Wall clock time and date at job start Tue Mar 31 2020 05:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 110.64240 * 2 1 4 4 C 1.54598 * 110.72198 * 123.15261 * 2 1 3 5 5 C 1.53992 * 105.14037 * 140.49730 * 4 2 1 6 6 N 1.47906 * 107.05668 * 1.21628 * 5 4 2 7 7 C 1.46903 * 110.99863 * 214.15575 * 6 5 4 8 8 N 1.46500 * 109.46720 * 69.05232 * 7 6 5 9 9 N 1.40168 * 126.14351 * 276.71274 * 8 7 6 10 10 C 1.32238 * 107.75552 * 179.97438 * 9 8 7 11 11 C 1.40127 * 125.92499 * 179.97438 * 10 9 8 12 12 H 1.07996 * 120.00122 * 174.54234 * 11 10 9 13 13 C 1.40032 * 119.99893 * 354.55021 * 11 10 9 14 14 N 1.30801 * 120.00301 * 5.42993 * 13 11 10 15 15 Si 1.86800 * 120.00131 * 185.43240 * 13 11 10 16 16 H 1.48500 * 109.47275 * 94.93724 * 15 13 11 17 17 H 1.48499 * 109.47278 * 214.94518 * 15 13 11 18 18 H 1.48501 * 109.47024 * 334.93967 * 15 13 11 19 19 N 1.38501 * 108.15052 * 0.02562 * 10 9 8 20 20 C 1.46506 * 125.83571 * 180.02562 * 19 10 9 21 21 C 1.34721 * 108.32655 * 0.25746 * 19 10 9 22 22 S 1.71202 * 125.97101 * 179.74181 * 21 19 10 23 23 C 1.48527 * 105.82285 * 334.67573 * 6 5 4 24 24 H 1.09001 * 109.46893 * 298.30557 * 1 2 3 25 25 H 1.09001 * 109.46836 * 58.30278 * 1 2 3 26 26 H 1.08999 * 109.46842 * 178.30468 * 1 2 3 27 27 H 1.08994 * 110.31313 * 21.57376 * 4 2 1 28 28 H 1.09004 * 110.38847 * 259.45001 * 4 2 1 29 29 H 1.09000 * 109.91284 * 241.86872 * 5 4 2 30 30 H 1.08993 * 109.92300 * 120.57512 * 5 4 2 31 31 H 1.08995 * 109.47314 * 309.05040 * 7 6 5 32 32 H 1.08997 * 109.47022 * 189.04645 * 7 6 5 33 33 H 0.96998 * 120.00017 * 179.97438 * 14 13 11 34 34 H 1.08995 * 109.46943 * 89.99241 * 20 19 10 35 35 H 1.09003 * 109.47108 * 329.99365 * 20 19 10 36 36 H 1.08999 * 109.46545 * 209.99685 * 20 19 10 37 37 H 1.08994 * 110.66653 * 157.63841 * 23 6 5 38 38 H 1.09001 * 110.66625 * 280.76898 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0771 -0.7908 1.2106 5 6 3.2921 -1.5662 0.6687 6 7 3.4359 -1.2051 -0.7584 7 6 3.9294 -2.3450 -1.5427 8 7 2.8911 -3.3762 -1.6118 9 7 2.6294 -4.3522 -0.6404 10 6 1.6202 -5.0899 -1.0716 11 6 1.0478 -6.1758 -0.3958 12 1 0.1680 -6.6578 -0.7957 13 6 1.6166 -6.6358 0.7983 14 7 2.6163 -5.9882 1.3387 15 14 0.9476 -8.1745 1.6195 16 1 1.7505 -9.3501 1.1968 17 1 1.0292 -8.0238 3.0945 18 1 -0.4688 -8.3730 1.2198 19 7 1.2277 -4.6038 -2.3078 20 6 0.1408 -5.1364 -3.1332 21 6 2.0197 -3.5608 -2.6237 22 16 1.9315 -2.6292 -4.0573 23 6 2.0822 -0.7940 -1.2105 24 1 -0.3633 0.4873 0.9048 25 1 -0.3633 0.5400 -0.8744 26 1 -0.3633 -1.0272 -0.0304 27 1 1.3219 -1.4829 1.5829 28 1 2.3864 -0.1078 2.0019 29 1 3.1213 -2.6384 0.7650 30 1 4.1899 -1.2799 1.2165 31 1 4.8189 -2.7564 -1.0657 32 1 4.1784 -2.0121 -2.5503 33 1 3.0100 -6.3067 2.1660 34 1 -0.7907 -4.6316 -2.8771 35 1 0.0364 -6.2059 -2.9506 36 1 0.3680 -4.9679 -4.1858 37 1 2.1482 -0.1556 -2.0915 38 1 1.4624 -1.6675 -1.4127 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794625835.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:57 Heat of formation + Delta-G solvation = 81.492162 kcal Electronic energy + Delta-G solvation = -21273.800803 eV Core-core repulsion = 18278.879887 eV Total energy + Delta-G solvation = -2994.920917 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.06779 -38.60475 -34.84837 -34.04453 -32.50689 -30.69686 -29.12540 -27.64112 -26.64121 -25.86189 -23.92942 -21.84418 -21.00494 -20.38213 -19.78492 -17.81525 -16.75948 -16.05572 -15.80854 -15.61745 -14.95931 -14.61218 -14.49057 -13.86932 -13.45512 -12.96856 -12.85096 -12.72928 -12.27332 -12.14074 -11.87546 -11.86064 -11.58017 -11.27207 -11.22614 -10.95648 -10.67228 -10.57798 -10.55565 -10.37971 -10.26824 -10.02603 -9.57225 -9.27115 -8.92910 -8.34400 -7.12679 -6.79492 -6.75013 -5.21492 2.29175 2.53483 2.72175 2.86109 2.89933 3.37534 3.45432 3.59128 4.06238 4.42491 4.75722 4.87575 5.04189 5.21924 5.28999 5.51973 5.62915 5.77533 5.79353 5.84692 5.87778 5.98120 6.04860 6.09504 6.18332 6.23755 6.30909 6.39732 6.40908 6.49512 6.60945 6.65840 6.73827 6.95025 7.18053 7.23484 7.50753 7.70831 8.16733 8.28194 9.07146 9.84825 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.015341 B = 0.007489 C = 0.006060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.741571 B = 3738.131530 C = 4619.096547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.097 4.097 3 H 0.077 0.923 4 C -0.122 4.122 5 C 0.018 3.982 6 N -0.511 5.511 7 C 0.299 3.701 8 N -0.400 5.400 9 N -0.343 5.343 10 C 0.374 3.626 11 C -0.438 4.438 12 H 0.097 0.903 13 C 0.077 3.923 14 N -0.737 5.737 15 Si 0.927 3.073 16 H -0.266 1.266 17 H -0.273 1.273 18 H -0.259 1.259 19 N -0.516 5.516 20 C 0.099 3.901 21 C 0.468 3.532 22 S -0.711 6.711 23 C 0.046 3.954 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.099 0.901 32 H 0.117 0.883 33 H 0.286 0.714 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.265 2.225 3.034 4.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.116 4.116 3 H 0.095 0.905 4 C -0.160 4.160 5 C -0.110 4.110 6 N -0.234 5.234 7 C 0.088 3.912 8 N -0.189 5.189 9 N -0.175 5.175 10 C 0.125 3.875 11 C -0.479 4.479 12 H 0.115 0.885 13 C -0.149 4.149 14 N -0.361 5.361 15 Si 0.750 3.250 16 H -0.191 1.191 17 H -0.197 1.197 18 H -0.183 1.183 19 N -0.217 5.217 20 C -0.044 4.044 21 C 0.099 3.901 22 S -0.587 6.587 23 C -0.081 4.081 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.107 0.893 30 H 0.088 0.912 31 H 0.117 0.883 32 H 0.135 0.865 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.104 0.896 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.987 3.439 3.108 4.740 hybrid contribution -1.240 -2.003 0.667 2.448 sum -2.227 1.436 3.775 4.612 Atomic orbital electron populations 1.21722 0.94891 1.01833 1.01224 1.22081 0.95302 0.99275 0.94982 0.90497 1.22408 0.97600 0.98503 0.97456 1.23099 0.97682 1.02032 0.88188 1.65296 1.24958 1.29728 1.03449 1.22729 0.87753 0.79578 1.01124 1.50365 1.27234 1.27058 1.14252 1.79265 1.23002 1.05883 1.09312 1.21290 0.90821 0.94350 0.81051 1.18367 1.12827 1.10679 1.06061 0.88516 1.25824 0.94214 0.98624 0.96258 1.69865 1.16155 1.34580 1.15500 0.85962 0.80269 0.80128 0.78595 1.19111 1.19738 1.18260 1.46027 1.30022 1.26964 1.18637 1.21761 0.87463 0.99387 0.95788 1.23027 0.86125 0.88370 0.92625 1.92794 1.89449 1.58063 1.18424 1.23315 0.88473 0.99070 0.97287 0.92835 0.92592 0.92844 0.91659 0.91837 0.89271 0.91166 0.88304 0.86546 0.90332 0.91590 0.89756 0.89132 0.89596 0.92659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.16 37.16 0.34 -1.68 16 2 C -0.10 -1.53 3.65 -88.75 -0.32 -1.85 16 3 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 4 C -0.12 -1.95 6.51 -25.37 -0.17 -2.12 16 5 C 0.02 0.32 6.55 -2.75 -0.02 0.30 16 6 N -0.51 -9.32 5.54 -234.35 -1.30 -10.61 16 7 C 0.30 5.82 6.39 -63.31 -0.40 5.41 16 8 N -0.40 -8.94 2.72 -65.05 -0.18 -9.11 16 9 N -0.34 -8.33 9.06 31.21 0.28 -8.05 16 10 C 0.37 8.91 7.50 -155.27 -1.16 7.75 16 11 C -0.44 -9.92 8.95 -38.20 -0.34 -10.27 16 12 H 0.10 1.99 7.20 -52.49 -0.38 1.61 16 13 C 0.08 1.69 5.49 -17.32 -0.10 1.60 16 14 N -0.74 -17.13 11.92 55.55 0.66 -16.47 16 15 Si 0.93 16.23 29.56 -169.99 -5.03 11.21 16 16 H -0.27 -4.66 7.11 56.52 0.40 -4.26 16 17 H -0.27 -4.74 7.11 56.52 0.40 -4.34 16 18 H -0.26 -4.41 7.11 56.52 0.40 -4.01 16 19 N -0.52 -11.40 3.17 -124.65 -0.39 -11.80 16 20 C 0.10 1.74 10.64 59.85 0.64 2.38 16 21 C 0.47 10.79 6.08 -86.94 -0.53 10.26 16 22 S -0.71 -17.00 28.73 -107.50 -3.09 -20.09 16 23 C 0.05 0.86 5.31 -1.90 -0.01 0.85 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.05 0.87 8.13 -51.93 -0.42 0.45 16 27 H 0.06 1.13 7.85 -51.93 -0.41 0.72 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.09 1.90 5.84 -51.93 -0.30 1.60 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.10 1.82 8.09 -51.93 -0.42 1.40 16 32 H 0.12 2.27 7.43 -51.93 -0.39 1.89 16 33 H 0.29 6.04 8.29 -40.82 -0.34 5.70 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.08 1.31 7.38 -51.93 -0.38 0.92 16 36 H 0.09 1.58 7.60 -51.93 -0.39 1.19 16 37 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 38 H 0.06 1.21 5.18 -51.93 -0.27 0.94 16 LS Contribution 318.25 15.07 4.80 4.80 Total: -1.00 -27.58 318.25 -11.77 -39.36 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -5.46 Total: 8.14 kcal Atomic # 6 Polarization: 14.71 SS G_CDS: -2.07 Total: 12.63 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: -0.92 Total: -56.04 kcal Atomic # 14 Polarization: 16.23 SS G_CDS: -5.03 Total: 11.21 kcal Atomic # 16 Polarization: -17.00 SS G_CDS: -3.09 Total: -20.09 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -27.58 -11.77 -39.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794625835.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.848 kcal (2) G-P(sol) polarization free energy of solvation -27.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds