Wall clock time and date at job start Tue Mar 31 2020 05:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30434 * 125.99119 * 2 1 4 4 N 1.39938 * 108.91714 * 180.02562 * 3 2 1 5 5 C 1.46498 * 125.74489 * 179.97438 * 4 3 2 6 6 C 1.34221 * 108.51253 * 0.02562 * 4 3 2 7 7 C 1.50704 * 126.29684 * 179.97438 * 6 4 3 8 8 C 1.38125 * 107.41184 * 359.97438 * 6 4 3 9 9 C 1.47285 * 126.43080 * 179.73893 * 8 6 4 10 10 O 1.21525 * 119.99856 * 90.00012 * 9 8 6 11 11 O 1.34752 * 120.00072 * 270.00179 * 9 8 6 12 12 C 1.45205 * 116.99789 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.46791 * 179.97438 * 12 11 9 14 14 O 1.42901 * 109.47016 * 64.99859 * 13 12 11 15 15 C 1.42900 * 113.99910 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.47242 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00120 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00350 * 180.02562 * 16 15 14 19 19 N 1.31522 * 119.99872 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 120.00389 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46681 * 59.99516 * 20 18 16 22 22 H 1.48493 * 109.47071 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46814 * 299.99934 * 20 18 16 24 24 H 1.09004 * 109.47373 * 269.97438 * 1 2 3 25 25 H 1.09001 * 109.47191 * 29.97492 * 1 2 3 26 26 H 1.09001 * 109.47031 * 149.97257 * 1 2 3 27 27 H 1.09001 * 109.47308 * 270.03208 * 5 4 3 28 28 H 1.09003 * 109.46835 * 30.03192 * 5 4 3 29 29 H 1.08991 * 109.47101 * 150.02435 * 5 4 3 30 30 H 1.08999 * 109.46665 * 270.04035 * 7 6 4 31 31 H 1.08995 * 109.46944 * 30.03843 * 7 6 4 32 32 H 1.08995 * 109.46930 * 150.03952 * 7 6 4 33 33 H 1.08997 * 109.47028 * 299.99880 * 12 11 9 34 34 H 1.09001 * 109.47159 * 60.00001 * 12 11 9 35 35 H 1.08997 * 109.47046 * 184.99617 * 13 12 11 36 36 H 1.09002 * 109.47321 * 304.99915 * 13 12 11 37 37 H 1.08994 * 109.47503 * 300.00058 * 15 14 13 38 38 H 1.09007 * 109.47152 * 60.00352 * 15 14 13 39 39 H 0.96995 * 119.99918 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2734 1.0553 0.0000 4 7 3.6111 0.6445 -0.0006 5 6 4.7783 1.5298 -0.0013 6 6 3.6448 -0.6973 -0.0015 7 6 4.8815 -1.5587 -0.0029 8 6 2.3377 -1.1436 -0.0009 9 6 1.8928 -2.5476 -0.0070 10 8 1.7115 -3.1321 1.0429 11 8 1.6868 -3.1841 -1.1767 12 6 1.2495 -4.5670 -1.1066 13 6 1.0692 -5.1172 -2.5228 14 8 2.3353 -5.1541 -3.1843 15 6 2.2783 -5.6556 -4.5212 16 6 3.6616 -5.6506 -5.1191 17 1 4.5004 -5.2992 -4.5366 18 6 3.8562 -6.0938 -6.4101 19 7 2.8347 -6.5213 -7.1197 20 14 5.5711 -6.0883 -7.1510 21 1 6.4647 -6.9508 -6.3370 22 1 5.5117 -6.6093 -8.5403 23 1 6.1000 -4.7007 -7.1644 24 1 -0.3634 -0.0005 1.0277 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3633 -0.8898 -0.5143 27 1 5.0670 1.7497 -1.0292 28 1 4.5303 2.4583 0.5130 29 1 5.6060 1.0403 0.5118 30 1 5.1792 -1.7650 -1.0310 31 1 5.6884 -1.0367 0.5113 32 1 4.6710 -2.4972 0.5098 33 1 1.9979 -5.1584 -0.5792 34 1 0.3009 -4.6215 -0.5725 35 1 0.6567 -6.1248 -2.4714 36 1 0.3875 -4.4734 -3.0787 37 1 1.8910 -6.6744 -4.5109 38 1 1.6215 -5.0233 -5.1188 39 1 2.9716 -6.8327 -8.0280 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815177001.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:56 Heat of formation + Delta-G solvation = -89.248087 kcal Electronic energy + Delta-G solvation = -21812.110964 eV Core-core repulsion = 18334.740573 eV Total energy + Delta-G solvation = -3477.370392 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.62551 -41.09669 -38.70982 -37.33226 -35.37661 -34.93438 -33.29207 -31.64256 -30.57227 -29.18427 -28.59370 -26.79802 -24.66359 -24.31439 -23.05617 -21.14887 -20.65715 -18.93727 -18.68905 -18.01420 -17.82375 -17.00554 -16.87551 -16.64682 -16.28510 -16.20512 -15.24905 -15.02665 -14.55052 -14.43680 -14.31886 -14.11462 -13.99367 -13.69033 -13.47243 -13.45664 -13.18183 -12.93529 -12.93338 -12.90364 -12.69084 -12.45726 -12.11442 -11.95106 -11.72590 -11.53824 -11.28520 -10.88145 -10.26531 -10.26221 -9.71757 -8.31237 -6.43608 0.52789 0.98130 1.13137 1.34527 1.40881 1.45627 1.54022 1.93460 2.35180 3.02769 3.07606 3.35190 3.42872 3.82813 3.89850 3.94419 4.12074 4.15068 4.29607 4.34717 4.43660 4.52184 4.54685 4.59677 4.66505 4.67904 4.70135 4.81355 4.86387 4.92296 4.95933 5.18133 5.30225 5.41562 5.54874 5.82943 5.95902 6.46142 6.50472 6.66418 6.80140 7.27923 8.80878 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.016652 B = 0.003870 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.033564 B = 7232.937464 C = 8186.262447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.111 3.889 3 N -0.318 5.318 4 N -0.357 5.357 5 C 0.084 3.916 6 C 0.144 3.856 7 C -0.101 4.101 8 C -0.312 4.312 9 C 0.559 3.441 10 O -0.527 6.527 11 O -0.351 6.351 12 C 0.075 3.925 13 C 0.054 3.946 14 O -0.408 6.408 15 C 0.208 3.792 16 C -0.550 4.550 17 H 0.062 0.938 18 C 0.008 3.992 19 N -0.930 5.930 20 Si 0.982 3.018 21 H -0.264 1.264 22 H -0.275 1.275 23 H -0.266 1.266 24 H 0.096 0.904 25 H 0.094 0.906 26 H 0.076 0.924 27 H 0.093 0.907 28 H 0.104 0.896 29 H 0.120 0.880 30 H 0.096 0.904 31 H 0.117 0.883 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.111 0.889 35 H 0.085 0.915 36 H 0.054 0.946 37 H -0.007 1.007 38 H -0.013 1.013 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.506 14.271 15.442 21.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.055 4.055 3 N -0.140 5.140 4 N -0.136 5.136 5 C -0.054 4.054 6 C 0.011 3.989 7 C -0.159 4.159 8 C -0.325 4.325 9 C 0.403 3.597 10 O -0.417 6.417 11 O -0.267 6.267 12 C 0.001 3.999 13 C -0.023 4.023 14 O -0.329 6.329 15 C 0.133 3.867 16 C -0.588 4.588 17 H 0.080 0.920 18 C -0.191 4.191 19 N -0.569 5.569 20 Si 0.805 3.195 21 H -0.189 1.189 22 H -0.200 1.200 23 H -0.190 1.190 24 H 0.114 0.886 25 H 0.113 0.887 26 H 0.095 0.905 27 H 0.111 0.889 28 H 0.122 0.878 29 H 0.138 0.862 30 H 0.115 0.885 31 H 0.135 0.865 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.129 0.871 35 H 0.103 0.897 36 H 0.072 0.928 37 H 0.011 0.989 38 H 0.005 0.995 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.725 15.456 15.646 22.060 hybrid contribution 0.079 -1.282 -0.668 1.448 sum 1.804 14.174 14.978 20.700 Atomic orbital electron populations 1.20390 0.84300 1.04501 1.04478 1.22707 0.98218 0.88097 0.96483 1.77038 0.86947 1.22385 1.27593 1.48518 1.06450 1.04165 1.54449 1.22436 0.83060 0.94489 1.05462 1.21747 0.96190 0.85546 0.95414 1.20756 0.91870 0.98108 1.05171 1.19174 0.94102 0.90840 1.28358 1.20282 0.72318 0.86015 0.81117 1.90786 1.48905 1.68260 1.33712 1.86777 1.77685 1.28228 1.34026 1.23283 1.01760 0.78000 0.96823 1.22650 0.87365 1.00432 0.91821 1.87855 1.29643 1.86241 1.29114 1.19869 0.97053 0.91701 0.78087 1.21359 0.94034 1.44206 0.99204 0.92017 1.25946 1.02528 0.93922 0.96681 1.70058 1.32826 1.43120 1.10922 0.85250 0.77844 0.79127 0.77305 1.18882 1.19998 1.19044 0.88574 0.88678 0.90476 0.88888 0.87762 0.86161 0.88509 0.86458 0.90302 0.90610 0.87097 0.89734 0.92756 0.98941 0.99511 0.92014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.65 10.28 71.23 0.73 -0.92 16 2 C 0.11 3.11 7.27 43.53 0.32 3.43 16 3 N -0.32 -8.65 12.50 -46.65 -0.58 -9.23 16 4 N -0.36 -8.05 3.98 -354.27 -1.41 -9.46 16 5 C 0.08 0.93 11.24 127.77 1.44 2.37 16 6 C 0.14 3.65 7.01 42.17 0.30 3.94 16 7 C -0.10 -1.90 9.93 71.24 0.71 -1.19 16 8 C -0.31 -9.55 6.00 -20.16 -0.12 -9.67 16 9 C 0.56 18.81 7.12 70.20 0.50 19.31 16 10 O -0.53 -18.99 16.90 19.75 0.33 -18.66 16 11 O -0.35 -12.63 10.20 -53.97 -0.55 -13.18 16 12 C 0.07 2.39 5.85 71.98 0.42 2.81 16 13 C 0.05 1.99 6.33 71.98 0.46 2.45 16 14 O -0.41 -20.22 10.30 -145.56 -1.50 -21.72 16 15 C 0.21 11.69 5.69 71.24 0.41 12.10 16 16 C -0.55 -32.83 9.43 25.60 0.24 -32.59 16 17 H 0.06 3.63 7.81 -2.91 -0.02 3.61 16 18 C 0.01 0.45 5.46 84.65 0.46 0.91 16 19 N -0.93 -55.67 13.29 21.45 0.28 -55.39 16 20 Si 0.98 43.94 29.54 68.60 2.03 45.96 16 21 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 22 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 23 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 24 H 0.10 1.72 8.14 -2.38 -0.02 1.71 16 25 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.08 1.64 8.00 -2.39 -0.02 1.62 16 27 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.12 0.60 7.02 -2.39 -0.02 0.58 16 30 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.12 1.22 7.05 -2.39 -0.02 1.21 16 32 H 0.08 1.67 7.96 -2.39 -0.02 1.65 16 33 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 35 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 36 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 37 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 38 H -0.01 -0.76 8.14 -2.38 -0.02 -0.78 16 39 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -78.00 345.34 5.50 -72.50 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: 1.04 Total: 6.23 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: 5.85 Total: 2.95 kcal Atomic # 7 Polarization: -72.37 SS G_CDS: -1.71 Total: -74.08 kcal Atomic # 8 Polarization: -51.85 SS G_CDS: -1.72 Total: -53.56 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Total: -78.00 5.50 -72.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815177001.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.746 kcal (2) G-P(sol) polarization free energy of solvation -77.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds