Wall clock time and date at job start Tue Mar 31 2020 05:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50696 * 120.00162 * 2 1 4 4 C 1.52993 * 109.47429 * 124.99709 * 3 2 1 5 5 N 1.46906 * 109.47378 * 179.97438 * 4 3 2 6 6 C 1.46900 * 110.99728 * 66.04954 * 5 4 3 7 7 C 1.46905 * 111.00051 * 189.99991 * 5 4 3 8 8 N 1.46500 * 109.47132 * 169.99846 * 7 5 4 9 9 N 1.40169 * 126.14189 * 90.02510 * 8 7 5 10 10 C 1.32234 * 107.75528 * 180.02562 * 9 8 7 11 11 C 1.40126 * 125.92517 * 179.97438 * 10 9 8 12 12 H 1.07997 * 120.00063 * 179.97438 * 11 10 9 13 13 C 1.40036 * 119.99635 * 359.97438 * 11 10 9 14 14 N 1.30793 * 120.00324 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99663 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47146 * 89.99944 * 15 13 11 17 17 H 1.48493 * 109.47086 * 209.99963 * 15 13 11 18 18 H 1.48501 * 109.46996 * 329.99953 * 15 13 11 19 19 N 1.38500 * 108.14902 * 0.02562 * 10 9 8 20 20 C 1.46503 * 125.83711 * 179.97438 * 19 10 9 21 21 C 1.34729 * 108.33076 * 359.73433 * 19 10 9 22 22 S 1.71195 * 125.97607 * 180.26291 * 21 19 10 23 23 H 1.08008 * 119.99926 * 0.02562 * 1 2 3 24 24 H 1.08001 * 120.00447 * 180.02562 * 1 2 3 25 25 H 1.07991 * 120.00020 * 179.97438 * 2 1 3 26 26 H 1.09004 * 109.47043 * 4.99887 * 3 2 1 27 27 H 1.09004 * 109.47476 * 244.99961 * 3 2 1 28 28 H 1.09004 * 109.46862 * 60.00067 * 4 3 2 29 29 H 1.09000 * 109.47250 * 300.00090 * 4 3 2 30 30 H 1.08996 * 109.47030 * 59.99921 * 6 5 4 31 31 H 1.08999 * 109.46702 * 180.02562 * 6 5 4 32 32 H 1.08996 * 109.46890 * 299.99929 * 6 5 4 33 33 H 1.08997 * 109.46807 * 290.00444 * 7 5 4 34 34 H 1.09000 * 109.46636 * 50.00310 * 7 5 4 35 35 H 0.96997 * 120.00323 * 179.97438 * 14 13 11 36 36 H 1.08996 * 109.47202 * 89.99659 * 20 19 10 37 37 H 1.08998 * 109.47717 * 210.00190 * 20 19 10 38 38 H 1.09001 * 109.46747 * 330.00234 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0350 1.3331 1.1816 5 7 3.7700 2.6051 1.1812 6 6 2.8679 3.7344 1.4437 7 6 4.8730 2.5760 2.1511 8 7 5.7234 3.7533 1.9588 9 7 5.5698 4.9959 2.5889 10 6 6.5314 5.7914 2.1516 11 6 6.7341 7.1238 2.5351 12 1 7.5543 7.6876 2.1158 13 6 5.8731 7.7243 3.4620 14 7 4.8795 7.0417 3.9694 15 14 6.1438 9.5004 3.9738 16 1 5.3881 10.3984 3.0640 17 1 5.6671 9.6922 5.3670 18 1 7.5915 9.8224 3.8972 19 7 7.3026 5.0795 1.2480 20 6 8.4720 5.5908 0.5286 21 6 6.7969 3.8348 1.1474 22 16 7.4082 2.5777 0.1592 23 1 -0.5400 0.9354 -0.0004 24 1 -0.5401 -0.9353 0.0004 25 1 1.8499 -0.9352 0.0004 26 1 1.3586 2.1316 0.0896 27 1 2.6213 1.4026 -0.9314 28 1 3.7399 0.5065 1.0920 29 1 2.4772 1.2356 2.1130 30 1 2.3959 3.6037 2.4174 31 1 3.4377 4.6635 1.4374 32 1 2.1007 3.7738 0.6704 33 1 4.4674 2.5820 3.1628 34 1 5.4642 1.6725 2.0019 35 1 4.2834 7.4575 4.6117 36 1 9.3706 5.4041 1.1167 37 1 8.5561 5.0859 -0.4337 38 1 8.3594 6.6630 0.3678 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794644797.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:48 Heat of formation + Delta-G solvation = 103.194142 kcal Electronic energy + Delta-G solvation = -20121.133361 eV Core-core repulsion = 17127.153512 eV Total energy + Delta-G solvation = -2993.979848 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.85387 -37.75107 -35.05842 -34.09551 -33.55789 -30.80632 -29.14454 -27.84441 -26.59991 -26.00249 -23.96519 -21.75427 -20.92565 -20.71623 -19.77763 -17.74365 -16.70995 -15.93061 -15.70492 -15.65070 -15.08622 -14.81346 -14.78194 -14.13453 -13.70625 -13.45989 -13.07342 -12.62721 -12.29948 -12.20671 -12.03362 -11.82391 -11.60571 -11.52198 -11.26677 -11.10308 -10.95988 -10.66763 -10.61490 -10.49656 -10.07336 -9.54786 -9.39200 -9.22042 -8.89679 -8.08424 -7.07624 -6.73094 -6.62914 -5.16429 2.20939 2.37014 2.62812 2.75986 2.89240 2.92878 3.40778 3.51025 3.62966 4.05924 4.33242 4.82242 4.89065 5.11879 5.18019 5.30940 5.37586 5.57269 5.60147 5.68757 5.77814 5.86452 5.88668 5.90984 6.07824 6.11109 6.18123 6.25731 6.52738 6.57470 6.61052 6.73547 6.78486 7.00925 7.19680 7.21337 7.61773 7.79144 8.22490 8.33407 9.14396 9.89825 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.017408 B = 0.005072 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.035647 B = 5519.506418 C = 6849.064957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.144 4.144 3 C -0.091 4.091 4 C 0.069 3.931 5 N -0.549 5.549 6 C 0.026 3.974 7 C 0.328 3.672 8 N -0.378 5.378 9 N -0.344 5.344 10 C 0.375 3.625 11 C -0.437 4.437 12 H 0.097 0.903 13 C 0.077 3.923 14 N -0.739 5.739 15 Si 0.928 3.072 16 H -0.266 1.266 17 H -0.273 1.273 18 H -0.259 1.259 19 N -0.518 5.518 20 C 0.101 3.899 21 C 0.481 3.519 22 S -0.707 6.707 23 H 0.094 0.906 24 H 0.094 0.906 25 H 0.109 0.891 26 H 0.066 0.934 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.034 0.966 30 H 0.024 0.976 31 H 0.083 0.917 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.110 0.890 35 H 0.285 0.715 36 H 0.066 0.934 37 H 0.089 0.911 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.211 -2.422 -0.848 5.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.163 4.163 3 C -0.129 4.129 4 C -0.059 4.059 5 N -0.275 5.275 6 C -0.122 4.122 7 C 0.116 3.884 8 N -0.164 5.164 9 N -0.176 5.176 10 C 0.126 3.874 11 C -0.479 4.479 12 H 0.115 0.885 13 C -0.149 4.149 14 N -0.363 5.363 15 Si 0.751 3.249 16 H -0.191 1.191 17 H -0.198 1.198 18 H -0.183 1.183 19 N -0.219 5.219 20 C -0.042 4.042 21 C 0.112 3.888 22 S -0.583 6.583 23 H 0.112 0.888 24 H 0.113 0.887 25 H 0.127 0.873 26 H 0.085 0.915 27 H 0.102 0.898 28 H 0.098 0.902 29 H 0.052 0.948 30 H 0.043 0.957 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.127 0.873 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.108 0.892 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.721 -3.239 -1.080 6.662 hybrid contribution -0.011 1.418 1.082 1.784 sum -5.731 -1.821 0.002 6.014 Atomic orbital electron populations 1.23814 0.95970 1.01592 1.02516 1.22976 0.95944 0.98652 0.98685 1.20764 0.97707 0.94817 0.99589 1.21909 0.95633 0.91372 0.96971 1.61785 1.11027 1.03712 1.50978 1.22438 0.96136 0.95078 0.98553 1.21660 0.87717 0.85302 0.93706 1.49099 1.21138 1.12813 1.33326 1.79329 1.24482 0.87764 1.26032 1.21271 0.85857 0.94210 0.86036 1.18366 1.14110 0.91852 1.23570 0.88475 1.25829 0.93687 1.00859 0.94554 1.69867 1.09914 1.37137 1.19390 0.85965 0.80116 0.80204 0.78584 1.19073 1.19824 1.18269 1.45977 1.27758 1.09572 1.38567 1.21746 0.85099 0.99973 0.97425 1.22862 0.87228 0.88831 0.89895 1.92692 1.77332 1.36141 1.52123 0.88759 0.88727 0.87309 0.91504 0.89784 0.90237 0.94790 0.95713 0.89783 0.92059 0.91871 0.87266 0.90399 0.91553 0.89195 0.89823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.00 14.32 29.01 0.42 -1.58 16 2 C -0.14 -1.56 9.52 -36.03 -0.34 -1.90 16 3 C -0.09 -1.15 5.58 -27.89 -0.16 -1.31 16 4 C 0.07 0.97 4.94 -3.82 -0.02 0.95 16 5 N -0.55 -9.78 4.90 -246.85 -1.21 -10.99 16 6 C 0.03 0.46 9.22 60.06 0.55 1.01 16 7 C 0.33 6.39 5.92 -63.31 -0.37 6.02 16 8 N -0.38 -8.77 3.34 -65.05 -0.22 -8.99 16 9 N -0.34 -8.63 9.69 31.21 0.30 -8.33 16 10 C 0.38 9.18 7.50 -155.28 -1.16 8.02 16 11 C -0.44 -10.09 8.98 -38.20 -0.34 -10.43 16 12 H 0.10 2.02 7.11 -52.49 -0.37 1.64 16 13 C 0.08 1.71 5.50 -17.32 -0.10 1.62 16 14 N -0.74 -17.50 11.90 55.55 0.66 -16.84 16 15 Si 0.93 16.39 29.56 -169.99 -5.03 11.37 16 16 H -0.27 -4.67 7.11 56.52 0.40 -4.27 16 17 H -0.27 -4.80 7.11 56.52 0.40 -4.40 16 18 H -0.26 -4.46 7.11 56.52 0.40 -4.06 16 19 N -0.52 -11.82 3.17 -124.66 -0.39 -12.21 16 20 C 0.10 1.82 10.64 59.85 0.64 2.45 16 21 C 0.48 11.58 7.84 -86.94 -0.68 10.90 16 22 S -0.71 -17.64 29.50 -107.50 -3.17 -20.81 16 23 H 0.09 0.91 7.84 -52.48 -0.41 0.50 16 24 H 0.09 0.80 8.06 -52.49 -0.42 0.37 16 25 H 0.11 1.07 8.06 -52.49 -0.42 0.65 16 26 H 0.07 0.84 6.21 -51.93 -0.32 0.52 16 27 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 28 H 0.08 1.08 7.93 -51.93 -0.41 0.67 16 29 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 1.83 6.64 -51.93 -0.34 1.48 16 32 H 0.06 0.97 6.47 -51.93 -0.34 0.63 16 33 H 0.06 1.18 8.12 -51.93 -0.42 0.76 16 34 H 0.11 2.09 7.43 -51.93 -0.39 1.71 16 35 H 0.28 6.12 8.30 -40.82 -0.34 5.78 16 36 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.09 1.61 7.62 -51.93 -0.40 1.22 16 38 H 0.08 1.32 7.32 -51.93 -0.38 0.94 16 LS Contribution 332.96 15.07 5.02 5.02 Total: -1.00 -29.40 332.96 -11.06 -40.46 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -5.45 Total: 5.59 kcal Atomic # 6 Polarization: 17.31 SS G_CDS: -1.57 Total: 15.74 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: -0.86 Total: -57.37 kcal Atomic # 14 Polarization: 16.39 SS G_CDS: -5.03 Total: 11.37 kcal Atomic # 16 Polarization: -17.64 SS G_CDS: -3.17 Total: -20.81 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.40 -11.06 -40.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794644797.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.654 kcal (2) G-P(sol) polarization free energy of solvation -29.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds