Wall clock time and date at job start Tue Mar 31 2020 05:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34231 * 116.99699 * 2 1 4 4 O 1.20825 * 120.00357 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99809 * 180.02562 * 3 2 1 6 6 C 1.54414 * 129.01222 * 179.97438 * 5 3 2 7 7 C 1.54411 * 78.89438 * 180.64835 * 6 5 3 8 8 C 1.50696 * 129.01772 * 180.65218 * 7 6 5 9 9 O 1.20833 * 119.99655 * 359.97438 * 8 7 6 10 10 O 1.34222 * 120.00432 * 180.27553 * 8 7 6 11 11 C 1.45201 * 117.00137 * 179.71953 * 10 8 7 12 12 C 1.53006 * 109.46884 * 179.97438 * 11 10 8 13 13 C 1.53000 * 109.46714 * 180.02562 * 12 11 10 14 14 C 1.50706 * 109.46894 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99836 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99811 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00139 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99712 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47028 * 59.99978 * 18 16 14 20 20 H 1.48496 * 109.47054 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47310 * 299.99898 * 18 16 14 22 22 C 1.54891 * 84.49440 * 43.15499 * 7 6 5 23 23 C 1.54885 * 129.95481 * 301.17018 * 5 3 2 24 24 H 1.08999 * 109.46683 * 300.00071 * 1 2 3 25 25 H 1.08997 * 109.47097 * 59.99758 * 1 2 3 26 26 H 1.08997 * 109.46933 * 180.02562 * 1 2 3 27 27 H 1.09004 * 114.92895 * 68.16312 * 6 5 3 28 28 H 1.08999 * 114.99012 * 293.13766 * 6 5 3 29 29 H 1.08997 * 109.47380 * 299.99656 * 11 10 8 30 30 H 1.08997 * 109.47403 * 60.00337 * 11 10 8 31 31 H 1.08997 * 109.47361 * 299.99753 * 12 11 10 32 32 H 1.08997 * 109.47194 * 60.00322 * 12 11 10 33 33 H 1.08997 * 109.47366 * 299.99641 * 13 12 11 34 34 H 1.08997 * 109.47587 * 60.00427 * 13 12 11 35 35 H 0.96998 * 120.00042 * 179.97438 * 17 16 14 36 36 H 1.09000 * 114.97479 * 69.39433 * 22 7 6 37 37 H 1.08997 * 114.97980 * 204.56883 * 22 7 6 38 38 H 1.08999 * 116.12271 * 67.75618 * 23 5 3 39 39 H 1.09003 * 113.83197 * 292.59801 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.4742 2.5240 -0.0012 7 6 5.5249 1.3926 -0.0185 8 6 7.0284 1.4941 -0.0188 9 8 7.5607 2.5788 -0.0046 10 8 7.7764 0.3798 -0.0411 11 6 9.2179 0.5535 -0.0463 12 6 9.8967 -0.8176 -0.0717 13 6 11.4157 -0.6346 -0.0766 14 6 12.0842 -1.9850 -0.1022 15 1 11.4855 -2.8838 -0.1134 16 6 13.4602 -2.0730 -0.1102 17 7 14.1892 -0.9785 -0.0960 18 14 14.2888 -3.7468 -0.1413 19 1 13.8752 -4.4813 -1.3638 20 1 15.7631 -3.5693 -0.1461 21 1 13.8869 -4.5206 1.0608 22 6 4.5896 0.7429 -1.0683 23 6 4.5922 0.7131 1.0148 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 4.4472 3.1120 0.9162 28 1 4.4306 3.1245 -0.9098 29 1 9.5123 1.1214 -0.9288 30 1 9.5223 1.0925 0.8508 31 1 9.6023 -1.3851 0.8111 32 1 9.5925 -1.3570 -0.9686 33 1 11.7104 -0.0669 -0.9591 34 1 11.7196 -0.0953 0.8206 35 1 15.1572 -1.0404 -0.1013 36 1 4.5513 1.2546 -2.0300 37 1 4.6706 -0.3411 -1.1487 38 1 4.6734 -0.3727 1.0640 39 1 4.5563 1.1973 1.9907 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830506548.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:56 Heat of formation + Delta-G solvation = -81.729442 kcal Electronic energy + Delta-G solvation = -21149.227169 eV Core-core repulsion = 17639.890059 eV Total energy + Delta-G solvation = -3509.337110 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.135 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.70978 -40.48978 -39.77938 -36.85789 -36.47331 -34.01456 -31.73736 -28.98268 -27.65290 -26.38209 -26.31206 -26.18174 -24.04896 -22.72605 -20.60809 -20.32450 -19.01439 -17.91868 -17.56251 -17.04897 -16.78062 -16.33985 -16.22970 -15.34997 -14.82560 -14.72962 -14.49056 -14.11418 -13.90086 -13.69385 -12.98417 -12.61965 -12.32418 -12.19766 -12.18059 -11.84167 -11.80416 -11.66813 -11.25466 -11.16433 -10.97292 -10.85219 -10.79063 -10.68322 -10.65533 -10.43738 -10.34268 -9.75559 -9.52906 -9.19680 -8.39984 -6.04843 -4.08110 1.57697 2.04621 2.05698 2.69351 3.31529 3.36033 3.38391 3.56549 3.72150 3.79490 3.91631 4.03582 4.36061 4.42871 4.67653 4.75716 4.85021 5.07788 5.10363 5.15922 5.30678 5.31027 5.38578 5.46106 5.49068 5.53383 5.55441 5.57483 5.88486 5.96822 6.42030 6.50583 6.77793 6.94964 7.29638 7.57995 7.68899 7.83964 7.93135 8.33929 8.97865 9.56206 11.06517 Molecular weight = 282.13amu Principal moments of inertia in cm(-1) A = 0.035187 B = 0.002496 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.551339 B =11216.493873 C =11853.635120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.350 6.350 3 C 0.531 3.469 4 O -0.496 6.496 5 C -0.153 4.153 6 C -0.059 4.059 7 C -0.140 4.140 8 C 0.521 3.479 9 O -0.498 6.498 10 O -0.349 6.349 11 C 0.068 3.932 12 C -0.109 4.109 13 C 0.024 3.976 14 C -0.522 4.522 15 H 0.057 0.943 16 C 0.057 3.943 17 N -0.894 5.894 18 Si 0.896 3.104 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.276 1.276 22 C -0.069 4.069 23 C -0.069 4.069 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.105 0.895 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.020 0.980 34 H 0.020 0.980 35 H 0.262 0.738 36 H 0.091 0.909 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.145 2.740 0.175 26.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.266 6.266 3 C 0.373 3.627 4 O -0.383 6.383 5 C -0.154 4.154 6 C -0.096 4.096 7 C -0.141 4.141 8 C 0.363 3.637 9 O -0.386 6.386 10 O -0.265 6.265 11 C -0.005 4.005 12 C -0.146 4.146 13 C -0.013 4.013 14 C -0.561 4.561 15 H 0.075 0.925 16 C -0.145 4.145 17 N -0.533 5.533 18 Si 0.723 3.277 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.106 4.106 23 C -0.106 4.106 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.123 0.877 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.038 0.962 34 H 0.038 0.962 35 H 0.072 0.928 36 H 0.109 0.891 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -25.981 3.408 0.177 26.204 hybrid contribution 0.458 -0.650 -0.010 0.796 sum -25.523 2.757 0.167 25.672 Atomic orbital electron populations 1.23350 0.75630 1.04096 1.02765 1.86502 1.23727 1.32630 1.83746 1.21230 0.87988 0.81422 0.72088 1.90697 1.66204 1.36526 1.44835 1.23587 0.87294 1.01840 1.02717 1.23751 0.87860 0.93658 1.04352 1.23111 0.88452 1.00945 1.01582 1.21072 0.87054 0.82711 0.72848 1.90692 1.73708 1.29261 1.44953 1.86475 1.22506 1.34822 1.82717 1.23598 0.73031 1.01479 1.02383 1.21775 0.98403 0.92384 1.02056 1.19053 0.86801 0.97741 0.97722 1.21127 0.91376 0.92382 1.51178 0.92464 1.25033 0.97558 0.96703 0.95180 1.69952 1.05632 1.27362 1.50389 0.86598 0.78227 0.84163 0.78670 1.20177 1.21271 1.20173 1.24526 0.88417 1.02059 0.95636 1.24051 0.88525 1.01855 0.96167 0.91666 0.91655 0.87684 0.89029 0.88973 0.91286 0.91290 0.92059 0.92058 0.96204 0.96200 0.92814 0.89077 0.88057 0.88024 0.89241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.19 10.56 101.05 1.07 1.26 16 2 O -0.35 -2.98 10.57 -39.26 -0.41 -3.39 16 3 C 0.53 5.23 8.07 36.01 0.29 5.52 16 4 O -0.50 -6.08 16.84 -18.75 -0.32 -6.40 16 5 C -0.15 -1.36 3.61 -170.99 -0.62 -1.98 16 6 C -0.06 -0.56 7.77 -26.70 -0.21 -0.77 16 7 C -0.14 -1.50 3.47 -172.26 -0.60 -2.09 16 8 C 0.52 7.70 8.07 36.00 0.29 7.99 16 9 O -0.50 -8.76 16.84 -18.76 -0.32 -9.08 16 10 O -0.35 -5.59 10.22 -39.24 -0.40 -5.99 16 11 C 0.07 1.21 5.47 37.16 0.20 1.41 16 12 C -0.11 -2.19 5.53 -26.73 -0.15 -2.34 16 13 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 14 C -0.52 -14.53 9.11 -34.44 -0.31 -14.84 16 15 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.89 -26.61 13.29 55.43 0.74 -25.88 16 18 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 22 C -0.07 -0.59 7.95 -24.72 -0.20 -0.78 16 23 C -0.07 -0.59 7.84 -25.98 -0.20 -0.79 16 24 H 0.06 0.35 8.13 -51.93 -0.42 -0.07 16 25 H 0.06 0.35 8.13 -51.93 -0.42 -0.07 16 26 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.09 0.83 7.95 -51.93 -0.41 0.42 16 28 H 0.09 0.83 7.91 -51.93 -0.41 0.42 16 29 H 0.07 1.24 8.13 -51.93 -0.42 0.81 16 30 H 0.07 1.24 8.13 -51.93 -0.42 0.81 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.09 0.70 7.91 -51.93 -0.41 0.29 16 37 H 0.10 0.76 7.97 -51.93 -0.41 0.35 16 38 H 0.10 0.77 7.97 -51.93 -0.41 0.35 16 39 H 0.09 0.69 7.93 -51.93 -0.41 0.28 16 LS Contribution 343.41 15.07 5.18 5.18 Total: -1.00 -32.70 343.41 -7.04 -39.75 By element: Atomic # 1 Polarization: 0.71 SS G_CDS: -5.82 Total: -5.11 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -0.67 Total: -5.42 kcal Atomic # 7 Polarization: -26.61 SS G_CDS: 0.74 Total: -25.88 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -1.45 Total: -24.86 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.70 -7.04 -39.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830506548.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.983 kcal (2) G-P(sol) polarization free energy of solvation -32.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds