Wall clock time and date at job start Tue Mar 31 2020 06:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46562 * 2 1 4 4 C 1.52997 * 109.47482 * 239.99979 * 2 1 3 5 5 C 1.50694 * 109.47117 * 119.99519 * 2 1 3 6 6 N 1.30278 * 126.28387 * 60.03077 * 5 2 1 7 7 N 1.28666 * 109.38396 * 179.97438 * 6 5 2 8 8 C 1.30268 * 109.38108 * 359.97438 * 7 6 5 9 9 C 1.50704 * 126.28272 * 179.97438 * 8 7 6 10 10 O 1.45196 * 109.47016 * 90.02494 * 9 8 7 11 11 C 1.34234 * 116.99938 * 179.97438 * 10 9 8 12 12 O 1.20822 * 119.99973 * 0.02562 * 11 10 9 13 13 C 1.50700 * 120.00068 * 179.97438 * 11 10 9 14 14 C 1.52992 * 109.47257 * 180.02562 * 13 11 10 15 15 C 1.50700 * 109.47257 * 179.97438 * 14 13 11 16 16 H 1.07999 * 119.99988 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00045 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00037 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00274 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47292 * 59.98803 * 19 17 15 21 21 H 1.48495 * 109.47425 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46765 * 299.99473 * 19 17 15 23 23 O 1.34363 * 107.43787 * 0.24159 * 8 7 6 24 24 H 1.09003 * 109.47242 * 299.99580 * 1 2 3 25 25 H 1.09000 * 109.46997 * 60.00396 * 1 2 3 26 26 H 1.09008 * 109.46586 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47113 * 179.97438 * 3 2 1 28 28 H 1.09005 * 109.47580 * 299.99520 * 3 2 1 29 29 H 1.08996 * 109.47650 * 60.00360 * 3 2 1 30 30 H 1.08998 * 109.46719 * 299.99905 * 4 2 1 31 31 H 1.08998 * 109.46841 * 59.99576 * 4 2 1 32 32 H 1.08996 * 109.46988 * 180.02562 * 4 2 1 33 33 H 1.08996 * 109.46943 * 330.02249 * 9 8 7 34 34 H 1.08999 * 109.47285 * 210.02389 * 9 8 7 35 35 H 1.09004 * 109.46932 * 300.00373 * 13 11 10 36 36 H 1.08997 * 109.47392 * 59.99712 * 13 11 10 37 37 H 1.09004 * 109.47330 * 299.99977 * 14 13 11 38 38 H 1.09005 * 109.47124 * 59.99773 * 14 13 11 39 39 H 0.97000 * 120.00297 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0323 -0.7103 1.2305 6 7 1.7947 -1.9490 1.5566 7 7 2.3817 -2.2176 2.6696 8 6 3.0142 -1.1597 3.0912 9 6 3.8267 -1.0512 4.3558 10 8 5.2055 -1.4114 4.0775 11 6 6.0668 -1.3659 5.1061 12 8 5.6812 -1.0364 6.2027 13 6 7.5144 -1.7268 4.8934 14 6 8.2728 -1.5936 6.2154 15 6 9.7203 -1.9551 6.0027 16 1 10.0647 -2.2507 5.0228 17 6 10.6046 -1.9095 7.0595 18 7 10.1851 -1.5500 8.2530 19 14 12.3990 -2.3568 6.7959 20 1 12.9947 -1.4416 5.7896 21 1 13.1351 -2.2277 8.0791 22 1 12.4937 -3.7566 6.3091 23 8 2.8043 -0.1812 2.1946 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6768 -1.7489 -1.2491 31 1 1.6767 -0.2074 -2.1391 32 1 3.1301 -0.7216 -1.2489 33 1 3.4196 -1.7265 5.1083 34 1 3.7866 -0.0271 4.7268 35 1 7.5840 -2.7545 4.5368 36 1 7.9514 -1.0555 4.1541 37 1 8.2032 -0.5660 6.5723 38 1 7.8357 -2.2652 6.9543 39 1 10.8074 -1.5175 8.9964 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812617852.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:05 Heat of formation + Delta-G solvation = -68.597187 kcal Electronic energy + Delta-G solvation = -21344.789018 eV Core-core repulsion = 17868.314117 eV Total energy + Delta-G solvation = -3476.474901 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -44.52143 -40.18842 -37.64467 -36.47698 -36.42648 -33.65718 -32.07576 -31.12794 -28.25775 -27.84223 -27.68450 -25.89169 -24.24295 -22.91659 -22.09089 -20.51958 -20.02860 -17.86359 -17.50906 -17.23906 -16.53716 -16.42587 -15.92151 -15.72823 -14.61019 -14.54425 -14.48100 -14.10040 -13.88094 -12.92813 -12.83153 -12.67769 -12.57650 -12.53336 -12.34869 -12.29736 -12.20724 -12.04230 -11.65368 -11.58567 -11.29325 -11.13587 -10.97239 -10.73598 -10.70097 -10.20189 -10.10843 -9.86546 -9.59371 -9.24028 -8.41015 -6.05003 -4.10284 0.73768 1.78963 2.06521 2.62185 2.96832 3.31123 3.35882 3.37633 3.48648 3.95523 4.20922 4.27571 4.41702 4.45250 4.72961 4.87235 5.04986 5.09442 5.11424 5.13941 5.23756 5.25061 5.30524 5.31584 5.33741 5.40118 5.44632 5.62755 5.72950 5.77276 6.03020 6.09817 6.41392 6.75597 7.60977 7.66851 7.93060 8.02932 8.07704 8.30254 8.96224 9.54049 11.05905 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.035647 B = 0.002625 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.291182 B =10663.128496 C =10972.701191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.031 3.969 3 C -0.150 4.150 4 C -0.142 4.142 5 C 0.179 3.821 6 N -0.284 5.284 7 N -0.259 5.259 8 C 0.163 3.837 9 C 0.162 3.838 10 O -0.361 6.361 11 C 0.464 3.536 12 O -0.498 6.498 13 C -0.101 4.101 14 C 0.033 3.967 15 C -0.530 4.530 16 H 0.059 0.941 17 C 0.060 3.940 18 N -0.889 5.889 19 Si 0.897 3.103 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 O -0.213 6.213 24 H 0.061 0.939 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.120 0.880 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.027 0.973 38 H 0.027 0.973 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.964 5.542 -18.033 26.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.029 3.971 3 C -0.208 4.208 4 C -0.200 4.200 5 C -0.032 4.032 6 N -0.131 5.131 7 N -0.108 5.108 8 C -0.048 4.048 9 C 0.087 3.913 10 O -0.279 6.279 11 C 0.307 3.693 12 O -0.383 6.383 13 C -0.139 4.139 14 C -0.004 4.004 15 C -0.569 4.569 16 H 0.077 0.923 17 C -0.143 4.143 18 N -0.527 5.527 19 Si 0.724 3.276 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.201 1.201 23 O -0.091 6.091 24 H 0.080 0.920 25 H 0.096 0.904 26 H 0.091 0.909 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.138 0.862 34 H 0.122 0.878 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.045 0.955 38 H 0.046 0.954 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.486 4.483 -17.518 26.583 hybrid contribution 1.344 0.956 0.168 1.658 sum -18.142 5.439 -17.350 25.686 Atomic orbital electron populations 1.21944 0.91088 1.03784 1.03081 1.19288 0.96770 0.94903 0.86094 1.21968 1.02295 0.93127 1.03377 1.21943 1.01924 1.01313 0.94788 1.28099 0.92102 0.90677 0.92326 1.74392 1.19426 1.12052 1.07203 1.74446 1.08699 1.22686 1.04993 1.27345 1.00348 0.82596 0.94500 1.20847 0.79471 1.04426 0.86583 1.86637 1.18040 1.80929 1.42315 1.24949 0.89373 0.73363 0.81601 1.90666 1.78733 1.43318 1.25599 1.21845 0.83656 1.03288 1.05069 1.19045 0.93635 0.98846 0.88885 1.21095 0.93318 1.46831 0.95617 0.92311 1.25015 0.99025 0.95115 0.95114 1.69975 1.35317 1.47164 1.00278 0.86587 0.84535 0.79054 0.77402 1.20158 1.21229 1.20120 1.84796 1.54299 1.41469 1.28581 0.92018 0.90375 0.90902 0.91460 0.90491 0.91642 0.90893 0.90363 0.91822 0.86221 0.87845 0.88567 0.88685 0.95472 0.95415 0.92726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 8.46 37.16 0.31 -0.51 16 2 C 0.03 0.23 0.99 -155.66 -0.15 0.08 16 3 C -0.15 -0.91 8.05 37.16 0.30 -0.61 16 4 C -0.14 -0.90 8.46 37.16 0.31 -0.59 16 5 C 0.18 2.06 6.57 -12.94 -0.09 1.97 16 6 N -0.28 -3.96 12.22 32.55 0.40 -3.56 16 7 N -0.26 -3.96 12.22 32.55 0.40 -3.56 16 8 C 0.16 2.26 8.12 -12.94 -0.11 2.15 16 9 C 0.16 2.17 6.09 36.01 0.22 2.39 16 10 O -0.36 -5.87 10.20 -39.27 -0.40 -6.27 16 11 C 0.46 8.72 7.96 36.01 0.29 9.00 16 12 O -0.50 -10.63 15.73 -18.75 -0.29 -10.93 16 13 C -0.10 -2.00 5.75 -27.89 -0.16 -2.16 16 14 C 0.03 0.85 4.26 -27.89 -0.12 0.73 16 15 C -0.53 -14.60 9.11 -34.44 -0.31 -14.92 16 16 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16 19 Si 0.90 21.26 29.54 -169.99 -5.02 16.23 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 O -0.21 -2.71 10.32 5.37 0.06 -2.66 16 24 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.12 1.48 8.13 -51.93 -0.42 1.06 16 34 H 0.10 1.20 8.13 -51.93 -0.42 0.78 16 35 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 36 H 0.09 1.72 8.14 -51.93 -0.42 1.29 16 37 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 38 H 0.03 0.77 8.10 -51.93 -0.42 0.35 16 39 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 342.21 15.07 5.16 5.16 Total: -1.00 -33.14 342.21 -4.45 -37.59 By element: Atomic # 1 Polarization: 0.67 SS G_CDS: -5.88 Total: -5.20 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: 0.40 Total: -0.87 kcal Atomic # 7 Polarization: -34.59 SS G_CDS: 1.53 Total: -33.06 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.64 Total: -19.85 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.14 -4.45 -37.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812617852.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.003 kcal (2) G-P(sol) polarization free energy of solvation -33.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds