Wall clock time and date at job start Tue Mar 31 2020 06:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47383 * 2 1 4 4 C 1.50694 * 109.47329 * 180.02562 * 3 2 1 5 5 C 1.35352 * 126.37745 * 275.34417 * 4 3 2 6 6 C 1.41548 * 105.50123 * 180.10348 * 5 4 3 7 7 C 1.47583 * 126.52232 * 179.83965 * 6 5 4 8 8 O 1.21485 * 120.00085 * 359.71475 * 7 6 5 9 9 O 1.34729 * 119.99683 * 179.71451 * 7 6 5 10 10 C 1.45206 * 116.99812 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.46777 * 179.97438 * 10 9 7 12 12 O 1.42904 * 109.47221 * 65.00539 * 11 10 9 13 13 C 1.42898 * 113.99912 * 179.97438 * 12 11 10 14 14 C 1.50704 * 109.46866 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99934 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99914 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99894 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00076 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.46877 * 60.00141 * 18 16 14 20 20 H 1.48495 * 109.47294 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47096 * 300.00401 * 18 16 14 22 22 N 1.31855 * 106.95087 * 359.58013 * 6 5 4 23 23 N 1.28469 * 110.06485 * 0.26329 * 22 6 5 24 24 H 0.96998 * 124.87864 * 180.02562 * 23 22 6 25 25 H 1.09002 * 109.47437 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47208 * 299.99717 * 1 2 3 27 27 H 1.08997 * 109.47592 * 60.00114 * 1 2 3 28 28 H 1.09003 * 109.46940 * 239.99563 * 2 1 3 29 29 H 1.09006 * 109.47106 * 120.00205 * 2 1 3 30 30 H 1.08998 * 109.47019 * 60.00002 * 3 2 1 31 31 H 1.09002 * 109.46717 * 299.99980 * 3 2 1 32 32 H 1.08003 * 127.25096 * 359.94033 * 5 4 3 33 33 H 1.09000 * 109.47070 * 300.00016 * 10 9 7 34 34 H 1.09001 * 109.46626 * 60.00033 * 10 9 7 35 35 H 1.09000 * 109.46738 * 185.00050 * 11 10 9 36 36 H 1.08994 * 109.47465 * 305.00137 * 11 10 9 37 37 H 1.09001 * 109.47167 * 299.99421 * 13 12 11 38 38 H 1.08999 * 109.47239 * 59.99584 * 13 12 11 39 39 H 0.96999 * 120.00107 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.3502 1.3408 1.0840 6 6 5.6725 1.3903 0.5815 7 6 6.9162 1.3204 1.3731 8 8 6.8615 1.2141 2.5820 9 8 8.1120 1.3744 0.7549 10 6 9.2930 1.2995 1.5963 11 6 10.5470 1.3754 0.7230 12 8 10.6122 2.6565 0.0933 13 6 11.7528 2.8326 -0.7493 14 6 11.7194 4.2107 -1.3583 15 1 10.9080 4.8845 -1.1255 16 6 12.7247 4.6114 -2.2127 17 7 13.7124 3.7908 -2.4965 18 14 12.6829 6.3193 -2.9681 19 1 12.7022 7.3387 -1.8884 20 1 13.8689 6.5029 -3.8427 21 1 11.4448 6.4743 -3.7732 22 7 5.5817 1.5051 -0.7289 23 7 4.3475 1.5369 -1.0841 24 1 4.0356 1.6168 -1.9991 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 4.0462 1.2450 2.1160 33 1 9.2900 2.1307 2.3015 34 1 9.2891 0.3576 2.1449 35 1 11.4312 1.2302 1.3437 36 1 10.5065 0.5974 -0.0393 37 1 12.6619 2.7179 -0.1589 38 1 11.7377 2.0849 -1.5422 39 1 14.4198 4.0728 -3.0973 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815185287.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:00 Heat of formation + Delta-G solvation = -76.316478 kcal Electronic energy + Delta-G solvation = -20982.211315 eV Core-core repulsion = 17505.401680 eV Total energy + Delta-G solvation = -3476.809635 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.92158 -39.93637 -36.96674 -35.90135 -35.77742 -32.73347 -32.20156 -31.29949 -29.98851 -26.99915 -26.82283 -24.92118 -22.44097 -22.34898 -21.90668 -21.27308 -20.29839 -18.02634 -17.26995 -16.56477 -16.51920 -16.09561 -15.76388 -15.53365 -15.09313 -14.54304 -14.30604 -14.23346 -13.96977 -13.64406 -13.43458 -12.82467 -12.68322 -12.53643 -12.00014 -11.90308 -11.76629 -11.36602 -11.26021 -10.93828 -10.89344 -10.84202 -10.73498 -10.50729 -10.29606 -10.00889 -9.64584 -9.21345 -9.08999 -8.81717 -8.15578 -6.07627 -4.08820 1.32762 1.80037 2.46575 2.95631 3.19054 3.35078 3.37033 3.41590 4.17968 4.28711 4.36650 4.46744 4.56135 4.79393 4.85859 4.94592 5.19052 5.22309 5.28706 5.29706 5.31113 5.32790 5.49578 5.54098 5.58297 5.75212 5.81223 5.93377 5.97642 6.08896 6.18686 6.59716 6.72736 7.11124 7.45630 7.58744 7.82647 7.97624 8.17769 8.58717 9.03749 9.55453 11.03952 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.021355 B = 0.002873 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.862102 B = 9742.451783 C =10702.999993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.050 4.050 4 C 0.013 3.987 5 C -0.171 4.171 6 C 0.003 3.997 7 C 0.553 3.447 8 O -0.508 6.508 9 O -0.325 6.325 10 C 0.074 3.926 11 C 0.062 3.938 12 O -0.390 6.390 13 C 0.194 3.806 14 C -0.513 4.513 15 H 0.066 0.934 16 C 0.055 3.945 17 N -0.899 5.899 18 Si 0.909 3.091 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.275 1.275 22 N -0.219 5.219 23 N -0.375 5.375 24 H 0.447 0.553 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.165 0.835 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.050 0.950 37 H 0.006 0.994 38 H 0.007 0.993 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.952 -8.644 5.039 26.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.089 4.089 4 C -0.112 4.112 5 C -0.199 4.199 6 C -0.155 4.155 7 C 0.396 3.604 8 O -0.395 6.395 9 O -0.239 6.239 10 C 0.000 4.000 11 C -0.016 4.016 12 O -0.310 6.310 13 C 0.120 3.880 14 C -0.552 4.552 15 H 0.084 0.916 16 C -0.146 4.146 17 N -0.539 5.539 18 Si 0.736 3.264 19 H -0.200 1.200 20 H -0.212 1.212 21 H -0.200 1.200 22 N -0.056 5.056 23 N -0.091 5.091 24 H 0.292 0.708 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.111 0.889 31 H 0.096 0.904 32 H 0.183 0.817 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.024 0.976 38 H 0.025 0.975 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -24.178 -8.458 4.423 25.994 hybrid contribution -0.155 0.605 -0.200 0.656 sum -24.333 -7.853 4.222 25.915 Atomic orbital electron populations 1.21781 0.95179 1.02067 1.02045 1.21557 0.96044 0.95440 1.02967 1.20235 0.86045 0.98372 1.04260 1.21447 0.95169 1.07389 0.87207 1.21458 0.89698 1.08678 1.00019 1.20817 0.92599 1.12146 0.89988 1.19565 0.83023 0.72692 0.85162 1.90829 1.87875 1.46557 1.14256 1.86745 1.13928 1.82320 1.40934 1.23284 0.81419 1.02397 0.92890 1.22317 0.93700 0.89510 0.96032 1.87928 1.48954 1.29957 1.64138 1.20226 0.82366 0.97307 0.88069 1.21020 1.08625 0.98742 1.26767 0.91583 1.24948 0.95057 0.98216 0.96331 1.69953 1.11689 1.35952 1.36276 0.86383 0.77435 0.83533 0.79043 1.20022 1.21171 1.20026 1.73895 1.00709 1.16112 1.14904 1.43492 1.02987 1.52497 1.10124 0.70829 0.92413 0.92377 0.92620 0.91879 0.91103 0.88872 0.90409 0.81747 0.90290 0.90240 0.91861 0.93146 0.97610 0.97494 0.92630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.59 9.91 37.15 0.37 -0.22 16 2 C -0.12 -0.59 5.92 -26.73 -0.16 -0.75 16 3 C -0.05 -0.25 5.77 -27.89 -0.16 -0.41 16 4 C 0.01 0.11 6.48 -82.21 -0.53 -0.42 16 5 C -0.17 -1.97 10.73 -39.35 -0.42 -2.39 16 6 C 0.00 0.05 7.17 -82.78 -0.59 -0.55 16 7 C 0.55 9.60 7.97 34.54 0.28 9.87 16 8 O -0.51 -9.13 16.72 -19.25 -0.32 -9.45 16 9 O -0.32 -6.16 10.20 -43.35 -0.44 -6.60 16 10 C 0.07 1.26 5.85 37.16 0.22 1.47 16 11 C 0.06 1.20 6.33 37.16 0.24 1.43 16 12 O -0.39 -9.90 10.30 -38.79 -0.40 -10.30 16 13 C 0.19 5.49 5.69 36.01 0.20 5.70 16 14 C -0.51 -15.58 9.43 -34.44 -0.32 -15.90 16 15 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.90 -27.33 13.29 55.43 0.74 -26.60 16 18 Si 0.91 22.33 29.54 -169.99 -5.02 17.31 16 19 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 22 N -0.22 -3.20 12.24 33.41 0.41 -2.79 16 23 N -0.38 -3.68 6.83 33.50 0.23 -3.45 16 24 H 0.45 2.70 8.96 -190.44 -1.71 0.99 16 25 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 27 H 0.05 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.16 1.62 8.06 -52.48 -0.42 1.20 16 33 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 38 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 39 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 346.11 15.07 5.22 5.22 Total: -1.00 -36.08 346.11 -7.75 -43.84 By element: Atomic # 1 Polarization: 0.62 SS G_CDS: -7.17 Total: -6.55 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -0.99 Total: -0.63 kcal Atomic # 7 Polarization: -34.21 SS G_CDS: 1.37 Total: -32.84 kcal Atomic # 8 Polarization: -25.19 SS G_CDS: -1.16 Total: -26.35 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -36.08 -7.75 -43.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815185287.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.479 kcal (2) G-P(sol) polarization free energy of solvation -36.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds