Wall clock time and date at job start Tue Mar 31 2020 06:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30281 * 126.28045 * 2 1 4 4 N 1.28666 * 109.38122 * 180.02562 * 3 2 1 5 5 C 1.30276 * 109.38173 * 0.02562 * 4 3 2 6 6 C 1.50703 * 126.28360 * 179.97438 * 5 4 3 7 7 H 1.08994 * 109.46888 * 165.02033 * 6 5 4 8 8 C 1.53007 * 109.46692 * 285.01999 * 6 5 4 9 9 O 1.45198 * 109.47160 * 45.02038 * 6 5 4 10 10 C 1.34221 * 116.99903 * 150.00217 * 9 6 5 11 11 O 1.20826 * 120.00367 * 359.97438 * 10 9 6 12 12 C 1.50706 * 120.00092 * 180.02562 * 10 9 6 13 13 C 1.52997 * 109.47238 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.46947 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.46891 * 179.97438 * 14 13 12 16 16 C 1.50706 * 109.46994 * 179.97438 * 15 14 13 17 17 H 1.07995 * 119.99838 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99810 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00437 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99747 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47494 * 89.99947 * 20 18 16 22 22 H 1.48508 * 109.46676 * 209.99921 * 20 18 16 23 23 H 1.48502 * 109.46977 * 329.99219 * 20 18 16 24 24 O 1.34359 * 126.28678 * 180.28821 * 2 1 3 25 25 H 1.08996 * 109.47348 * 89.97821 * 1 2 3 26 26 H 1.09005 * 109.46790 * 209.97936 * 1 2 3 27 27 H 1.09001 * 109.47049 * 329.97444 * 1 2 3 28 28 H 1.08998 * 109.46762 * 179.97438 * 8 6 5 29 29 H 1.08996 * 109.47318 * 299.99834 * 8 6 5 30 30 H 1.09000 * 109.47069 * 60.00060 * 8 6 5 31 31 H 1.09001 * 109.46953 * 299.99668 * 12 10 9 32 32 H 1.09000 * 109.47318 * 59.99266 * 12 10 9 33 33 H 1.09001 * 109.46832 * 299.99686 * 13 12 10 34 34 H 1.09004 * 109.47261 * 59.99705 * 13 12 10 35 35 H 1.08992 * 109.47554 * 299.99696 * 14 13 12 36 36 H 1.08996 * 109.47261 * 60.00229 * 14 13 12 37 37 H 1.08998 * 109.47844 * 299.99997 * 15 14 13 38 38 H 1.09001 * 109.47248 * 60.00689 * 15 14 13 39 39 H 0.96999 * 120.00397 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5090 0.6762 -0.0005 5 6 3.5655 -0.6253 -0.0015 6 6 4.8178 -1.4637 -0.0029 7 1 4.5676 -2.4909 0.2622 8 6 5.4485 -1.4358 -1.3966 9 8 5.7589 -0.9295 0.9652 10 6 6.5944 -1.8029 1.5488 11 8 6.5408 -2.9751 1.2608 12 6 7.5986 -1.3218 2.5643 13 6 8.4207 -2.5087 3.0706 14 6 9.4406 -2.0200 4.1011 15 6 10.2623 -3.2070 4.6079 16 6 11.2673 -2.7256 5.6225 17 1 11.3148 -1.6780 5.8803 18 6 12.1260 -3.6228 6.2214 19 7 12.0678 -4.8986 5.9078 20 14 13.3713 -3.0262 7.4795 21 1 12.7686 -3.0780 8.8357 22 1 14.5730 -3.8977 7.4382 23 1 13.7624 -1.6286 7.1646 24 8 2.3022 -1.0830 -0.0054 25 1 -0.3634 0.0004 -1.0276 26 1 -0.3633 -0.8902 0.5135 27 1 -0.3633 0.8898 0.5142 28 1 6.3545 -2.0417 -1.3975 29 1 4.7420 -1.8368 -2.1233 30 1 5.6987 -0.4085 -1.6617 31 1 8.2624 -0.5917 2.1012 32 1 7.0758 -0.8581 3.4009 33 1 7.7572 -3.2390 3.5336 34 1 8.9436 -2.9719 2.2338 35 1 10.1040 -1.2899 3.6378 36 1 8.9181 -1.5566 4.9380 37 1 9.5987 -3.9370 5.0714 38 1 10.7849 -3.6708 3.7712 39 1 12.6717 -5.5298 6.3295 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805696995.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:11 Heat of formation + Delta-G solvation = -70.557752 kcal Electronic energy + Delta-G solvation = -21010.077092 eV Core-core repulsion = 17533.517174 eV Total energy + Delta-G solvation = -3476.559918 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.66913 -40.79679 -37.27318 -36.59625 -35.03841 -34.02534 -32.72738 -32.03864 -29.89505 -28.45915 -26.15610 -25.16657 -23.43009 -22.88929 -21.96242 -20.56510 -20.06951 -18.05889 -17.85106 -17.69969 -16.76397 -16.47442 -16.17966 -15.19169 -14.99317 -14.75634 -14.42503 -13.92512 -13.74238 -13.50434 -13.33267 -12.81547 -12.69852 -12.67759 -12.40065 -12.25730 -11.99161 -11.77590 -11.69351 -11.28873 -11.21270 -11.02592 -10.66500 -10.62652 -10.50279 -10.47405 -9.96353 -9.67296 -9.31020 -9.03768 -8.32672 -5.97513 -4.00057 0.60434 1.43934 1.94905 2.09892 2.64253 3.28029 3.33394 3.39550 3.42887 3.92452 4.26008 4.30775 4.47478 4.55806 4.67846 4.71649 4.82188 4.93124 5.03027 5.13015 5.21918 5.23793 5.30439 5.31070 5.38086 5.61794 5.68759 6.01557 6.10543 6.19199 6.42921 6.73415 6.91166 7.13908 7.59253 7.70773 7.85056 7.88382 8.03005 8.44827 9.07437 9.63860 11.13761 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.041466 B = 0.002291 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.083438 B =12218.027912 C =12422.765370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.166 3.834 3 N -0.289 5.289 4 N -0.251 5.251 5 C 0.157 3.843 6 C 0.187 3.813 7 H 0.117 0.883 8 C -0.163 4.163 9 O -0.340 6.340 10 C 0.464 3.536 11 O -0.499 6.499 12 C -0.110 4.110 13 C -0.108 4.108 14 C -0.110 4.110 15 C 0.020 3.980 16 C -0.521 4.521 17 H 0.055 0.945 18 C 0.055 3.945 19 N -0.895 5.895 20 Si 0.892 3.108 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 O -0.220 6.220 25 H 0.101 0.899 26 H 0.095 0.905 27 H 0.109 0.891 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.108 0.892 32 H 0.106 0.894 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.016 0.984 38 H 0.017 0.983 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.830 8.312 -15.140 28.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.044 4.044 3 N -0.137 5.137 4 N -0.098 5.098 5 C -0.054 4.054 6 C 0.130 3.870 7 H 0.135 0.865 8 C -0.220 4.220 9 O -0.258 6.258 10 C 0.308 3.692 11 O -0.385 6.385 12 C -0.147 4.147 13 C -0.146 4.146 14 C -0.148 4.148 15 C -0.017 4.017 16 C -0.559 4.559 17 H 0.073 0.927 18 C -0.146 4.146 19 N -0.535 5.535 20 Si 0.720 3.280 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 O -0.099 6.099 25 H 0.119 0.881 26 H 0.113 0.887 27 H 0.128 0.872 28 H 0.106 0.894 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.126 0.874 32 H 0.124 0.876 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.034 0.966 38 H 0.035 0.965 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -22.410 9.006 -15.209 28.541 hybrid contribution 0.218 -1.062 0.687 1.283 sum -22.191 7.945 -14.522 27.685 Atomic orbital electron populations 1.20412 0.79780 1.06018 1.05436 1.28180 0.97935 0.79478 0.98797 1.74496 0.96021 1.25507 1.17647 1.74447 1.11878 1.08838 1.14668 1.27313 0.84868 0.91555 1.01693 1.20416 0.80744 0.95083 0.90741 0.86527 1.22212 1.02406 1.04910 0.92501 1.86691 1.44747 1.41723 1.52620 1.24451 0.80077 0.84562 0.80131 1.90685 1.68295 1.18412 1.61083 1.21672 0.95079 1.02148 0.95807 1.21605 0.97696 0.95191 1.00119 1.21654 0.96316 1.00627 0.96210 1.19100 0.94226 0.92444 0.95947 1.21272 1.17475 0.94120 1.23030 0.92668 1.25044 0.97578 0.94933 0.97048 1.69970 1.38445 1.01829 1.43231 0.86597 0.80961 0.78665 0.81789 1.20702 1.21258 1.19881 1.84764 1.16996 1.38485 1.69665 0.88085 0.88659 0.87231 0.89443 0.90109 0.90059 0.87392 0.87602 0.91485 0.91379 0.93078 0.93156 0.96556 0.96507 0.93029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.20 10.51 36.01 0.38 0.18 16 2 C 0.17 1.51 8.48 -12.94 -0.11 1.40 16 3 N -0.29 -3.54 12.22 32.55 0.40 -3.14 16 4 N -0.25 -3.39 12.22 32.55 0.40 -2.99 16 5 C 0.16 1.83 7.37 -12.94 -0.10 1.74 16 6 C 0.19 2.01 3.12 -27.88 -0.09 1.93 16 7 H 0.12 1.20 7.16 -51.93 -0.37 0.83 16 8 C -0.16 -1.38 9.53 37.16 0.35 -1.03 16 9 O -0.34 -4.28 9.86 -39.23 -0.39 -4.67 16 10 C 0.46 6.27 7.93 36.01 0.29 6.56 16 11 O -0.50 -7.85 15.20 -18.75 -0.29 -8.14 16 12 C -0.11 -1.41 5.81 -27.88 -0.16 -1.57 16 13 C -0.11 -1.81 4.50 -26.73 -0.12 -1.93 16 14 C -0.11 -2.19 5.15 -26.73 -0.14 -2.32 16 15 C 0.02 0.51 4.97 -27.88 -0.14 0.38 16 16 C -0.52 -14.81 9.11 -34.44 -0.31 -15.12 16 17 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 18 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 19 N -0.90 -27.21 13.29 55.43 0.74 -26.48 16 20 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 24 O -0.22 -2.27 10.87 5.39 0.06 -2.21 16 25 H 0.10 0.16 8.14 -51.93 -0.42 -0.26 16 26 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 27 H 0.11 0.26 8.14 -51.93 -0.42 -0.17 16 28 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.11 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 34 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16 35 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 343.59 15.07 5.18 5.18 Total: -1.00 -34.71 343.59 -5.00 -39.70 By element: Atomic # 1 Polarization: 0.12 SS G_CDS: -5.83 Total: -5.70 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: -0.24 Total: -8.31 kcal Atomic # 7 Polarization: -34.14 SS G_CDS: 1.53 Total: -32.61 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -0.61 Total: -15.01 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.71 -5.00 -39.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805696995.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.853 kcal (2) G-P(sol) polarization free energy of solvation -34.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds