Wall clock time and date at job start Tue Mar 31 2020 06:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50697 * 109.47048 * 2 1 4 4 N 1.30432 * 125.99113 * 270.30139 * 3 2 1 5 5 N 1.39931 * 108.91646 * 180.14959 * 4 3 2 6 6 C 1.46506 * 125.74441 * 179.85189 * 5 4 3 7 7 C 1.34226 * 108.51631 * 359.58353 * 5 4 3 8 8 C 1.38129 * 107.40517 * 0.24304 * 7 5 4 9 9 C 1.47283 * 126.42768 * 179.97438 * 8 7 5 10 10 O 1.21517 * 120.00156 * 180.02562 * 9 8 7 11 11 O 1.34753 * 119.99931 * 0.02884 * 9 8 7 12 12 C 1.45196 * 117.00368 * 179.97438 * 11 9 8 13 13 C 1.52995 * 109.47654 * 179.97438 * 12 11 9 14 14 O 1.42904 * 109.46971 * 64.99984 * 13 12 11 15 15 C 1.42903 * 114.00056 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.47020 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00211 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99670 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00079 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 119.99781 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47578 * 89.99470 * 20 18 16 22 22 H 1.48503 * 109.47157 * 210.00072 * 20 18 16 23 23 H 1.48509 * 109.47167 * 329.99782 * 20 18 16 24 24 H 1.09007 * 109.46926 * 60.00473 * 1 2 3 25 25 H 1.09002 * 109.47380 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47301 * 300.00019 * 1 2 3 27 27 H 1.09000 * 109.47301 * 239.99981 * 2 1 3 28 28 H 1.09003 * 109.46900 * 120.00026 * 2 1 3 29 29 H 1.09001 * 109.47060 * 269.69328 * 6 5 4 30 30 H 1.09004 * 109.47073 * 29.68817 * 6 5 4 31 31 H 1.09000 * 109.47212 * 149.68899 * 6 5 4 32 32 H 1.07997 * 126.29792 * 180.21804 * 7 5 4 33 33 H 1.09005 * 109.47021 * 300.00247 * 12 11 9 34 34 H 1.08998 * 109.47070 * 59.99695 * 12 11 9 35 35 H 1.08994 * 109.47312 * 184.99835 * 13 12 11 36 36 H 1.09003 * 109.46932 * 304.99982 * 13 12 11 37 37 H 1.08997 * 109.46842 * 300.00268 * 15 14 13 38 38 H 1.09000 * 109.46942 * 59.99728 * 15 14 13 39 39 H 0.97002 * 119.99955 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2825 2.1453 -1.0553 5 7 2.7337 3.4046 -0.6445 6 6 3.1223 4.5052 -1.5299 7 6 2.7449 3.4365 0.6973 8 6 2.3091 2.2040 1.1436 9 6 2.1613 1.7844 2.5476 10 8 1.7661 0.6654 2.8090 11 8 2.4642 2.6415 3.5424 12 6 2.2940 2.1604 4.9017 13 6 2.6849 3.2644 5.8862 14 8 1.7778 4.3610 5.7570 15 6 2.0559 5.4522 6.6367 16 6 1.0436 6.5464 6.4154 17 1 0.2655 6.4210 5.6771 18 6 1.1109 7.7078 7.1555 19 7 2.0588 7.8608 8.0542 20 14 -0.1442 9.0639 6.8817 21 1 -1.3065 8.8517 7.7813 22 1 0.4767 10.3801 7.1771 23 1 -0.6007 9.0379 5.4687 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 4.1877 4.4360 -1.7495 30 1 2.5551 4.4421 -2.4586 31 1 2.9132 5.4564 -1.0404 32 1 3.0406 4.2719 1.3146 33 1 1.2520 1.8831 5.0612 34 1 2.9301 1.2898 5.0614 35 1 2.6424 2.8757 6.9036 36 1 3.6979 3.6032 5.6687 37 1 2.0007 5.1091 7.6698 38 1 3.0557 5.8363 6.4344 39 1 2.1060 8.6777 8.5751 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815230322.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:01 Heat of formation + Delta-G solvation = -90.294015 kcal Electronic energy + Delta-G solvation = -21603.650723 eV Core-core repulsion = 18126.234977 eV Total energy + Delta-G solvation = -3477.415746 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.56123 -40.95853 -38.67947 -37.31482 -35.66259 -34.93248 -32.87871 -32.04393 -31.12993 -29.00795 -27.92303 -25.33923 -24.53418 -23.94004 -23.16392 -21.88293 -20.54770 -18.82249 -18.65208 -17.99712 -17.85363 -17.06224 -16.74135 -16.57208 -16.25641 -16.10942 -15.67176 -15.26065 -15.04265 -14.47355 -14.17877 -14.04365 -13.87291 -13.65268 -13.48529 -13.17973 -12.93850 -12.89222 -12.69588 -12.51508 -12.41147 -12.18511 -11.98952 -11.90541 -11.65175 -11.31306 -11.25277 -10.87972 -10.47601 -10.24891 -9.84759 -8.31365 -6.43339 0.29466 0.91985 1.29550 1.41324 1.43636 1.55618 1.82235 2.11870 2.35312 3.02738 3.09873 3.24697 3.64020 3.95001 3.98799 4.04638 4.16368 4.22255 4.37174 4.40553 4.43300 4.47329 4.54094 4.59562 4.66089 4.69162 4.76842 4.88245 5.01549 5.12198 5.19677 5.26818 5.34158 5.53636 5.55793 5.78305 5.96677 6.43720 6.51860 6.80453 6.84756 7.28400 8.80811 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.017351 B = 0.003566 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.319720 B = 7850.453716 C = 8687.166356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.048 4.048 3 C 0.132 3.868 4 N -0.318 5.318 5 N -0.356 5.356 6 C 0.084 3.916 7 C 0.143 3.857 8 C -0.312 4.312 9 C 0.541 3.459 10 O -0.537 6.537 11 O -0.356 6.356 12 C 0.081 3.919 13 C 0.055 3.945 14 O -0.409 6.409 15 C 0.208 3.792 16 C -0.550 4.550 17 H 0.060 0.940 18 C 0.009 3.991 19 N -0.929 5.929 20 Si 0.981 3.019 21 H -0.269 1.269 22 H -0.273 1.273 23 H -0.265 1.265 24 H 0.055 0.945 25 H 0.083 0.917 26 H 0.037 0.963 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.117 0.883 32 H 0.215 0.785 33 H 0.070 0.930 34 H 0.108 0.892 35 H 0.081 0.919 36 H 0.058 0.942 37 H -0.009 1.009 38 H -0.009 1.009 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.249 -10.112 -18.041 20.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.088 4.088 3 C -0.036 4.036 4 N -0.139 5.139 5 N -0.132 5.132 6 C -0.054 4.054 7 C -0.011 4.011 8 C -0.325 4.325 9 C 0.388 3.612 10 O -0.429 6.429 11 O -0.272 6.272 12 C 0.008 3.992 13 C -0.022 4.022 14 O -0.329 6.329 15 C 0.133 3.867 16 C -0.587 4.587 17 H 0.078 0.922 18 C -0.190 4.190 19 N -0.568 5.568 20 Si 0.804 3.196 21 H -0.195 1.195 22 H -0.198 1.198 23 H -0.189 1.189 24 H 0.074 0.926 25 H 0.101 0.899 26 H 0.056 0.944 27 H 0.113 0.887 28 H 0.107 0.893 29 H 0.118 0.882 30 H 0.120 0.880 31 H 0.136 0.864 32 H 0.232 0.768 33 H 0.088 0.912 34 H 0.126 0.874 35 H 0.099 0.901 36 H 0.076 0.924 37 H 0.008 0.992 38 H 0.009 0.991 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.130 -10.115 -19.348 22.055 hybrid contribution -0.131 0.672 1.508 1.656 sum 2.999 -9.443 -17.840 20.406 Atomic orbital electron populations 1.21587 0.93401 1.03085 1.01135 1.20181 0.96972 0.87230 1.04369 1.22730 0.94997 0.97626 0.88213 1.77124 1.22735 0.91606 1.22482 1.48767 1.47402 1.11820 1.05246 1.22484 1.03106 0.85312 0.94518 1.23703 0.93338 0.98627 0.85400 1.19474 1.24560 0.97851 0.90593 1.20240 0.73155 0.82315 0.85475 1.90745 1.45354 1.21742 1.85029 1.86604 1.79024 1.44903 1.16665 1.23159 1.03000 0.96332 0.76751 1.22642 0.93987 0.87694 0.97859 1.87869 1.54055 1.27920 1.63049 1.19865 0.95310 0.83856 0.87651 1.21386 1.14048 1.01234 1.22053 0.92208 1.25910 0.98204 1.00739 0.94117 1.70057 1.34194 1.28478 1.24109 0.85216 0.78177 0.77180 0.79039 1.19469 1.19813 1.18909 0.92566 0.89857 0.94351 0.88702 0.89282 0.88206 0.87989 0.86434 0.76824 0.91198 0.87417 0.90090 0.92374 0.99160 0.99083 0.92005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.84 9.89 71.98 0.71 -2.13 16 2 C -0.05 -1.10 5.97 29.85 0.18 -0.92 16 3 C 0.13 3.51 6.52 43.53 0.28 3.80 16 4 N -0.32 -8.03 12.50 -46.65 -0.58 -8.61 16 5 N -0.36 -7.25 3.98 -367.71 -1.46 -8.71 16 6 C 0.08 0.83 11.44 127.77 1.46 2.29 16 7 C 0.14 3.27 11.33 84.30 0.96 4.23 16 8 C -0.31 -8.89 6.13 -20.16 -0.12 -9.01 16 9 C 0.54 17.61 7.95 70.20 0.56 18.17 16 10 O -0.54 -18.61 14.71 19.78 0.29 -18.32 16 11 O -0.36 -12.07 10.02 -53.98 -0.54 -12.61 16 12 C 0.08 2.56 5.85 71.98 0.42 2.98 16 13 C 0.05 1.97 6.33 71.98 0.46 2.43 16 14 O -0.41 -19.89 10.30 -145.57 -1.50 -21.39 16 15 C 0.21 11.50 5.69 71.24 0.41 11.90 16 16 C -0.55 -32.47 9.43 25.60 0.24 -32.23 16 17 H 0.06 3.52 7.81 -2.91 -0.02 3.50 16 18 C 0.01 0.51 5.46 84.66 0.46 0.97 16 19 N -0.93 -54.93 13.29 21.45 0.28 -54.65 16 20 Si 0.98 43.71 29.54 68.60 2.03 45.74 16 21 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 22 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 23 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 24 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 25 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.09 2.21 6.55 -2.39 -0.02 2.20 16 29 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 31 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.22 3.91 8.06 -2.91 -0.02 3.88 16 33 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 34 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 35 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 36 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 37 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 38 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 39 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 Total: -1.00 -74.64 344.22 5.56 -69.07 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: 1.04 Total: 7.00 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: 6.01 Total: 2.48 kcal Atomic # 7 Polarization: -70.21 SS G_CDS: -1.76 Total: -71.97 kcal Atomic # 8 Polarization: -50.57 SS G_CDS: -1.75 Total: -52.32 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -74.64 5.56 -69.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815230322.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.221 kcal (2) G-P(sol) polarization free energy of solvation -74.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds