Wall clock time and date at job start Tue Mar 31 2020 06:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30281 * 126.28045 * 2 1 4 4 N 1.28666 * 109.38122 * 180.02562 * 3 2 1 5 5 C 1.30276 * 109.38173 * 0.02562 * 4 3 2 6 6 C 1.50703 * 126.28360 * 179.97438 * 5 4 3 7 7 H 1.08994 * 109.46888 * 165.02033 * 6 5 4 8 8 C 1.53007 * 109.46692 * 285.01999 * 6 5 4 9 9 O 1.45198 * 109.47160 * 45.02038 * 6 5 4 10 10 C 1.34221 * 116.99903 * 150.00217 * 9 6 5 11 11 O 1.20826 * 120.00367 * 359.97438 * 10 9 6 12 12 C 1.50706 * 120.00092 * 180.02562 * 10 9 6 13 13 C 1.52997 * 109.47238 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.46947 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.46891 * 179.97438 * 14 13 12 16 16 C 1.50706 * 109.46994 * 179.97438 * 15 14 13 17 17 H 1.07995 * 119.99838 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99810 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00437 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99747 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47494 * 89.99947 * 20 18 16 22 22 H 1.48508 * 109.46676 * 209.99921 * 20 18 16 23 23 H 1.48502 * 109.46977 * 329.99219 * 20 18 16 24 24 O 1.34359 * 126.28678 * 180.28821 * 2 1 3 25 25 H 1.08996 * 109.47348 * 89.97821 * 1 2 3 26 26 H 1.09005 * 109.46790 * 209.97936 * 1 2 3 27 27 H 1.09001 * 109.47049 * 329.97444 * 1 2 3 28 28 H 1.08998 * 109.46762 * 179.97438 * 8 6 5 29 29 H 1.08996 * 109.47318 * 299.99834 * 8 6 5 30 30 H 1.09000 * 109.47069 * 60.00060 * 8 6 5 31 31 H 1.09001 * 109.46953 * 299.99668 * 12 10 9 32 32 H 1.09000 * 109.47318 * 59.99266 * 12 10 9 33 33 H 1.09001 * 109.46832 * 299.99686 * 13 12 10 34 34 H 1.09004 * 109.47261 * 59.99705 * 13 12 10 35 35 H 1.08992 * 109.47554 * 299.99696 * 14 13 12 36 36 H 1.08996 * 109.47261 * 60.00229 * 14 13 12 37 37 H 1.08998 * 109.47844 * 299.99997 * 15 14 13 38 38 H 1.09001 * 109.47248 * 60.00689 * 15 14 13 39 39 H 0.96999 * 120.00397 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5090 0.6762 -0.0005 5 6 3.5655 -0.6253 -0.0015 6 6 4.8178 -1.4637 -0.0029 7 1 4.5676 -2.4909 0.2622 8 6 5.4485 -1.4358 -1.3966 9 8 5.7589 -0.9295 0.9652 10 6 6.5944 -1.8029 1.5488 11 8 6.5408 -2.9751 1.2608 12 6 7.5986 -1.3218 2.5643 13 6 8.4207 -2.5087 3.0706 14 6 9.4406 -2.0200 4.1011 15 6 10.2623 -3.2070 4.6079 16 6 11.2673 -2.7256 5.6225 17 1 11.3148 -1.6780 5.8803 18 6 12.1260 -3.6228 6.2214 19 7 12.0678 -4.8986 5.9078 20 14 13.3713 -3.0262 7.4795 21 1 12.7686 -3.0780 8.8357 22 1 14.5730 -3.8977 7.4382 23 1 13.7624 -1.6286 7.1646 24 8 2.3022 -1.0830 -0.0054 25 1 -0.3634 0.0004 -1.0276 26 1 -0.3633 -0.8902 0.5135 27 1 -0.3633 0.8898 0.5142 28 1 6.3545 -2.0417 -1.3975 29 1 4.7420 -1.8368 -2.1233 30 1 5.6987 -0.4085 -1.6617 31 1 8.2624 -0.5917 2.1012 32 1 7.0758 -0.8581 3.4009 33 1 7.7572 -3.2390 3.5336 34 1 8.9436 -2.9719 2.2338 35 1 10.1040 -1.2899 3.6378 36 1 8.9181 -1.5566 4.9380 37 1 9.5987 -3.9370 5.0714 38 1 10.7849 -3.6708 3.7712 39 1 12.6717 -5.5298 6.3295 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805696995.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:10 Heat of formation + Delta-G solvation = -95.716970 kcal Electronic energy + Delta-G solvation = -21011.168077 eV Core-core repulsion = 17533.517174 eV Total energy + Delta-G solvation = -3477.650903 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.46905 -41.83799 -38.32165 -37.41848 -36.64987 -34.86070 -34.59095 -32.74248 -31.54138 -29.07270 -27.81301 -26.10599 -24.80767 -23.73484 -23.09420 -21.91635 -21.44666 -18.93474 -18.83795 -18.56262 -18.36509 -17.69987 -17.47175 -16.51016 -16.16169 -15.86051 -15.69955 -14.80930 -14.65581 -14.46055 -14.06128 -13.84820 -13.67841 -13.65881 -13.59261 -13.36218 -13.33125 -13.09742 -12.84533 -12.73680 -12.36316 -12.22341 -12.19057 -12.18072 -12.05653 -11.73174 -11.37773 -11.29796 -11.06959 -10.73080 -10.53604 -8.18064 -6.29360 -0.17040 0.64925 1.05088 1.13811 1.41402 1.42963 1.54085 1.75875 2.42631 2.56771 3.14954 3.27361 3.46368 3.51435 3.67940 3.92376 3.97606 4.08836 4.13710 4.27797 4.42246 4.54864 4.55214 4.61916 4.63229 4.67755 4.78510 4.86722 4.96092 5.02078 5.13061 5.15421 5.32709 5.37118 5.57681 5.79446 5.89654 6.26790 6.55373 6.89101 7.07015 7.40020 8.93891 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.041466 B = 0.002291 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.083438 B =12218.027912 C =12422.765370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.182 3.818 3 N -0.329 5.329 4 N -0.280 5.280 5 C 0.152 3.848 6 C 0.184 3.816 7 H 0.120 0.880 8 C -0.157 4.157 9 O -0.343 6.343 10 C 0.472 3.528 11 O -0.527 6.527 12 C -0.102 4.102 13 C -0.099 4.099 14 C -0.098 4.098 15 C 0.019 3.981 16 C -0.541 4.541 17 H 0.065 0.935 18 C -0.006 4.006 19 N -0.936 5.936 20 Si 0.967 3.033 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.261 1.261 24 O -0.223 6.223 25 H 0.125 0.875 26 H 0.115 0.885 27 H 0.122 0.878 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.078 0.922 31 H 0.133 0.867 32 H 0.127 0.873 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.061 0.939 37 H -0.013 1.013 38 H -0.011 1.011 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.872 9.752 -15.145 29.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.028 4.028 3 N -0.175 5.175 4 N -0.127 5.127 5 C -0.061 4.061 6 C 0.127 3.873 7 H 0.138 0.862 8 C -0.215 4.215 9 O -0.260 6.260 10 C 0.317 3.683 11 O -0.415 6.415 12 C -0.139 4.139 13 C -0.137 4.137 14 C -0.135 4.135 15 C -0.019 4.019 16 C -0.579 4.579 17 H 0.083 0.917 18 C -0.204 4.204 19 N -0.577 5.577 20 Si 0.791 3.209 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.185 1.185 24 O -0.103 6.103 25 H 0.143 0.857 26 H 0.134 0.866 27 H 0.141 0.859 28 H 0.105 0.895 29 H 0.119 0.881 30 H 0.097 0.903 31 H 0.150 0.850 32 H 0.145 0.855 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.006 0.994 38 H 0.007 0.993 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -23.472 10.488 -15.222 29.877 hybrid contribution 0.417 -1.535 0.648 1.718 sum -23.054 8.953 -14.574 28.707 Atomic orbital electron populations 1.20830 0.75823 1.07614 1.07411 1.29307 0.99538 0.78398 0.95520 1.74432 0.96046 1.26940 1.20123 1.74364 1.12968 1.09771 1.15638 1.27367 0.85500 0.91260 1.01942 1.20659 0.80411 0.94889 0.91307 0.86237 1.22209 1.02728 1.04894 0.91624 1.86653 1.44848 1.41550 1.52982 1.24414 0.79981 0.84088 0.79836 1.90682 1.69172 1.19541 1.62077 1.21546 0.95147 1.00630 0.96605 1.21367 0.97107 0.96448 0.98789 1.21447 0.96511 0.98173 0.97389 1.19056 0.94074 0.94135 0.94588 1.21759 1.17993 0.94688 1.23471 0.91709 1.26053 0.99913 0.95022 0.99364 1.70115 1.39602 1.03254 1.44691 0.85419 0.77971 0.78593 0.78887 1.19823 1.20967 1.18466 1.84790 1.16695 1.38917 1.69852 0.85653 0.86610 0.85946 0.89517 0.88107 0.90287 0.84954 0.85520 0.92862 0.92517 0.91818 0.92042 0.99419 0.99270 0.92877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.24 10.51 71.24 0.75 0.51 16 2 C 0.18 3.03 8.48 88.34 0.75 3.78 16 3 N -0.33 -7.87 12.22 -165.50 -2.02 -9.90 16 4 N -0.28 -7.50 12.22 -165.50 -2.02 -9.52 16 5 C 0.15 3.45 7.37 88.34 0.65 4.10 16 6 C 0.18 3.84 3.12 29.85 0.09 3.93 16 7 H 0.12 2.41 7.16 -2.39 -0.02 2.39 16 8 C -0.16 -2.53 9.53 71.98 0.69 -1.85 16 9 O -0.34 -8.32 9.86 -51.33 -0.51 -8.83 16 10 C 0.47 12.31 7.93 71.24 0.56 12.88 16 11 O -0.53 -16.48 15.20 21.96 0.33 -16.15 16 12 C -0.10 -2.45 5.81 29.85 0.17 -2.28 16 13 C -0.10 -3.28 4.50 30.59 0.14 -3.14 16 14 C -0.10 -3.81 5.15 30.59 0.16 -3.65 16 15 C 0.02 0.99 4.97 29.85 0.15 1.14 16 16 C -0.54 -30.91 9.11 25.60 0.23 -30.68 16 17 H 0.06 3.49 7.74 -2.91 -0.02 3.47 16 18 C -0.01 -0.36 5.46 84.65 0.46 0.10 16 19 N -0.94 -58.06 13.29 21.45 0.28 -57.78 16 20 Si 0.97 44.54 29.54 68.60 2.03 46.57 16 21 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 22 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 23 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 24 O -0.22 -4.35 10.87 -3.62 -0.04 -4.39 16 25 H 0.13 -0.02 8.14 -2.39 -0.02 -0.04 16 26 H 0.12 0.05 8.14 -2.38 -0.02 0.03 16 27 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 28 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.13 2.58 8.14 -2.39 -0.02 2.56 16 32 H 0.13 2.57 8.14 -2.39 -0.02 2.55 16 33 H 0.05 1.88 8.10 -2.39 -0.02 1.87 16 34 H 0.06 1.98 8.10 -2.38 -0.02 1.96 16 35 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 37 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 38 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 39 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -76.76 343.59 3.90 -72.86 By element: Atomic # 1 Polarization: 1.24 SS G_CDS: 1.04 Total: 2.28 kcal Atomic # 6 Polarization: -19.96 SS G_CDS: 4.81 Total: -15.15 kcal Atomic # 7 Polarization: -73.44 SS G_CDS: -3.76 Total: -77.20 kcal Atomic # 8 Polarization: -29.15 SS G_CDS: -0.21 Total: -29.36 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -76.76 3.90 -72.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805696995.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.859 kcal (2) G-P(sol) polarization free energy of solvation -76.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds