Wall clock time and date at job start Tue Mar 31 2020 05:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47107 * 2 1 4 4 N 1.46894 * 109.47303 * 239.99470 * 2 1 3 5 5 C 1.46894 * 111.00326 * 85.00230 * 4 2 1 6 6 C 1.52998 * 109.47488 * 180.02562 * 5 4 2 7 7 C 1.53006 * 109.46687 * 299.99386 * 6 5 4 8 8 C 1.52991 * 109.47270 * 59.99788 * 6 5 4 9 9 C 1.50705 * 109.47042 * 180.02562 * 6 5 4 10 10 H 1.07997 * 119.99770 * 359.97438 * 9 6 5 11 11 C 1.37880 * 119.99737 * 179.97438 * 9 6 5 12 12 N 1.31512 * 119.99998 * 359.97438 * 11 9 6 13 13 Si 1.86794 * 119.99929 * 179.97438 * 11 9 6 14 14 H 1.48501 * 109.47264 * 89.99918 * 13 11 9 15 15 H 1.48495 * 109.47293 * 210.00064 * 13 11 9 16 16 H 1.48502 * 109.47308 * 330.00327 * 13 11 9 17 17 C 1.50706 * 109.46863 * 119.99168 * 2 1 3 18 18 C 1.38711 * 120.40652 * 260.02503 * 17 2 1 19 19 C 1.38568 * 118.43748 * 179.71164 * 18 17 2 20 20 C 1.38397 * 119.14747 * 0.53020 * 19 18 17 21 21 Cl 1.73599 * 119.63613 * 179.73521 * 20 19 18 22 22 N 1.31950 * 120.73033 * 359.45465 * 20 19 18 23 23 C 1.31905 * 121.70652 * 0.27873 * 22 20 19 24 24 H 1.08998 * 109.46819 * 60.00302 * 1 2 3 25 25 H 1.09001 * 109.46854 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47007 * 300.00482 * 1 2 3 27 27 H 1.00904 * 111.00051 * 321.04776 * 4 2 1 28 28 H 1.09007 * 109.46898 * 300.00471 * 5 4 2 29 29 H 1.09002 * 109.47294 * 59.99671 * 5 4 2 30 30 H 1.08998 * 109.46708 * 60.00339 * 7 6 5 31 31 H 1.09000 * 109.47001 * 180.02562 * 7 6 5 32 32 H 1.08993 * 109.47429 * 299.99920 * 7 6 5 33 33 H 1.08992 * 109.47325 * 60.00105 * 8 6 5 34 34 H 1.09000 * 109.47104 * 180.02562 * 8 6 5 35 35 H 1.08998 * 109.47204 * 300.00321 * 8 6 5 36 36 H 0.96995 * 120.00096 * 179.97438 * 12 11 9 37 37 H 1.08002 * 120.77671 * 359.97438 * 18 17 2 38 38 H 1.07990 * 120.42443 * 180.26472 * 19 18 17 39 39 H 1.08005 * 119.60793 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 -1.1993 5 6 2.0826 0.2223 -2.3468 6 6 2.5952 -0.5335 -3.5743 7 6 3.9924 -1.0865 -3.2859 8 6 1.6454 -1.6892 -3.8950 9 6 2.6603 0.4053 -4.7514 10 1 2.3651 1.4377 -4.6356 11 6 3.0967 -0.0538 -5.9761 12 7 3.4566 -1.3108 -6.1169 13 14 3.1767 1.1097 -7.4352 14 1 4.5128 1.7562 -7.4802 15 1 2.9535 0.3468 -8.6895 16 1 2.1273 2.1512 -7.2960 17 6 2.0323 -0.7103 1.2306 18 6 2.4617 0.0138 2.3331 19 6 2.9098 -0.6809 3.4451 20 6 2.9243 -2.0644 3.4148 21 17 3.4897 -2.9475 4.7984 22 7 2.5081 -2.7199 2.3480 23 6 2.0703 -2.0905 1.2746 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.4496 -1.4980 -1.4099 28 1 1.0872 0.6161 -2.5525 29 1 2.7590 1.0460 -2.1182 30 1 3.9457 -1.7654 -2.4345 31 1 4.3578 -1.6246 -4.1605 32 1 4.6690 -0.2632 -3.0575 33 1 0.6501 -1.2953 -4.1004 34 1 2.0109 -2.2280 -4.7692 35 1 1.5987 -2.3681 -3.0435 36 1 3.7632 -1.6339 -6.9785 37 1 2.4431 1.0937 2.3264 38 1 3.2473 -0.1495 4.3225 39 1 1.7380 -2.6610 0.4199 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840785652.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:46 Heat of formation + Delta-G solvation = 18.555673 kcal Electronic energy + Delta-G solvation = -19895.364432 eV Core-core repulsion = 16863.377927 eV Total energy + Delta-G solvation = -3031.986505 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.42377 -37.55443 -36.66644 -35.07031 -32.67161 -31.75424 -30.22182 -28.52112 -25.60799 -25.28219 -24.61208 -24.09237 -23.14179 -20.84887 -18.58012 -17.54547 -16.68060 -16.17929 -15.48424 -14.85960 -14.61162 -14.38900 -14.21093 -14.03950 -13.39909 -13.09094 -12.86669 -12.74362 -12.35819 -11.99214 -11.73646 -11.49904 -11.46059 -11.25938 -11.16008 -10.99124 -10.68705 -10.62459 -10.22592 -10.08707 -9.99207 -9.63410 -9.43313 -9.17070 -8.84368 -8.65798 -8.31911 -7.84066 -5.93810 -4.04571 0.86956 1.09781 1.73014 3.29459 3.36779 3.38854 3.57234 4.33300 4.40904 4.51063 4.72389 4.84681 4.95694 5.06089 5.19442 5.31641 5.32077 5.52970 5.62258 5.78137 5.86187 6.02434 6.22694 6.25766 6.35720 6.43695 6.66752 6.84568 7.02269 7.12527 7.34001 7.41018 7.60652 7.70367 7.72764 7.79522 7.83692 8.17561 8.31253 8.52157 8.96798 9.60735 11.06638 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.033564 B = 0.003366 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.017681 B = 8315.679020 C = 8617.965238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.121 3.879 3 H 0.088 0.912 4 N -0.680 5.680 5 C 0.077 3.923 6 C 0.069 3.931 7 C -0.119 4.119 8 C -0.132 4.132 9 C -0.508 4.508 10 H 0.052 0.948 11 C 0.066 3.934 12 N -0.883 5.883 13 Si 0.888 3.112 14 H -0.282 1.282 15 H -0.287 1.287 16 H -0.276 1.276 17 C -0.102 4.102 18 C -0.064 4.064 19 C -0.155 4.155 20 C 0.164 3.836 21 Cl -0.043 7.043 22 N -0.478 5.478 23 C 0.140 3.860 24 H 0.065 0.935 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.340 0.660 28 H 0.017 0.983 29 H 0.057 0.943 30 H 0.020 0.980 31 H 0.074 0.926 32 H 0.017 0.983 33 H 0.019 0.981 34 H 0.083 0.917 35 H 0.010 0.990 36 H 0.258 0.742 37 H 0.142 0.858 38 H 0.142 0.858 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.889 1.302 17.468 17.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.010 3.990 3 H 0.106 0.894 4 N -0.311 5.311 5 C -0.051 4.051 6 C 0.069 3.931 7 C -0.177 4.177 8 C -0.190 4.190 9 C -0.547 4.547 10 H 0.070 0.930 11 C -0.135 4.135 12 N -0.522 5.522 13 Si 0.716 3.284 14 H -0.208 1.208 15 H -0.213 1.213 16 H -0.201 1.201 17 C -0.105 4.105 18 C -0.090 4.090 19 C -0.176 4.176 20 C 0.000 4.000 21 Cl -0.015 7.015 22 N -0.189 5.189 23 C -0.017 4.017 24 H 0.084 0.916 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.160 0.840 28 H 0.035 0.965 29 H 0.075 0.925 30 H 0.039 0.961 31 H 0.093 0.907 32 H 0.036 0.964 33 H 0.038 0.962 34 H 0.102 0.898 35 H 0.029 0.971 36 H 0.068 0.932 37 H 0.160 0.840 38 H 0.159 0.841 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -3.086 0.259 17.601 17.872 hybrid contribution -0.786 1.559 -0.929 1.978 sum -3.872 1.818 16.672 17.212 Atomic orbital electron populations 1.22495 0.96257 1.02438 1.02412 1.20413 0.92522 0.97519 0.88556 0.89417 1.60723 1.56222 1.10308 1.03887 1.22197 0.98039 0.94723 0.90176 1.18089 0.92552 0.92657 0.89818 1.21644 0.97711 0.98634 0.99714 1.21834 0.97812 0.98731 1.00637 1.21094 1.43725 0.95837 0.94058 0.93005 1.24881 0.95186 0.94985 0.98480 1.69827 1.44427 1.13942 1.24015 0.86664 0.78297 0.81006 0.82387 1.20798 1.21328 1.20120 1.21055 0.98177 0.95214 0.96057 1.21461 0.95116 1.00786 0.91658 1.21739 1.02725 0.92626 1.00495 1.21584 0.99278 0.88908 0.90264 1.98389 1.86983 1.77619 1.38506 1.67024 1.10698 1.41491 0.99658 1.22487 0.93674 0.91663 0.93917 0.91569 0.92293 0.92423 0.84020 0.96477 0.92456 0.96133 0.90737 0.96364 0.96167 0.89802 0.97090 0.93151 0.83989 0.84057 0.81823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.96 9.14 37.16 0.34 -1.62 16 2 C 0.12 1.53 2.81 -68.86 -0.19 1.34 16 3 H 0.09 1.09 7.69 -51.93 -0.40 0.70 16 4 N -0.68 -10.79 4.93 -107.95 -0.53 -11.33 16 5 C 0.08 1.47 4.38 -3.83 -0.02 1.45 16 6 C 0.07 1.60 0.57 -155.66 -0.09 1.51 16 7 C -0.12 -2.84 8.09 37.16 0.30 -2.54 16 8 C -0.13 -2.99 7.92 37.15 0.29 -2.69 16 9 C -0.51 -13.28 8.01 -34.44 -0.28 -13.56 16 10 H 0.05 1.35 7.74 -52.49 -0.41 0.94 16 11 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 12 N -0.88 -24.07 9.35 55.43 0.52 -23.55 16 13 Si 0.89 20.76 29.54 -169.99 -5.02 15.73 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 15 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 16 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 17 C -0.10 -1.25 4.97 -104.48 -0.52 -1.77 16 18 C -0.06 -0.67 9.82 -39.28 -0.39 -1.05 16 19 C -0.15 -1.63 9.88 -39.40 -0.39 -2.02 16 20 C 0.16 2.08 7.27 -17.44 -0.13 1.96 16 21 Cl -0.04 -0.49 29.11 -51.86 -1.51 -2.00 16 22 N -0.48 -6.87 10.34 -10.36 -0.11 -6.98 16 23 C 0.14 1.88 10.49 -17.55 -0.18 1.69 16 24 H 0.07 0.79 7.45 -51.93 -0.39 0.40 16 25 H 0.06 0.64 8.13 -51.93 -0.42 0.21 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.34 5.30 5.88 -39.29 -0.23 5.07 16 28 H 0.02 0.32 7.44 -51.93 -0.39 -0.06 16 29 H 0.06 1.13 8.06 -51.93 -0.42 0.71 16 30 H 0.02 0.44 7.60 -51.93 -0.39 0.05 16 31 H 0.07 1.96 6.07 -51.93 -0.32 1.65 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.08 2.14 6.07 -51.93 -0.32 1.82 16 35 H 0.01 0.21 6.57 -51.93 -0.34 -0.13 16 36 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 37 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 38 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 39 H 0.16 2.09 7.26 -52.48 -0.38 1.71 16 LS Contribution 327.91 15.07 4.94 4.94 Total: -1.00 -27.59 327.91 -8.69 -36.28 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -5.65 Total: 2.55 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -1.34 Total: -15.65 kcal Atomic # 7 Polarization: -41.74 SS G_CDS: -0.12 Total: -41.86 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.51 Total: -2.00 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -27.59 -8.69 -36.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840785652.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.837 kcal (2) G-P(sol) polarization free energy of solvation -27.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds