Wall clock time and date at job start Tue Mar 31 2020 06:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 C 1.52999 * 109.46623 * 179.97438 * 3 2 1 5 5 C 1.50706 * 109.46953 * 179.97438 * 4 3 2 6 6 N 1.29941 * 126.28776 * 90.02413 * 5 4 3 7 7 O 1.21300 * 110.25544 * 179.97438 * 6 5 4 8 8 C 1.33649 * 109.80688 * 0.02562 * 7 6 5 9 9 C 1.50701 * 126.54822 * 179.97438 * 8 7 6 10 10 O 1.45199 * 109.46967 * 269.97440 * 9 8 7 11 11 C 1.34225 * 116.99789 * 180.02562 * 10 9 8 12 12 O 1.20825 * 120.00609 * 359.97438 * 11 10 9 13 13 C 1.50705 * 119.99902 * 179.97438 * 11 10 9 14 14 C 1.53007 * 109.46873 * 179.97438 * 13 11 10 15 15 C 1.50705 * 109.46873 * 179.97438 * 14 13 11 16 16 H 1.07997 * 119.99961 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99908 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99956 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99865 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46835 * 90.00250 * 19 17 15 21 21 H 1.48500 * 109.47156 * 210.00183 * 19 17 15 22 22 H 1.48500 * 109.47036 * 330.00043 * 19 17 15 23 23 N 1.31134 * 106.89752 * 359.76531 * 8 7 6 24 24 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 26 26 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 27 27 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 28 28 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 29 29 H 1.09000 * 109.47050 * 299.99699 * 3 2 1 30 30 H 1.09001 * 109.46801 * 59.99811 * 3 2 1 31 31 H 1.09000 * 109.47486 * 299.99829 * 4 3 2 32 32 H 1.09001 * 109.47362 * 60.00551 * 4 3 2 33 33 H 1.08998 * 109.47122 * 29.97147 * 9 8 7 34 34 H 1.08997 * 109.46960 * 149.97511 * 9 8 7 35 35 H 1.08998 * 109.47085 * 299.99873 * 13 11 10 36 36 H 1.09001 * 109.47162 * 59.99950 * 13 11 10 37 37 H 1.08998 * 109.47162 * 299.99827 * 14 13 11 38 38 H 1.08996 * 109.47332 * 60.00493 * 14 13 11 39 39 H 0.96992 * 119.99790 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0722 2.8635 0.0000 6 7 4.3285 3.5890 1.0471 7 8 4.7175 4.6879 0.7116 8 6 4.7467 4.7703 -0.6220 9 6 5.1690 5.9646 -1.4384 10 8 4.0139 6.8041 -1.7011 11 6 4.2209 7.9170 -2.4224 12 8 5.3305 8.1812 -2.8207 13 6 3.0691 8.8371 -2.7355 14 6 3.5728 10.0214 -3.5630 15 6 2.4209 10.9411 -3.8767 16 1 1.4289 10.7049 -3.5210 17 6 2.6337 12.0848 -4.6168 18 7 3.8418 12.3728 -5.0495 19 14 1.2058 13.2245 -5.0062 20 1 1.0774 14.2419 -3.9321 21 1 1.4535 13.9030 -6.3037 22 1 -0.0487 12.4345 -5.0923 23 7 4.3420 3.6118 -1.0845 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6765 1.9564 -0.8900 30 1 1.6764 1.9564 0.8900 31 1 3.9329 0.9289 0.8909 32 1 3.9336 0.9287 -0.8892 33 1 5.9156 6.5360 -0.8868 34 1 5.5950 5.6267 -2.3830 35 1 2.3131 8.2931 -3.3017 36 1 2.6333 9.2031 -1.8058 37 1 4.3286 10.5652 -2.9964 38 1 4.0088 9.6558 -4.4927 39 1 3.9914 13.1771 -5.5705 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812613849.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:57 Heat of formation + Delta-G solvation = -45.768123 kcal Electronic energy + Delta-G solvation = -20840.365495 eV Core-core repulsion = 17364.880536 eV Total energy + Delta-G solvation = -3475.484959 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.86978 -40.20766 -37.10685 -36.59551 -35.41946 -33.66422 -33.35048 -31.25867 -30.52552 -28.50600 -25.91806 -25.49362 -23.63862 -22.41085 -21.73243 -21.27026 -20.04582 -18.37595 -17.81313 -17.44104 -16.66344 -16.37522 -16.06237 -15.68632 -14.88930 -14.50378 -14.42229 -14.33633 -13.87792 -13.53763 -12.94423 -12.81682 -12.63084 -12.33032 -12.30018 -12.18322 -11.78402 -11.50820 -11.38073 -11.32247 -11.27272 -10.99388 -10.98028 -10.75172 -10.68064 -10.34931 -10.11588 -10.03960 -9.64309 -9.22988 -8.41409 -6.05342 -4.10436 0.70569 1.82670 2.32623 2.61681 3.07228 3.29814 3.35397 3.37308 3.40360 3.71221 4.41034 4.42540 4.50383 4.57637 4.70501 4.81281 4.96583 5.00702 5.11427 5.18425 5.30389 5.34753 5.38839 5.43922 5.50476 5.55876 5.67932 5.74695 5.84358 5.93118 6.02984 6.09510 6.40291 6.75107 7.61164 7.66722 7.86136 7.92923 8.07070 8.30011 8.96334 9.53986 11.05594 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.021944 B = 0.002599 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.666512 B =10769.001191 C =11736.524216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.117 4.117 4 C -0.028 4.028 5 C 0.171 3.829 6 N -0.378 5.378 7 O 0.089 5.911 8 C 0.187 3.813 9 C 0.158 3.842 10 O -0.360 6.360 11 C 0.464 3.536 12 O -0.497 6.497 13 C -0.101 4.101 14 C 0.033 3.967 15 C -0.530 4.530 16 H 0.059 0.941 17 C 0.059 3.941 18 N -0.889 5.889 19 Si 0.896 3.104 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.273 1.273 23 N -0.458 5.458 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.110 0.890 34 H 0.118 0.882 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.027 0.973 38 H 0.027 0.973 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.191 -22.821 10.873 25.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.155 4.155 4 C -0.067 4.067 5 C -0.102 4.102 6 N -0.084 5.084 7 O 0.029 5.971 8 C -0.034 4.034 9 C 0.082 3.918 10 O -0.278 6.278 11 C 0.308 3.692 12 O -0.382 6.382 13 C -0.139 4.139 14 C -0.005 4.005 15 C -0.568 4.568 16 H 0.077 0.923 17 C -0.143 4.143 18 N -0.527 5.527 19 Si 0.724 3.276 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.198 1.198 23 N -0.194 5.194 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.110 0.890 32 H 0.116 0.884 33 H 0.127 0.873 34 H 0.136 0.864 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.919 -23.201 11.155 25.760 hybrid contribution -0.476 0.820 -0.265 0.984 sum -1.396 -22.382 10.889 24.929 Atomic orbital electron populations 1.21771 0.95483 1.01752 1.02137 1.21499 0.96287 0.95848 1.02304 1.21619 0.92767 0.97914 1.03244 1.20044 0.96509 0.85357 1.04795 1.25915 1.00444 1.00520 0.83333 1.74651 1.16938 0.92915 1.23887 1.85326 1.60140 1.27126 1.24532 1.28179 0.96915 0.96154 0.82115 1.20899 0.87723 0.84746 0.98473 1.86632 1.37536 1.35203 1.68442 1.24943 0.92367 0.78485 0.73428 1.90672 1.26122 1.72307 1.49141 1.21850 0.93331 0.95373 1.03311 1.19053 0.96893 0.89675 0.94840 1.21133 0.94535 1.06784 1.34323 0.92262 1.25019 0.95766 0.97842 0.95679 1.69986 1.20489 1.25942 1.36295 0.86532 0.82466 0.80847 0.77775 1.20580 1.21169 1.19781 1.71925 1.16070 1.02016 1.29395 0.92584 0.92671 0.92486 0.91578 0.91785 0.90984 0.91503 0.88991 0.88426 0.87251 0.86404 0.88609 0.88604 0.95427 0.95429 0.92792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 37.16 0.37 -0.56 16 2 C -0.12 -0.72 5.93 -26.73 -0.16 -0.88 16 3 C -0.12 -0.90 5.20 -26.73 -0.14 -1.04 16 4 C -0.03 -0.23 5.84 -27.88 -0.16 -0.39 16 5 C 0.17 2.01 7.47 -156.37 -1.17 0.84 16 6 N -0.38 -4.87 12.16 30.90 0.38 -4.49 16 7 O 0.09 1.14 11.31 18.08 0.20 1.34 16 8 C 0.19 2.34 8.15 -13.05 -0.11 2.24 16 9 C 0.16 1.90 6.09 36.01 0.22 2.12 16 10 O -0.36 -5.49 10.20 -39.24 -0.40 -5.89 16 11 C 0.46 8.39 7.96 36.01 0.29 8.68 16 12 O -0.50 -10.28 15.73 -18.75 -0.29 -10.58 16 13 C -0.10 -1.95 5.75 -27.88 -0.16 -2.11 16 14 C 0.03 0.82 4.26 -27.88 -0.12 0.71 16 15 C -0.53 -14.43 9.11 -34.44 -0.31 -14.74 16 16 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -26.46 13.29 55.43 0.74 -25.73 16 19 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 23 N -0.46 -6.00 11.55 -9.86 -0.11 -6.11 16 24 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.11 1.11 8.13 -51.93 -0.42 0.69 16 34 H 0.12 1.32 8.13 -51.93 -0.42 0.90 16 35 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 36 H 0.10 1.69 8.14 -51.93 -0.42 1.26 16 37 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 38 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 39 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 344.31 15.07 5.19 5.19 Total: -1.00 -31.94 344.31 -6.75 -38.70 By element: Atomic # 1 Polarization: 0.92 SS G_CDS: -5.88 Total: -4.96 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: -1.55 Total: -3.56 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: 1.00 Total: -36.33 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -0.49 Total: -15.12 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.94 -6.75 -38.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812613849.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.070 kcal (2) G-P(sol) polarization free energy of solvation -31.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds