Wall clock time and date at job start Tue Mar 31 2020 06:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47212 * 2 1 4 4 C 1.38116 * 126.29828 * 269.99931 * 3 2 1 5 5 C 1.47293 * 126.42602 * 0.02562 * 4 3 2 6 6 O 1.21524 * 119.99993 * 359.97438 * 5 4 3 7 7 O 1.34753 * 119.99902 * 179.97438 * 5 4 3 8 8 C 1.45200 * 116.99658 * 179.97438 * 7 5 4 9 9 C 1.53005 * 109.46841 * 180.02562 * 8 7 5 10 10 O 1.42901 * 109.47165 * 65.00533 * 9 8 7 11 11 C 1.42898 * 113.99955 * 179.97438 * 10 9 8 12 12 C 1.50702 * 109.47418 * 179.97438 * 11 10 9 13 13 H 1.08002 * 119.99618 * 0.02562 * 12 11 10 14 14 C 1.37870 * 120.00538 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99883 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00258 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47193 * 90.00143 * 16 14 12 18 18 H 1.48500 * 109.47159 * 210.00408 * 16 14 12 19 19 H 1.48501 * 109.47269 * 330.00217 * 16 14 12 20 20 C 1.41346 * 107.15097 * 179.97438 * 4 3 2 21 21 N 1.30428 * 108.00648 * 0.02562 * 20 4 3 22 22 N 1.34224 * 126.29414 * 89.68851 * 3 2 1 23 23 C 1.46500 * 125.74350 * 0.02562 * 22 3 2 24 24 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47153 * 299.99998 * 1 2 3 26 26 H 1.08998 * 109.47533 * 59.99628 * 1 2 3 27 27 H 1.09002 * 109.47153 * 240.00002 * 2 1 3 28 28 H 1.09001 * 109.46832 * 120.00193 * 2 1 3 29 29 H 1.09002 * 109.47526 * 300.00125 * 8 7 5 30 30 H 1.08994 * 109.47226 * 60.00758 * 8 7 5 31 31 H 1.09002 * 109.47130 * 185.00244 * 9 8 7 32 32 H 1.09000 * 109.47166 * 305.00420 * 9 8 7 33 33 H 1.08999 * 109.47287 * 299.99680 * 11 10 9 34 34 H 1.09008 * 109.47451 * 59.99784 * 11 10 9 35 35 H 0.97000 * 120.00182 * 179.97438 * 15 14 12 36 36 H 1.07996 * 125.99672 * 179.97438 * 20 4 3 37 37 H 1.09000 * 109.47147 * 89.99714 * 23 22 3 38 38 H 1.08999 * 109.47180 * 210.00148 * 23 22 3 39 39 H 1.09004 * 109.47317 * 330.00296 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3049 2.1917 -1.1131 5 6 2.1586 1.7795 -2.5196 6 8 1.7634 0.6619 -2.7873 7 8 2.4630 2.6416 -3.5095 8 6 2.2953 2.1671 -4.8715 9 6 2.6875 3.2762 -5.8498 10 8 4.0822 3.5576 -5.7166 11 6 4.5541 4.5845 -6.5912 12 6 6.0289 4.7976 -6.3661 13 1 6.5535 4.2076 -5.6291 14 6 6.7087 5.7451 -7.1016 15 7 6.0701 6.4633 -7.9994 16 14 8.5369 6.0087 -6.8231 17 1 9.3088 5.1156 -7.7241 18 1 8.8829 7.4234 -7.1131 19 1 8.8725 5.6967 -5.4105 20 6 2.7494 3.4508 -0.6495 21 7 2.7410 3.4262 0.6545 22 7 2.2916 2.1719 1.0818 23 6 2.1344 1.7482 2.4754 24 1 -0.3635 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.9320 1.2975 -5.0344 30 1 1.2537 1.8904 -5.0343 31 1 2.4780 2.9523 -6.8693 32 1 2.1127 4.1756 -5.6290 33 1 4.3834 4.2873 -7.6259 34 1 4.0180 5.5112 -6.3862 35 1 6.5483 7.1301 -8.5166 36 1 3.0451 4.2862 -1.2667 37 1 3.0644 1.3009 2.8263 38 1 1.8915 2.6130 3.0928 39 1 1.3303 1.0155 2.5439 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815191972.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:59 Heat of formation + Delta-G solvation = -67.260041 kcal Electronic energy + Delta-G solvation = -21625.586808 eV Core-core repulsion = 18149.169890 eV Total energy + Delta-G solvation = -3476.416918 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.68772 -39.71830 -36.94347 -35.88106 -34.54717 -33.26580 -32.72884 -30.28567 -29.41510 -27.52615 -26.81006 -24.37963 -23.09841 -22.34687 -21.88506 -20.89583 -19.60012 -17.83688 -16.66947 -16.43369 -16.33929 -15.91368 -15.75185 -15.14440 -14.70571 -14.56241 -14.45631 -14.25409 -13.63073 -13.53301 -13.20555 -12.98272 -12.71795 -12.60144 -12.45451 -12.04622 -11.81538 -11.52055 -11.37841 -10.92335 -10.85531 -10.80704 -10.67837 -10.26701 -10.19483 -9.99882 -9.62406 -9.09177 -8.85417 -8.83399 -8.17295 -6.08939 -4.10321 1.22493 2.02586 2.05838 3.00984 3.26734 3.32770 3.37627 3.43633 4.15110 4.23678 4.36030 4.57563 4.73365 4.78766 4.88167 4.94379 4.98548 5.04819 5.15976 5.27731 5.32603 5.35746 5.44219 5.54798 5.59468 5.82478 5.89606 5.93895 6.02070 6.17979 6.32771 6.55680 6.74843 7.09499 7.37633 7.43736 7.81676 8.06356 8.16349 8.56934 9.02736 9.54441 11.02672 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.022046 B = 0.003323 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.747729 B = 8424.947601 C = 9310.738090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.072 4.072 3 C 0.164 3.836 4 C -0.279 4.279 5 C 0.544 3.456 6 O -0.527 6.527 7 O -0.336 6.336 8 C 0.078 3.922 9 C 0.062 3.938 10 O -0.390 6.390 11 C 0.194 3.806 12 C -0.514 4.514 13 H 0.067 0.933 14 C 0.056 3.944 15 N -0.899 5.899 16 Si 0.908 3.092 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.271 1.271 20 C 0.111 3.889 21 N -0.302 5.302 22 N -0.363 5.363 23 C 0.096 3.904 24 H 0.068 0.932 25 H 0.050 0.950 26 H 0.065 0.935 27 H 0.112 0.888 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.006 0.994 34 H 0.007 0.993 35 H 0.264 0.736 36 H 0.202 0.798 37 H 0.080 0.920 38 H 0.095 0.905 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.588 -11.804 18.606 25.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.110 4.110 3 C 0.031 3.969 4 C -0.292 4.292 5 C 0.390 3.610 6 O -0.419 6.419 7 O -0.252 6.252 8 C 0.004 3.996 9 C -0.016 4.016 10 O -0.310 6.310 11 C 0.120 3.880 12 C -0.552 4.552 13 H 0.085 0.915 14 C -0.145 4.145 15 N -0.539 5.539 16 Si 0.735 3.265 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.196 1.196 20 C -0.077 4.077 21 N -0.120 5.120 22 N -0.141 5.141 23 C -0.045 4.045 24 H 0.087 0.913 25 H 0.069 0.931 26 H 0.084 0.916 27 H 0.130 0.870 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.023 0.977 34 H 0.025 0.975 35 H 0.073 0.927 36 H 0.219 0.781 37 H 0.098 0.902 38 H 0.113 0.887 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -12.314 -11.410 19.730 25.905 hybrid contribution 0.645 -0.035 -0.997 1.188 sum -11.669 -11.445 18.732 24.860 Atomic orbital electron populations 1.21652 0.93291 1.02615 1.02326 1.20497 0.97160 0.88287 1.05103 1.21480 0.94486 0.94615 0.86289 1.19095 1.22485 0.97104 0.90539 1.19887 0.73366 0.82489 0.85257 1.90756 1.45055 1.21272 1.84806 1.86633 1.78632 1.43729 1.16196 1.23177 1.01009 0.98182 0.77248 1.22327 0.86885 0.96540 0.95865 1.87923 1.19722 1.59439 1.63927 1.20229 0.94974 0.84711 0.88072 1.21061 0.92829 1.19937 1.21383 0.91492 1.24943 0.99192 0.95434 0.94931 1.69963 1.36469 1.23573 1.23865 0.86333 0.84092 0.77272 0.78791 1.20489 1.21086 1.19578 1.24331 0.94529 0.97433 0.91380 1.77285 1.22351 0.98915 1.13487 1.48369 1.49491 1.10004 1.06255 1.21977 1.03275 1.01970 0.77289 0.91305 0.93104 0.91617 0.86964 0.90469 0.90542 0.90492 0.92013 0.93199 0.97659 0.97484 0.92663 0.78095 0.90164 0.88661 0.89177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.89 37.16 0.37 -0.71 16 2 C -0.07 -0.63 5.39 -27.88 -0.15 -0.78 16 3 C 0.16 1.92 6.26 -81.59 -0.51 1.41 16 4 C -0.28 -4.01 6.13 -105.08 -0.64 -4.65 16 5 C 0.54 8.77 7.95 34.41 0.27 9.05 16 6 O -0.53 -8.75 14.63 -19.28 -0.28 -9.03 16 7 O -0.34 -5.88 10.04 -43.42 -0.44 -6.32 16 8 C 0.08 1.26 5.85 37.16 0.22 1.48 16 9 C 0.06 1.14 6.33 37.16 0.24 1.37 16 10 O -0.39 -9.58 10.30 -38.79 -0.40 -9.98 16 11 C 0.19 5.37 5.69 36.01 0.20 5.57 16 12 C -0.51 -15.32 9.43 -34.44 -0.32 -15.65 16 13 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 15 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 16 Si 0.91 22.07 29.54 -169.99 -5.02 17.05 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 19 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 20 C 0.11 1.55 11.87 -16.97 -0.20 1.35 16 21 N -0.30 -4.09 12.50 30.87 0.39 -3.70 16 22 N -0.36 -3.94 3.98 -63.33 -0.25 -4.19 16 23 C 0.10 0.55 11.06 59.85 0.66 1.21 16 24 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.11 1.20 6.50 -51.93 -0.34 0.86 16 28 H 0.08 0.47 7.71 -51.93 -0.40 0.07 16 29 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 34 H 0.01 0.21 8.14 -51.92 -0.42 -0.21 16 35 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.20 2.58 8.06 -52.49 -0.42 2.16 16 37 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.09 0.30 7.63 -51.93 -0.40 -0.10 16 LS Contribution 342.47 15.07 5.16 5.16 Total: -1.00 -35.21 342.47 -5.83 -41.04 By element: Atomic # 1 Polarization: 0.85 SS G_CDS: -5.75 Total: -4.90 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: 0.03 Total: 1.18 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: 0.87 Total: -34.21 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -1.12 Total: -25.33 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -35.21 -5.83 -41.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815191972.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.224 kcal (2) G-P(sol) polarization free energy of solvation -35.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds