Wall clock time and date at job start Tue Mar 31 2020 06:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39872 * 126.03842 * 2 1 4 4 N 1.30838 * 108.20312 * 180.02562 * 3 2 1 5 5 N 1.40088 * 108.20068 * 359.77854 * 4 3 2 6 6 C 1.46503 * 126.03204 * 180.22797 * 5 4 3 7 7 C 1.53000 * 109.47420 * 305.15988 * 6 5 4 8 8 C 1.50706 * 109.46865 * 180.02562 * 7 6 5 9 9 O 1.20822 * 120.00148 * 359.97438 * 8 7 6 10 10 O 1.34228 * 119.99372 * 179.97438 * 8 7 6 11 11 C 1.45210 * 116.99321 * 179.97438 * 10 8 7 12 12 C 1.53006 * 109.46519 * 179.97438 * 11 10 8 13 13 O 1.42894 * 109.47023 * 65.00287 * 12 11 10 14 14 C 1.42903 * 113.99735 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.47263 * 179.97438 * 14 13 12 16 16 H 1.07995 * 119.99722 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00081 * 180.02562 * 15 14 13 18 18 N 1.31519 * 120.00308 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99973 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47106 * 60.00337 * 19 17 15 21 21 H 1.48503 * 109.47235 * 180.02562 * 19 17 15 22 22 H 1.48493 * 109.47402 * 299.99916 * 19 17 15 23 23 C 1.34940 * 107.93023 * 0.36844 * 5 4 3 24 24 H 1.08999 * 109.46941 * 269.97134 * 1 2 3 25 25 H 1.08991 * 109.47234 * 29.97396 * 1 2 3 26 26 H 1.09002 * 109.46951 * 149.98010 * 1 2 3 27 27 H 1.08001 * 125.89521 * 359.97438 * 3 2 1 28 28 H 1.09005 * 109.46694 * 65.16147 * 6 5 4 29 29 H 1.08999 * 109.47197 * 185.15258 * 6 5 4 30 30 H 1.08996 * 109.47042 * 299.99805 * 7 6 5 31 31 H 1.09000 * 109.47085 * 59.99765 * 7 6 5 32 32 H 1.08991 * 109.46945 * 299.99736 * 11 10 8 33 33 H 1.08997 * 109.47072 * 60.00362 * 11 10 8 34 34 H 1.09000 * 109.46494 * 185.00191 * 12 11 10 35 35 H 1.08996 * 109.46945 * 304.99700 * 12 11 10 36 36 H 1.09004 * 109.47489 * 300.00110 * 14 13 12 37 37 H 1.09005 * 109.46909 * 59.99946 * 14 13 12 38 38 H 0.96992 * 120.00096 * 180.02562 * 18 17 15 39 39 H 1.08002 * 126.13053 * 179.90865 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1310 0.0000 4 7 3.5754 0.7303 -0.0006 5 7 3.5844 -0.6705 0.0042 6 6 4.7746 -1.5247 0.0100 7 6 5.6762 -1.1513 -1.1684 8 6 6.9002 -2.0305 -1.1626 9 8 7.0375 -2.8693 -0.3040 10 8 7.8378 -1.8816 -2.1116 11 6 8.9901 -2.7625 -2.0436 12 6 9.9421 -2.4468 -3.1991 13 8 10.4653 -1.1269 -3.0382 14 6 11.3711 -0.7309 -4.0701 15 6 11.8575 0.6699 -3.8013 16 1 11.5100 1.2041 -2.9295 17 6 12.7461 1.2693 -4.6685 18 7 13.1688 0.6189 -5.7305 19 14 13.3484 3.0060 -4.3357 20 1 14.0446 3.0457 -3.0246 21 1 14.2888 3.4179 -5.4086 22 1 12.1904 3.9351 -4.3097 23 6 2.3032 -1.0942 -0.0006 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3633 0.8901 -0.5134 26 1 -0.3633 -0.8898 -0.5142 27 1 1.9950 2.1578 -0.0004 28 1 5.3192 -1.3826 0.9435 29 1 4.4732 -2.5684 -0.0795 30 1 5.1316 -1.2934 -2.1018 31 1 5.9775 -0.1076 -1.0788 32 1 9.5065 -2.6125 -1.0955 33 1 8.6602 -3.7987 -2.1178 34 1 10.7621 -3.1650 -3.2006 35 1 9.4013 -2.5108 -4.1432 36 1 12.2207 -1.4135 -4.0895 37 1 10.8602 -0.7594 -5.0326 38 1 13.7942 1.0405 -6.3403 39 1 1.9724 -2.1223 -0.0001 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815197178.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:28 Heat of formation + Delta-G solvation = -65.252571 kcal Electronic energy + Delta-G solvation = -20776.989907 eV Core-core repulsion = 17300.660039 eV Total energy + Delta-G solvation = -3476.329868 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.48007 -40.45295 -37.25306 -36.19607 -34.83483 -32.78973 -32.04875 -31.04572 -29.97051 -27.13874 -26.74111 -24.82860 -22.59090 -22.23142 -21.29121 -20.80661 -20.21376 -18.06499 -16.96230 -16.87601 -16.53096 -16.11796 -15.61953 -15.31882 -14.70403 -14.66638 -14.40298 -14.11588 -13.66519 -13.56215 -13.27661 -13.20521 -12.79899 -12.60505 -12.40996 -12.19703 -11.94802 -11.71799 -11.46639 -10.98311 -10.87575 -10.78946 -10.75023 -10.54849 -10.44534 -10.07020 -9.69468 -9.15978 -8.89584 -8.59322 -8.23360 -6.12955 -4.14840 1.61682 2.07241 2.12377 2.55412 2.79886 3.32155 3.34527 3.38741 4.14783 4.30909 4.36391 4.51314 4.65692 4.69061 4.79160 4.95741 5.00148 5.15010 5.16315 5.23552 5.29437 5.40428 5.42893 5.46395 5.58561 5.74341 5.81314 5.87668 5.88050 6.03354 6.40944 6.49151 6.73153 7.02647 7.37488 7.45822 7.68506 7.76723 8.10747 8.49936 8.97226 9.49960 10.98512 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.019262 B = 0.002661 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.252889 B =10517.898850 C =11645.919733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.245 4.245 3 C 0.049 3.951 4 N -0.290 5.290 5 N -0.373 5.373 6 C 0.149 3.851 7 C -0.129 4.129 8 C 0.469 3.531 9 O -0.520 6.520 10 O -0.337 6.337 11 C 0.074 3.926 12 C 0.061 3.939 13 O -0.391 6.391 14 C 0.195 3.805 15 C -0.516 4.516 16 H 0.066 0.934 17 C 0.056 3.944 18 N -0.899 5.899 19 Si 0.909 3.091 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.055 3.945 24 H 0.059 0.941 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.183 0.817 28 H 0.097 0.903 29 H 0.106 0.894 30 H 0.111 0.889 31 H 0.123 0.877 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.050 0.950 36 H 0.006 0.994 37 H 0.007 0.993 38 H 0.265 0.735 39 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.231 -6.407 9.929 26.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.257 4.257 3 C -0.137 4.137 4 N -0.111 5.111 5 N -0.155 5.155 6 C 0.028 3.972 7 C -0.167 4.167 8 C 0.312 3.688 9 O -0.410 6.410 10 O -0.252 6.252 11 C 0.001 3.999 12 C -0.017 4.017 13 O -0.311 6.311 14 C 0.121 3.879 15 C -0.554 4.554 16 H 0.084 0.916 17 C -0.145 4.145 18 N -0.538 5.538 19 Si 0.736 3.264 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.199 1.199 23 C -0.091 4.091 24 H 0.078 0.922 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.199 0.801 28 H 0.115 0.885 29 H 0.124 0.876 30 H 0.129 0.871 31 H 0.141 0.859 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.024 0.976 37 H 0.025 0.975 38 H 0.074 0.926 39 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -21.701 -6.264 10.150 24.762 hybrid contribution -0.211 0.273 -0.190 0.394 sum -21.912 -5.991 9.959 24.803 Atomic orbital electron populations 1.20040 0.89306 1.02147 1.01459 1.20171 0.97149 0.91898 1.16468 1.23851 0.89917 0.99905 1.00038 1.77407 1.21303 0.88645 1.23720 1.48581 1.05279 1.04834 1.56852 1.21438 0.83495 0.92765 0.99518 1.21553 0.92143 1.01988 1.01028 1.23235 0.84313 0.82187 0.79027 1.90661 1.78225 1.34970 1.37144 1.86606 1.30483 1.58568 1.49586 1.23266 0.83485 0.92008 1.01146 1.22327 0.94678 0.88658 0.96020 1.87920 1.63956 1.27781 1.51431 1.20242 0.86701 0.95609 0.85397 1.21004 1.25954 0.98569 1.09880 0.91554 1.24951 0.95999 0.98762 0.94787 1.69948 1.32822 1.37862 1.13173 0.86373 0.78612 0.83478 0.77893 1.19994 1.21131 1.19945 1.22365 0.84038 1.00140 1.02538 0.92223 0.91847 0.92219 0.80058 0.88511 0.87583 0.87099 0.85882 0.90325 0.90310 0.91845 0.93170 0.97580 0.97481 0.92558 0.81006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.41 10.37 36.01 0.37 -0.04 16 2 C -0.25 -2.09 6.10 -105.05 -0.64 -2.73 16 3 C 0.05 0.48 11.96 -17.36 -0.21 0.28 16 4 N -0.29 -3.52 12.42 30.63 0.38 -3.13 16 5 N -0.37 -3.82 3.68 -61.36 -0.23 -4.04 16 6 C 0.15 1.37 5.80 -4.04 -0.02 1.34 16 7 C -0.13 -1.35 5.99 -27.88 -0.17 -1.52 16 8 C 0.47 6.37 7.96 36.01 0.29 6.66 16 9 O -0.52 -7.73 15.73 -18.75 -0.29 -8.03 16 10 O -0.34 -5.45 10.19 -42.02 -0.43 -5.88 16 11 C 0.07 1.15 5.85 37.16 0.22 1.37 16 12 C 0.06 1.10 6.33 37.16 0.24 1.33 16 13 O -0.39 -9.49 10.30 -38.80 -0.40 -9.89 16 14 C 0.19 5.34 5.69 36.01 0.20 5.54 16 15 C -0.52 -15.31 9.43 -34.44 -0.32 -15.63 16 16 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -26.89 13.29 55.43 0.74 -26.16 16 19 Si 0.91 21.99 29.54 -169.99 -5.02 16.97 16 20 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 23 C 0.05 0.46 11.36 -17.23 -0.20 0.26 16 24 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.18 1.28 8.06 -52.49 -0.42 0.86 16 28 H 0.10 0.94 8.10 -51.93 -0.42 0.52 16 29 H 0.11 0.76 8.03 -51.93 -0.42 0.34 16 30 H 0.11 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.12 1.42 8.14 -51.93 -0.42 0.99 16 32 H 0.08 1.24 8.13 -51.93 -0.42 0.82 16 33 H 0.08 0.99 8.13 -51.93 -0.42 0.57 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 37 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 39 H 0.17 0.87 8.06 -52.49 -0.42 0.44 16 LS Contribution 346.66 15.07 5.22 5.22 Total: -1.00 -34.84 346.66 -6.25 -41.09 By element: Atomic # 1 Polarization: 1.33 SS G_CDS: -5.88 Total: -4.54 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -0.34 Total: -1.61 kcal Atomic # 7 Polarization: -34.23 SS G_CDS: 0.89 Total: -33.34 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -1.12 Total: -23.80 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.84 -6.25 -41.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815197178.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.162 kcal (2) G-P(sol) polarization free energy of solvation -34.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds