Wall clock time and date at job start Tue Mar 31 2020 05:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47168 * 2 1 4 4 N 1.46903 * 109.47205 * 120.00143 * 2 1 3 5 5 C 1.46893 * 110.99825 * 274.99898 * 4 2 1 6 6 C 1.52999 * 109.47093 * 179.97438 * 5 4 2 7 7 C 1.53004 * 109.47098 * 300.00420 * 6 5 4 8 8 C 1.53006 * 109.47170 * 59.99978 * 6 5 4 9 9 C 1.50697 * 109.47459 * 180.02562 * 6 5 4 10 10 H 1.08000 * 119.99775 * 359.97438 * 9 6 5 11 11 C 1.37873 * 120.00180 * 180.02562 * 9 6 5 12 12 N 1.31517 * 120.00291 * 359.97438 * 11 9 6 13 13 Si 1.86809 * 120.00232 * 179.97438 * 11 9 6 14 14 H 1.48497 * 109.46994 * 59.99445 * 13 11 9 15 15 H 1.48496 * 109.47237 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.46872 * 300.00115 * 13 11 9 17 17 C 1.50706 * 109.47325 * 240.00433 * 2 1 3 18 18 C 1.38711 * 120.40652 * 100.02181 * 17 2 1 19 19 C 1.38568 * 118.43748 * 179.71164 * 18 17 2 20 20 C 1.38397 * 119.14747 * 0.53020 * 19 18 17 21 21 Cl 1.73599 * 119.63613 * 179.73521 * 20 19 18 22 22 N 1.31950 * 120.73033 * 359.45465 * 20 19 18 23 23 C 1.31905 * 121.70652 * 0.27873 * 22 20 19 24 24 H 1.09000 * 109.46982 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47291 * 299.99533 * 1 2 3 26 26 H 1.09000 * 109.47134 * 60.00229 * 1 2 3 27 27 H 1.00895 * 110.99597 * 38.95484 * 4 2 1 28 28 H 1.09002 * 109.47669 * 299.99959 * 5 4 2 29 29 H 1.09001 * 109.47238 * 60.00061 * 5 4 2 30 30 H 1.08995 * 109.47351 * 59.99787 * 7 6 5 31 31 H 1.09006 * 109.46901 * 180.02562 * 7 6 5 32 32 H 1.09001 * 109.46907 * 299.99588 * 7 6 5 33 33 H 1.09002 * 109.46715 * 60.00426 * 8 6 5 34 34 H 1.08993 * 109.47004 * 179.97438 * 8 6 5 35 35 H 1.08994 * 109.47172 * 300.00694 * 8 6 5 36 36 H 0.96997 * 119.99945 * 179.97438 * 12 11 9 37 37 H 1.08002 * 120.77671 * 359.97438 * 18 17 2 38 38 H 1.07990 * 120.42443 * 180.26472 * 19 18 17 39 39 H 1.08005 * 119.60759 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0825 0.2225 2.3468 6 6 2.5950 -0.5332 3.5744 7 6 1.6451 -1.6890 3.8951 8 6 3.9922 -1.0864 3.2861 9 6 2.6589 0.4053 4.7517 10 1 2.3638 1.4377 4.6358 11 6 3.0950 -0.0538 5.9764 12 7 3.4548 -1.3109 6.1175 13 14 3.1749 1.1098 7.4357 14 1 1.8188 1.6463 7.7157 15 1 3.6722 0.3762 8.6272 16 1 4.0964 2.2318 7.1242 17 6 2.0324 -0.7103 -1.2306 18 6 2.4627 0.0137 -2.3326 19 6 2.9222 -0.6809 -3.4401 20 6 2.9261 -2.0646 -3.4140 21 17 3.4926 -2.9477 -4.7971 22 7 2.5090 -2.7201 -2.3474 23 6 2.0703 -2.0906 -1.2745 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.4495 -1.4979 1.4099 28 1 2.7588 1.0462 2.1182 29 1 1.0871 0.6162 2.5525 30 1 1.5986 -2.3680 3.0437 31 1 2.0101 -2.2272 4.7700 32 1 0.6498 -1.2950 4.1005 33 1 4.6689 -0.2630 3.0577 34 1 4.3575 -1.6244 4.1608 35 1 3.9456 -1.7653 2.4347 36 1 3.7620 -1.6337 6.9790 37 1 2.4440 1.0936 -2.3260 38 1 3.2689 -0.1494 -4.3139 39 1 1.7373 -2.6610 -0.4200 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840785654.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:49 Heat of formation + Delta-G solvation = 18.601056 kcal Electronic energy + Delta-G solvation = -19895.555142 eV Core-core repulsion = 16863.570605 eV Total energy + Delta-G solvation = -3031.984537 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.42339 -37.55399 -36.66600 -35.06948 -32.67108 -31.75352 -30.22102 -28.52097 -25.60542 -25.28230 -24.61109 -24.09202 -23.14161 -20.84882 -18.57916 -17.54527 -16.68034 -16.17693 -15.48036 -14.86259 -14.61207 -14.38915 -14.21216 -14.03890 -13.39818 -13.08790 -12.86824 -12.74012 -12.35868 -11.99147 -11.73641 -11.49720 -11.46012 -11.25964 -11.15225 -10.98244 -10.67702 -10.65881 -10.22362 -10.08660 -9.99036 -9.63463 -9.43055 -9.16855 -8.84409 -8.66460 -8.31506 -7.84088 -5.93573 -4.04474 0.86972 1.09787 1.73061 3.30711 3.36099 3.38141 3.57228 4.33373 4.40927 4.51119 4.72426 4.84702 4.95669 5.06092 5.19491 5.31704 5.32142 5.53003 5.62292 5.78146 5.86209 6.02458 6.22704 6.25777 6.35722 6.43717 6.66847 6.84652 7.02334 7.12579 7.33989 7.41051 7.60620 7.70379 7.72761 7.79518 7.83726 8.17673 8.31251 8.52229 8.96703 9.60803 11.06820 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.033548 B = 0.003367 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.419436 B = 8314.416906 C = 8616.256237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.121 3.879 3 H 0.088 0.912 4 N -0.680 5.680 5 C 0.077 3.923 6 C 0.070 3.930 7 C -0.132 4.132 8 C -0.119 4.119 9 C -0.509 4.509 10 H 0.051 0.949 11 C 0.066 3.934 12 N -0.884 5.884 13 Si 0.888 3.112 14 H -0.279 1.279 15 H -0.288 1.288 16 H -0.278 1.278 17 C -0.102 4.102 18 C -0.064 4.064 19 C -0.155 4.155 20 C 0.164 3.836 21 Cl -0.043 7.043 22 N -0.478 5.478 23 C 0.140 3.860 24 H 0.058 0.942 25 H 0.065 0.935 26 H 0.057 0.943 27 H 0.340 0.660 28 H 0.057 0.943 29 H 0.017 0.983 30 H 0.010 0.990 31 H 0.083 0.917 32 H 0.019 0.981 33 H 0.017 0.983 34 H 0.074 0.926 35 H 0.020 0.980 36 H 0.259 0.741 37 H 0.142 0.858 38 H 0.142 0.858 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.861 1.294 -17.454 17.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.010 3.990 3 H 0.106 0.894 4 N -0.311 5.311 5 C -0.051 4.051 6 C 0.069 3.931 7 C -0.190 4.190 8 C -0.177 4.177 9 C -0.548 4.548 10 H 0.069 0.931 11 C -0.135 4.135 12 N -0.522 5.522 13 Si 0.717 3.283 14 H -0.205 1.205 15 H -0.214 1.214 16 H -0.204 1.204 17 C -0.105 4.105 18 C -0.090 4.090 19 C -0.176 4.176 20 C 0.000 4.000 21 Cl -0.015 7.015 22 N -0.189 5.189 23 C -0.017 4.017 24 H 0.077 0.923 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.160 0.840 28 H 0.075 0.925 29 H 0.035 0.965 30 H 0.029 0.971 31 H 0.102 0.898 32 H 0.038 0.962 33 H 0.036 0.964 34 H 0.093 0.907 35 H 0.039 0.961 36 H 0.069 0.931 37 H 0.160 0.840 38 H 0.159 0.841 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -3.051 0.247 -17.586 17.850 hybrid contribution -0.800 1.570 0.927 1.991 sum -3.851 1.817 -16.658 17.194 Atomic orbital electron populations 1.22494 0.96261 1.02439 1.02411 1.20415 0.92525 0.97517 0.88556 0.89415 1.60722 1.56225 1.10307 1.03881 1.22196 0.98037 0.94723 0.90179 1.18084 0.92549 0.92647 0.89798 1.21842 0.97814 0.98735 1.00635 1.21642 0.97714 0.98632 0.99711 1.21056 1.43860 0.95831 0.94057 0.93057 1.24879 0.95162 0.94990 0.98462 1.69819 1.44347 1.13965 1.24091 0.86726 0.78271 0.81084 0.82257 1.20480 1.21355 1.20405 1.21055 0.98205 0.95213 0.96022 1.21460 0.95078 1.00788 0.91707 1.21739 1.02643 0.92624 1.00561 1.21584 0.99282 0.88906 0.90273 1.98389 1.86937 1.77617 1.38556 1.67024 1.10715 1.41495 0.99631 1.22487 0.93670 0.91662 0.93931 0.92294 0.91572 0.92422 0.84018 0.92455 0.96476 0.97092 0.89793 0.96178 0.96364 0.90742 0.96126 0.93088 0.83989 0.84056 0.81824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.96 9.14 37.16 0.34 -1.62 16 2 C 0.12 1.53 2.81 -68.86 -0.19 1.34 16 3 H 0.09 1.10 7.69 -51.93 -0.40 0.70 16 4 N -0.68 -10.80 4.93 -107.95 -0.53 -11.33 16 5 C 0.08 1.47 4.38 -3.83 -0.02 1.45 16 6 C 0.07 1.61 0.57 -155.66 -0.09 1.52 16 7 C -0.13 -2.99 7.92 37.16 0.29 -2.70 16 8 C -0.12 -2.84 8.09 37.16 0.30 -2.54 16 9 C -0.51 -13.31 8.01 -34.44 -0.28 -13.59 16 10 H 0.05 1.33 7.74 -52.49 -0.41 0.93 16 11 C 0.07 1.76 5.15 -17.82 -0.09 1.67 16 12 N -0.88 -24.08 9.35 55.43 0.52 -23.56 16 13 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 14 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 15 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 C -0.10 -1.25 4.97 -104.48 -0.52 -1.77 16 18 C -0.06 -0.67 9.82 -39.28 -0.39 -1.06 16 19 C -0.15 -1.63 9.88 -39.40 -0.39 -2.02 16 20 C 0.16 2.08 7.27 -17.44 -0.13 1.95 16 21 Cl -0.04 -0.49 29.11 -51.86 -1.51 -2.00 16 22 N -0.48 -6.87 10.34 -10.36 -0.11 -6.98 16 23 C 0.14 1.88 10.49 -17.55 -0.18 1.69 16 24 H 0.06 0.64 8.13 -51.93 -0.42 0.21 16 25 H 0.07 0.79 7.45 -51.93 -0.39 0.40 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.34 5.30 5.88 -39.29 -0.23 5.07 16 28 H 0.06 1.13 8.06 -51.93 -0.42 0.71 16 29 H 0.02 0.32 7.44 -51.93 -0.39 -0.06 16 30 H 0.01 0.21 6.57 -51.93 -0.34 -0.13 16 31 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 1.96 6.07 -51.93 -0.32 1.65 16 35 H 0.02 0.45 7.60 -51.93 -0.39 0.05 16 36 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 37 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 38 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 39 H 0.16 2.09 7.26 -52.48 -0.38 1.71 16 LS Contribution 327.91 15.07 4.94 4.94 Total: -1.00 -27.57 327.91 -8.69 -36.26 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -5.65 Total: 2.59 kcal Atomic # 6 Polarization: -14.32 SS G_CDS: -1.34 Total: -15.66 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: -0.12 Total: -41.87 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.51 Total: -2.00 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -27.57 -8.69 -36.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840785654.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.864 kcal (2) G-P(sol) polarization free energy of solvation -27.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds