -7.5156 4.5042 18 1 6.6511 -8.6408 2.9234 19 7 7.2583 -3.0683 0.2584 20 6 8.4006 -3.2942 -0.6306 21 6 6.4457 -1.9937 0.2409 22 16 6.5720 -0.6545 -0.8181 23 6 2.0757 -0.7885 1.2091 24 1 -0.3633 0.4648 0.9166 25 1 -0.3634 0.5614 -0.8608 26 1 -0.3633 -1.0261 -0.0557 27 1 1.4459 -1.6562 -1.4339 28 1 2.1805 -0.1545 -2.0880 29 1 4.1930 -0.4442 -0.8031 30 1 3.7984 -2.1401 -1.2197 31 1 4.2033 -1.2950 2.5954 32 1 4.7595 -0.2022 1.3052 33 1 5.4556 -6.0187 4.0175 34 1 9.2999 -2.8735 -0.1807 35 1 8.5370 -4.3650 -0.7819 36 1 8.2150 -2.8123 -1.5905 37 1 1.3132 -1.4737 1.5796 38 1 2.3716 -0.1001 2.0007 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794625834.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:55 Heat of formation + Delta-G solvation = 79.735507 kcal Electronic energy + Delta-G solvation = -20529.224481 eV Core-core repulsion = 17534.227390 eV Total energy + Delta-G solvation = -2994.997091 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.121 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.88824 -38.80580 -34.88001 -33.96391 -32.60178 -30.53141 -29.47389 -27.73793 -26.58045 -25.56521 -24.13551 -21.75349 -20.97984 -20.46759 -20.05271 -17.81445 -16.81994 -15.98497 -15.76432 -15.49762 -14.87264 -14.71351 -14.42079 -13.77559 -13.51300 -13.42421 -12.99317 -12.71754 -12.32363 -12.22238 -11.82605 -11.72051 -11.64110 -11.49893 -11.27821 -11.00537 -10.75072 -10.64304 -10.58817 -10.52240 -10.36657 -10.07258 -9.54092 -9.21360 -8.88122 -8.06863 -7.02771 -6.80821 -6.59115 -5.12852 2.31119 2.55471 2.78210 2.91902 2.97044 3.34599 3.54473 3.65527 4.06954 4.40115 4.71309 4.85827 4.91827 4.96379 5.22297 5.50890 5.55067 5.57734 5.60089 5.71235 5.74158 5.81311 5.84567 6.01713 6.07991 6.11789 6.16112 6.24932 6.35777 6.50993 6.54068 6.63929 6.81609 7.00088 7.21260 7.30145 7.60341 7.79373 8.24120 8.36234 9.15660 9.94718 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.019566 B = 0.005474 C = 0.004527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.698250 B = 5114.103807 C = 6183.796143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.114 4.114 3 H 0.075 0.925 4 C -0.122 4.122 5 C 0.030 3.970 6 N -0.541 5.541 7 C 0.320 3.680 8 N -0.368 5.368 9 N -0.329 5.329 10 C 0.371 3.629 11 C -0.438 4.438 12 H 0.098 0.902 13 C 0.076 3.924 14 N -0.736 5.736 15 Si 0.928 3.072 16 H -0.258 1.258 17 H -0.270 1.270 18 H -0.270 1.270 19 N -0.514 5.514 20 C 0.100 3.900 21 C 0.465 3.535 22 S -0.715 6.715 23 C 0.057 3.943 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.067 0.933 31 H 0.101 0.899 32 H 0.074 0.926 33 H 0.285 0.715 34 H 0.066 0.934 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.744 2.548 -1.582 5.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.133 4.133 3 H 0.094 0.906 4 C -0.161 4.161 5 C -0.097 4.097 6 N -0.268 5.268 7 C 0.108 3.892 8 N -0.153 5.153 9 N -0.161 5.161 10 C 0.122 3.878 11 C -0.480 4.480 12 H 0.116 0.884 13 C -0.151 4.151 14 N -0.360 5.360 15 Si 0.752 3.248 16 H -0.182 1.182 17 H -0.195 1.195 18 H -0.195 1.195 19 N -0.214 5.214 20 C -0.043 4.043 21 C 0.095 3.905 22 S -0.590 6.590 23 C -0.071 4.071 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.112 0.888 30 H 0.086 0.914 31 H 0.119 0.881 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.103 0.897 36 H 0.108 0.892 37 H 0.096 0.904 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.682 2.697 -1.158 6.395 hybrid contribution 0.953 -0.630 0.164 1.155 sum -4.729 2.067 -0.993 5.255 Atomic orbital electron populations 1.21718 0.94533 1.01920 1.01384 1.22362 0.96012 0.99307 0.95634 0.90614 1.22772 0.96847 0.99351 0.97104 1.23592 0.97018 1.02226 0.86908 1.63439 1.03366 1.56229 1.03719 1.21927 0.80870 0.88658 0.97765 1.49152 1.22178 1.18597 1.25363 1.79444 1.20330 0.93919 1.22380 1.21360 0.90368 0.92181 0.83908 1.18387 1.13942 0.98973 1.16703 0.88437 1.25842 0.94340 1.00140 0.94749 1.69887 1.15586 1.36061 1.14464 0.85915 0.79831 0.79806 0.79292 1.18181 1.19509 1.19487 1.45965 1.27138 1.16845 1.31476 1.21760 0.85913 1.02730 0.93906 1.22873 0.86189 0.90952 0.90509 1.92625 1.90190 1.26923 1.49311 1.22731 0.92624 0.95257 0.96522 0.92746 0.92737 0.92424 0.91373 0.91118 0.88777 0.91430 0.88120 0.90810 0.90377 0.91491 0.89747 0.89223 0.90369 0.92836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.14 37.16 0.34 -1.07 16 2 C -0.11 -1.43 3.54 -88.80 -0.31 -1.74 16 3 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 4 C -0.12 -1.76 6.52 -24.60 -0.16 -1.92 16 5 C 0.03 0.56 5.50 -2.30 -0.01 0.54 16 6 N -0.54 -10.02 5.31 -235.15 -1.25 -11.27 16 7 C 0.32 6.36 5.60 -63.31 -0.35 6.00 16 8 N -0.37 -8.71 3.68 -65.05 -0.24 -8.95 16 9 N -0.33 -8.63 10.77 31.21 0.34 -8.29 16 10 C 0.37 9.30 7.50 -155.27 -1.16 8.13 16 11 C -0.44 -10.35 8.98 -38.20 -0.34 -10.69 16 12 H 0.10 2.07 7.11 -52.49 -0.37 1.69 16 13 C 0.08 1.73 5.50 -17.32 -0.10 1.64 16 14 N -0.74 -18.10 11.90 55.55 0.66 -17.44 16 15 Si 0.93 16.76 29.56 -169.99 -5.02 11.73 16 16 H -0.26 -4.49 7.11 56.52 0.40 -4.09 16 17 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 18 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 19 N -0.51 -11.78 3.17 -124.66 -0.39 -12.18 16 20 C 0.10 1.80 10.65 59.85 0.64 2.44 16 21 C 0.46 11.09 7.37 -86.93 -0.64 10.45 16 22 S -0.72 -17.08 26.60 -107.50 -2.86 -19.94 16 23 C 0.06 0.82 6.46 -2.84 -0.02 0.80 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 27 H 0.07 0.97 8.02 -51.93 -0.42 0.55 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.09 1.90 5.12 -51.77 -0.26 1.64 16 30 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 31 H 0.10 1.89 8.03 -51.93 -0.42 1.48 16 32 H 0.07 1.44 7.35 -51.93 -0.38 1.05 16 33 H 0.29 6.32 8.29 -40.82 -0.34 5.98 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.08 1.34 7.32 -51.93 -0.38 0.96 16 36 H 0.09 1.59 7.62 -51.93 -0.40 1.19 16 37 H 0.08 1.10 7.82 -51.93 -0.41 0.69 16 38 H 0.05 0.69 7.55 -51.93 -0.39 0.30 16 LS Contribution 320.24 15.07 4.83 4.83 Total: -1.00 -29.73 320.24 -11.59 -41.32 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -5.52 Total: 5.60 kcal Atomic # 6 Polarization: 16.71 SS G_CDS: -2.13 Total: 14.58 kcal Atomic # 7 Polarization: -57.24 SS G_CDS: -0.89 Total: -58.13 kcal Atomic # 14 Polarization: 16.76 SS G_CDS: -5.02 Total: 11.73 kcal Atomic # 16 Polarization: -17.08 SS G_CDS: -2.86 Total: -19.94 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.73 -11.59 -41.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794625834.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.059 kcal (2) G-P(sol) polarization free energy of solvation -29.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds