Wall clock time and date at job start Tue Mar 31 2020 06:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 C 1.52999 * 109.46623 * 179.97438 * 3 2 1 5 5 C 1.50706 * 109.46953 * 179.97438 * 4 3 2 6 6 N 1.29941 * 126.28776 * 90.02413 * 5 4 3 7 7 O 1.21300 * 110.25544 * 179.97438 * 6 5 4 8 8 C 1.33649 * 109.80688 * 0.02562 * 7 6 5 9 9 C 1.50701 * 126.54822 * 179.97438 * 8 7 6 10 10 O 1.45199 * 109.46967 * 269.97440 * 9 8 7 11 11 C 1.34225 * 116.99789 * 180.02562 * 10 9 8 12 12 O 1.20825 * 120.00609 * 359.97438 * 11 10 9 13 13 C 1.50705 * 119.99902 * 179.97438 * 11 10 9 14 14 C 1.53007 * 109.46873 * 179.97438 * 13 11 10 15 15 C 1.50705 * 109.46873 * 179.97438 * 14 13 11 16 16 H 1.07997 * 119.99961 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99908 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99956 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99865 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46835 * 90.00250 * 19 17 15 21 21 H 1.48500 * 109.47156 * 210.00183 * 19 17 15 22 22 H 1.48500 * 109.47036 * 330.00043 * 19 17 15 23 23 N 1.31134 * 106.89752 * 359.76531 * 8 7 6 24 24 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 26 26 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 27 27 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 28 28 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 29 29 H 1.09000 * 109.47050 * 299.99699 * 3 2 1 30 30 H 1.09001 * 109.46801 * 59.99811 * 3 2 1 31 31 H 1.09000 * 109.47486 * 299.99829 * 4 3 2 32 32 H 1.09001 * 109.47362 * 60.00551 * 4 3 2 33 33 H 1.08998 * 109.47122 * 29.97147 * 9 8 7 34 34 H 1.08997 * 109.46960 * 149.97511 * 9 8 7 35 35 H 1.08998 * 109.47085 * 299.99873 * 13 11 10 36 36 H 1.09001 * 109.47162 * 59.99950 * 13 11 10 37 37 H 1.08998 * 109.47162 * 299.99827 * 14 13 11 38 38 H 1.08996 * 109.47332 * 60.00493 * 14 13 11 39 39 H 0.96992 * 119.99790 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0722 2.8635 0.0000 6 7 4.3285 3.5890 1.0471 7 8 4.7175 4.6879 0.7116 8 6 4.7467 4.7703 -0.6220 9 6 5.1690 5.9646 -1.4384 10 8 4.0139 6.8041 -1.7011 11 6 4.2209 7.9170 -2.4224 12 8 5.3305 8.1812 -2.8207 13 6 3.0691 8.8371 -2.7355 14 6 3.5728 10.0214 -3.5630 15 6 2.4209 10.9411 -3.8767 16 1 1.4289 10.7049 -3.5210 17 6 2.6337 12.0848 -4.6168 18 7 3.8418 12.3728 -5.0495 19 14 1.2058 13.2245 -5.0062 20 1 1.0774 14.2419 -3.9321 21 1 1.4535 13.9030 -6.3037 22 1 -0.0487 12.4345 -5.0923 23 7 4.3420 3.6118 -1.0845 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6765 1.9564 -0.8900 30 1 1.6764 1.9564 0.8900 31 1 3.9329 0.9289 0.8909 32 1 3.9336 0.9287 -0.8892 33 1 5.9156 6.5360 -0.8868 34 1 5.5950 5.6267 -2.3830 35 1 2.3131 8.2931 -3.3017 36 1 2.6333 9.2031 -1.8058 37 1 4.3286 10.5652 -2.9964 38 1 4.0088 9.6558 -4.4927 39 1 3.9914 13.1771 -5.5705 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812613849.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:57 Heat of formation + Delta-G solvation = -65.294619 kcal Electronic energy + Delta-G solvation = -20841.212227 eV Core-core repulsion = 17364.880536 eV Total energy + Delta-G solvation = -3476.331691 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -46.83373 -41.61426 -38.00154 -37.84581 -36.20586 -35.63724 -34.29385 -33.12981 -31.20619 -29.66646 -27.75673 -26.20616 -24.67232 -24.05639 -22.49612 -21.97822 -21.60549 -19.46156 -18.98883 -18.80781 -18.12436 -17.79333 -17.40586 -16.47083 -16.41045 -15.79481 -15.62136 -15.15018 -14.92433 -14.35445 -14.21330 -14.11196 -13.98480 -13.58425 -13.44084 -13.18429 -12.94413 -12.82333 -12.51281 -12.47037 -12.20355 -12.19705 -12.01051 -11.92792 -11.90848 -11.76042 -11.53575 -11.50186 -11.29835 -11.08789 -10.55418 -8.18387 -6.31290 -0.30343 0.85581 1.16648 1.30551 1.45512 1.46777 1.57814 1.93991 2.41995 2.47150 2.83940 3.15893 3.60458 3.81243 3.89675 3.91636 4.00719 4.06192 4.19914 4.39936 4.45628 4.46490 4.47187 4.63565 4.67137 4.72986 4.88320 4.89366 4.97996 5.04224 5.19254 5.23105 5.33282 5.44240 5.49856 5.58817 5.83118 6.15099 6.68796 6.87179 6.90242 7.38747 8.93966 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.021944 B = 0.002599 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.666512 B =10769.001191 C =11736.524216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.117 4.117 3 C -0.112 4.112 4 C -0.028 4.028 5 C 0.172 3.828 6 N -0.393 5.393 7 O 0.083 5.917 8 C 0.189 3.811 9 C 0.156 3.844 10 O -0.356 6.356 11 C 0.478 3.522 12 O -0.529 6.529 13 C -0.094 4.094 14 C 0.037 3.963 15 C -0.543 4.543 16 H 0.076 0.924 17 C -0.003 4.003 18 N -0.934 5.934 19 Si 0.971 3.029 20 H -0.272 1.272 21 H -0.287 1.287 22 H -0.257 1.257 23 N -0.474 5.474 24 H 0.065 0.935 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.131 0.869 34 H 0.129 0.871 35 H 0.116 0.884 36 H 0.118 0.882 37 H -0.005 1.005 38 H -0.006 1.006 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.647 -24.085 11.562 26.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.155 4.155 3 C -0.150 4.150 4 C -0.067 4.067 5 C -0.101 4.101 6 N -0.100 5.100 7 O 0.025 5.975 8 C -0.032 4.032 9 C 0.081 3.919 10 O -0.272 6.272 11 C 0.323 3.677 12 O -0.417 6.417 13 C -0.131 4.131 14 C 0.000 4.000 15 C -0.581 4.581 16 H 0.094 0.906 17 C -0.201 4.201 18 N -0.574 5.574 19 Si 0.795 3.205 20 H -0.198 1.198 21 H -0.212 1.212 22 H -0.181 1.181 23 N -0.210 5.210 24 H 0.084 0.916 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.127 0.873 32 H 0.129 0.871 33 H 0.149 0.851 34 H 0.147 0.853 35 H 0.134 0.866 36 H 0.136 0.864 37 H 0.013 0.987 38 H 0.012 0.988 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.393 -24.486 11.870 27.316 hybrid contribution 0.008 1.108 -0.435 1.190 sum -2.385 -23.378 11.434 26.134 Atomic orbital electron populations 1.21793 0.95645 1.02257 1.01676 1.21480 0.96101 0.94619 1.03279 1.21565 0.92457 0.98970 1.02048 1.20272 0.96601 0.83497 1.06313 1.26559 0.99331 1.01566 0.82625 1.74652 1.17795 0.93145 1.24450 1.85311 1.60339 1.27303 1.24546 1.28171 0.96795 0.96137 0.82137 1.21180 0.86848 0.84477 0.99438 1.86545 1.38886 1.34389 1.67409 1.24450 0.91283 0.78870 0.73123 1.90671 1.27187 1.73259 1.50582 1.21569 0.93966 0.93941 1.03640 1.18828 0.95763 0.91568 0.93862 1.21639 0.95632 1.07032 1.33813 0.90581 1.26048 0.98561 0.99883 0.95598 1.70142 1.23063 1.26745 1.37426 0.85360 0.79175 0.78558 0.77408 1.19798 1.21247 1.18136 1.71950 1.16499 1.02458 1.30120 0.91601 0.93007 0.93120 0.90731 0.90652 0.92401 0.92483 0.87283 0.87057 0.85150 0.85334 0.86563 0.86367 0.98667 0.98771 0.92772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.91 71.98 0.71 -0.95 16 2 C -0.12 -1.16 5.93 30.60 0.18 -0.98 16 3 C -0.11 -1.57 5.20 30.60 0.16 -1.41 16 4 C -0.03 -0.41 5.84 29.85 0.17 -0.23 16 5 C 0.17 3.83 7.47 138.47 1.03 4.86 16 6 N -0.39 -9.71 12.16 -60.31 -0.73 -10.44 16 7 O 0.08 2.05 11.31 74.78 0.85 2.89 16 8 C 0.19 4.50 8.15 88.38 0.72 5.22 16 9 C 0.16 3.56 6.09 71.24 0.43 3.99 16 10 O -0.36 -10.30 10.20 -51.37 -0.52 -10.83 16 11 C 0.48 16.94 7.96 71.24 0.57 17.51 16 12 O -0.53 -22.02 15.73 21.97 0.35 -21.68 16 13 C -0.09 -3.53 5.75 29.85 0.17 -3.36 16 14 C 0.04 1.92 4.26 29.85 0.13 2.04 16 15 C -0.54 -29.49 9.11 25.60 0.23 -29.26 16 16 H 0.08 3.78 7.74 -2.91 -0.02 3.76 16 17 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 18 N -0.93 -56.84 13.29 21.45 0.28 -56.56 16 19 Si 0.97 43.02 29.54 68.60 2.03 45.04 16 20 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 21 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 22 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 23 N -0.47 -11.83 11.55 -303.18 -3.50 -15.34 16 24 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 25 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.13 2.46 8.13 -2.39 -0.02 2.44 16 34 H 0.13 2.72 8.13 -2.39 -0.02 2.70 16 35 H 0.12 3.91 8.14 -2.39 -0.02 3.89 16 36 H 0.12 3.93 8.14 -2.39 -0.02 3.91 16 37 H -0.01 -0.29 8.10 -2.39 -0.02 -0.31 16 38 H -0.01 -0.35 8.10 -2.39 -0.02 -0.37 16 39 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -69.29 344.31 4.76 -64.53 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: 1.04 Total: 4.64 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: 4.98 Total: -2.27 kcal Atomic # 7 Polarization: -78.38 SS G_CDS: -3.95 Total: -82.33 kcal Atomic # 8 Polarization: -30.28 SS G_CDS: 0.67 Total: -29.61 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Total: -69.29 4.76 -64.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812613849.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.764 kcal (2) G-P(sol) polarization free energy of solvation -69.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds