Wall clock time and date at job start Tue Mar 31 2020 05:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30434 * 125.99119 * 2 1 4 4 N 1.39938 * 108.91714 * 180.02562 * 3 2 1 5 5 C 1.46498 * 125.74489 * 179.97438 * 4 3 2 6 6 C 1.34221 * 108.51253 * 0.02562 * 4 3 2 7 7 C 1.50704 * 126.29684 * 179.97438 * 6 4 3 8 8 C 1.38125 * 107.41184 * 359.97438 * 6 4 3 9 9 C 1.47285 * 126.43080 * 179.73893 * 8 6 4 10 10 O 1.21525 * 119.99856 * 90.00012 * 9 8 6 11 11 O 1.34752 * 120.00072 * 270.00179 * 9 8 6 12 12 C 1.45205 * 116.99789 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.46791 * 179.97438 * 12 11 9 14 14 O 1.42901 * 109.47016 * 64.99859 * 13 12 11 15 15 C 1.42900 * 113.99910 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.47242 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00120 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00350 * 180.02562 * 16 15 14 19 19 N 1.31522 * 119.99872 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 120.00389 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46681 * 59.99516 * 20 18 16 22 22 H 1.48493 * 109.47071 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46814 * 299.99934 * 20 18 16 24 24 H 1.09004 * 109.47373 * 269.97438 * 1 2 3 25 25 H 1.09001 * 109.47191 * 29.97492 * 1 2 3 26 26 H 1.09001 * 109.47031 * 149.97257 * 1 2 3 27 27 H 1.09001 * 109.47308 * 270.03208 * 5 4 3 28 28 H 1.09003 * 109.46835 * 30.03192 * 5 4 3 29 29 H 1.08991 * 109.47101 * 150.02435 * 5 4 3 30 30 H 1.08999 * 109.46665 * 270.04035 * 7 6 4 31 31 H 1.08995 * 109.46944 * 30.03843 * 7 6 4 32 32 H 1.08995 * 109.46930 * 150.03952 * 7 6 4 33 33 H 1.08997 * 109.47028 * 299.99880 * 12 11 9 34 34 H 1.09001 * 109.47159 * 60.00001 * 12 11 9 35 35 H 1.08997 * 109.47046 * 184.99617 * 13 12 11 36 36 H 1.09002 * 109.47321 * 304.99915 * 13 12 11 37 37 H 1.08994 * 109.47503 * 300.00058 * 15 14 13 38 38 H 1.09007 * 109.47152 * 60.00352 * 15 14 13 39 39 H 0.96995 * 119.99918 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2734 1.0553 0.0000 4 7 3.6111 0.6445 -0.0006 5 6 4.7783 1.5298 -0.0013 6 6 3.6448 -0.6973 -0.0015 7 6 4.8815 -1.5587 -0.0029 8 6 2.3377 -1.1436 -0.0009 9 6 1.8928 -2.5476 -0.0070 10 8 1.7115 -3.1321 1.0429 11 8 1.6868 -3.1841 -1.1767 12 6 1.2495 -4.5670 -1.1066 13 6 1.0692 -5.1172 -2.5228 14 8 2.3353 -5.1541 -3.1843 15 6 2.2783 -5.6556 -4.5212 16 6 3.6616 -5.6506 -5.1191 17 1 4.5004 -5.2992 -4.5366 18 6 3.8562 -6.0938 -6.4101 19 7 2.8347 -6.5213 -7.1197 20 14 5.5711 -6.0883 -7.1510 21 1 6.4647 -6.9508 -6.3370 22 1 5.5117 -6.6093 -8.5403 23 1 6.1000 -4.7007 -7.1644 24 1 -0.3634 -0.0005 1.0277 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3633 -0.8898 -0.5143 27 1 5.0670 1.7497 -1.0292 28 1 4.5303 2.4583 0.5130 29 1 5.6060 1.0403 0.5118 30 1 5.1792 -1.7650 -1.0310 31 1 5.6884 -1.0367 0.5113 32 1 4.6710 -2.4972 0.5098 33 1 1.9979 -5.1584 -0.5792 34 1 0.3009 -4.6215 -0.5725 35 1 0.6567 -6.1248 -2.4714 36 1 0.3875 -4.4734 -3.0787 37 1 1.8910 -6.6744 -4.5109 38 1 1.6215 -5.0233 -5.1188 39 1 2.9716 -6.8327 -8.0280 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815177001.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:56 Heat of formation + Delta-G solvation = -65.520328 kcal Electronic energy + Delta-G solvation = -21811.082051 eV Core-core repulsion = 18334.740573 eV Total energy + Delta-G solvation = -3476.341479 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.63675 -39.80004 -36.96949 -35.85084 -34.50775 -32.77349 -32.34233 -30.11509 -29.78638 -27.83317 -26.87735 -25.96905 -23.25022 -22.35829 -21.70733 -20.02754 -19.72969 -17.74214 -16.92826 -16.45382 -16.26271 -15.95759 -15.70974 -15.17700 -14.59264 -14.34422 -14.09876 -13.78361 -13.68840 -13.41018 -13.37536 -12.94541 -12.73718 -12.59061 -12.49290 -12.18232 -12.09974 -11.94260 -11.39946 -11.00634 -10.92378 -10.84236 -10.74558 -10.35403 -10.29129 -10.04327 -9.35005 -9.13873 -8.86402 -8.69739 -8.20241 -6.11828 -4.13530 1.50392 2.09062 2.25234 2.27420 3.11963 3.31084 3.33866 3.37427 4.20924 4.30009 4.32267 4.64865 4.75008 4.77526 4.87002 5.08509 5.09534 5.12514 5.24633 5.28162 5.32276 5.45446 5.49166 5.54728 5.66049 5.70100 5.80457 5.90142 5.96858 6.12956 6.32754 6.63352 6.66891 7.06847 7.41042 7.44268 7.77606 7.95376 8.13169 8.53730 8.98622 9.51033 10.99766 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.016652 B = 0.003870 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.033564 B = 7232.937464 C = 8186.262447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.122 3.878 3 N -0.298 5.298 4 N -0.361 5.361 5 C 0.098 3.902 6 C 0.144 3.856 7 C -0.103 4.103 8 C -0.269 4.269 9 C 0.550 3.450 10 O -0.509 6.509 11 O -0.332 6.332 12 C 0.072 3.928 13 C 0.062 3.938 14 O -0.391 6.391 15 C 0.194 3.806 16 C -0.515 4.515 17 H 0.066 0.934 18 C 0.057 3.943 19 N -0.899 5.899 20 Si 0.908 3.092 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.275 1.275 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.050 0.950 37 H 0.006 0.994 38 H 0.007 0.993 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.035 13.482 15.157 20.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.045 4.045 3 N -0.119 5.119 4 N -0.141 5.141 5 C -0.043 4.043 6 C 0.012 3.988 7 C -0.161 4.161 8 C -0.282 4.282 9 C 0.392 3.608 10 O -0.397 6.397 11 O -0.248 6.248 12 C -0.002 4.002 13 C -0.016 4.016 14 O -0.311 6.311 15 C 0.120 3.880 16 C -0.553 4.553 17 H 0.084 0.916 18 C -0.144 4.144 19 N -0.538 5.538 20 Si 0.735 3.265 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.200 1.200 24 H 0.101 0.899 25 H 0.100 0.900 26 H 0.098 0.902 27 H 0.100 0.900 28 H 0.111 0.889 29 H 0.109 0.891 30 H 0.116 0.884 31 H 0.097 0.903 32 H 0.108 0.892 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.024 0.976 38 H 0.025 0.975 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.194 14.641 15.342 21.208 hybrid contribution 0.589 -1.083 -0.624 1.382 sum 0.782 13.557 14.717 20.025 Atomic orbital electron populations 1.20288 0.85900 1.04013 1.03468 1.22267 0.96908 0.88497 0.96821 1.77102 0.85826 1.22122 1.26871 1.48085 1.06005 1.03959 1.56008 1.21966 0.83949 0.94349 1.04056 1.21331 0.95977 0.84714 0.96731 1.20658 0.91919 0.98598 1.04914 1.18949 0.92516 0.91369 1.25350 1.20091 0.73175 0.85646 0.81838 1.90814 1.47926 1.67631 1.33344 1.86785 1.77372 1.27600 1.33024 1.23245 1.00130 0.78515 0.98305 1.22323 0.89449 0.98741 0.91062 1.87908 1.26253 1.86387 1.30529 1.20226 0.98128 0.92886 0.76728 1.21005 0.93321 1.42874 0.98129 0.91602 1.24942 0.97771 0.95118 0.96607 1.69951 1.30367 1.43070 1.10402 0.86394 0.83583 0.78555 0.77932 1.20004 1.21131 1.20031 0.89907 0.90033 0.90163 0.90013 0.88902 0.89130 0.88379 0.90306 0.89179 0.90474 0.90355 0.91938 0.93183 0.97612 0.97513 0.92575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 10.28 36.00 0.37 -0.47 16 2 C 0.12 1.72 7.27 -82.01 -0.60 1.12 16 3 N -0.30 -4.15 12.50 33.90 0.42 -3.73 16 4 N -0.36 -4.33 3.98 -63.33 -0.25 -4.58 16 5 C 0.10 0.66 11.24 59.85 0.67 1.34 16 6 C 0.14 1.88 7.01 -81.59 -0.57 1.31 16 7 C -0.10 -1.04 9.93 36.01 0.36 -0.68 16 8 C -0.27 -4.11 6.00 -105.08 -0.63 -4.75 16 9 C 0.55 9.20 7.12 34.41 0.24 9.44 16 10 O -0.51 -9.16 16.90 -19.29 -0.33 -9.48 16 11 O -0.33 -5.94 10.20 -43.42 -0.44 -6.38 16 12 C 0.07 1.17 5.85 37.16 0.22 1.38 16 13 C 0.06 1.14 6.33 37.16 0.24 1.38 16 14 O -0.39 -9.52 10.30 -38.80 -0.40 -9.92 16 15 C 0.19 5.34 5.69 36.00 0.20 5.54 16 16 C -0.52 -15.17 9.43 -34.44 -0.32 -15.50 16 17 H 0.07 1.92 7.81 -52.48 -0.41 1.51 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 20 Si 0.91 21.71 29.54 -169.99 -5.02 16.69 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 23 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 24 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.08 0.85 8.00 -51.93 -0.42 0.43 16 27 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.09 0.39 7.02 -51.93 -0.36 0.02 16 30 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.08 0.53 7.05 -51.93 -0.37 0.17 16 32 H 0.09 0.98 7.96 -51.93 -0.41 0.57 16 33 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 38 H 0.01 0.20 8.14 -51.92 -0.42 -0.22 16 39 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 345.34 15.07 5.20 5.20 Total: -1.00 -35.96 345.34 -5.75 -41.71 By element: Atomic # 1 Polarization: 0.66 SS G_CDS: -5.75 Total: -5.09 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: 0.08 Total: 1.66 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: 0.91 Total: -34.38 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -1.17 Total: -25.79 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -35.96 -5.75 -41.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815177001.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.811 kcal (2) G-P(sol) polarization free energy of solvation -35.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds