Wall clock time and date at job start Tue Mar 31 2020 05:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42894 * 114.00246 * 2 1 4 4 C 1.53004 * 109.47589 * 180.02562 * 3 2 1 5 5 O 1.42892 * 109.47139 * 64.99552 * 4 3 2 6 6 C 1.42898 * 114.00293 * 180.02562 * 5 4 3 7 7 C 1.52995 * 109.47543 * 180.02562 * 6 5 4 8 8 O 1.42907 * 109.47187 * 64.99962 * 7 6 5 9 9 C 1.35900 * 117.00011 * 180.02562 * 8 7 6 10 10 C 1.38827 * 120.02115 * 359.72410 * 9 8 7 11 11 C 1.38189 * 120.07765 * 179.72294 * 10 9 8 12 12 C 1.38149 * 120.12438 * 0.55361 * 11 10 9 13 13 C 1.38890 * 120.03979 * 359.72018 * 12 11 10 14 14 O 1.35754 * 120.03567 * 179.97438 * 13 12 11 15 15 C 1.34836 * 116.99505 * 174.48878 * 14 13 12 16 16 H 1.08001 * 120.00214 * 5.05661 * 15 14 13 17 17 C 1.38659 * 119.99788 * 185.05604 * 15 14 13 18 18 N 1.31554 * 119.99670 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99953 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47077 * 90.00199 * 19 17 15 21 21 H 1.48493 * 109.47220 * 210.00502 * 19 17 15 22 22 H 1.48506 * 109.46953 * 330.00532 * 19 17 15 23 23 C 1.38571 * 120.01894 * 179.97438 * 9 8 7 24 24 H 1.09000 * 109.46937 * 300.00293 * 1 2 3 25 25 H 1.09001 * 109.47084 * 60.00004 * 1 2 3 26 26 H 1.08998 * 109.46862 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47462 * 59.99941 * 3 2 1 28 28 H 1.09000 * 109.47260 * 300.00238 * 3 2 1 29 29 H 1.09002 * 109.46313 * 304.99800 * 4 3 2 30 30 H 1.08998 * 109.47130 * 185.00404 * 4 3 2 31 31 H 1.09003 * 109.46805 * 59.99746 * 6 5 4 32 32 H 1.09005 * 109.46916 * 300.00256 * 6 5 4 33 33 H 1.09002 * 109.47372 * 305.00067 * 7 6 5 34 34 H 1.08996 * 109.47272 * 184.99769 * 7 6 5 35 35 H 1.08005 * 119.95663 * 359.97438 * 10 9 8 36 36 H 1.08008 * 119.93521 * 180.25076 * 11 10 9 37 37 H 1.08003 * 119.97608 * 179.69786 * 12 11 10 38 38 H 0.97005 * 119.99481 * 179.97438 * 18 17 15 39 39 H 1.08003 * 120.06077 * 359.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9649 0.5796 -1.2219 6 6 5.3811 0.4191 -1.3245 7 6 5.7246 -0.2341 -2.6648 8 8 5.3659 0.6480 -3.7304 9 6 5.6064 0.2161 -4.9963 10 6 6.1815 -1.0297 -5.2076 11 6 6.4213 -1.4724 -6.4945 12 6 6.1001 -0.6725 -7.5741 13 6 5.5297 0.5770 -7.3683 14 8 5.2146 1.3632 -8.4292 15 6 4.5605 2.5126 -8.1663 16 1 4.3832 2.8113 -7.1437 17 6 4.1157 3.3112 -9.2089 18 7 4.3314 2.9471 -10.4545 19 14 3.2090 4.9032 -8.8448 20 1 4.1863 6.0162 -8.7385 21 1 2.2505 5.1892 -9.9423 22 1 2.4694 4.7698 -7.5639 23 6 5.2824 1.0210 -6.0767 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.6887 1.8464 0.8900 28 1 1.6886 1.8463 -0.8900 29 1 3.8514 0.5682 0.8410 30 1 3.9785 2.1765 0.0890 31 1 5.7350 -0.2134 -0.5104 32 1 5.8628 1.3949 -1.2623 33 1 5.1729 -1.1687 -2.7655 34 1 6.7946 -0.4375 -2.7062 35 1 6.4381 -1.6551 -4.3653 36 1 6.8651 -2.4437 -6.6564 37 1 6.2930 -1.0190 -8.5787 38 1 4.0198 3.5056 -11.1839 39 1 4.8382 1.9919 -5.9140 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842110133.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:54 Heat of formation + Delta-G solvation = -129.036809 kcal Electronic energy + Delta-G solvation = -21370.389429 eV Core-core repulsion = 17859.000917 eV Total energy + Delta-G solvation = -3511.388511 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.59743 -38.64161 -38.03696 -37.18006 -35.54599 -32.22813 -31.51400 -29.87157 -28.72190 -28.40086 -26.42658 -25.29815 -23.21507 -22.74778 -21.77579 -20.74888 -18.27545 -17.63825 -17.26470 -16.96035 -15.97293 -15.74912 -15.68353 -15.15994 -15.14457 -14.84946 -14.76416 -14.25713 -13.80883 -13.51976 -13.13897 -12.91229 -12.69311 -12.41022 -12.20152 -11.72413 -11.67161 -11.55649 -11.37088 -11.15799 -10.97295 -10.91010 -10.50093 -10.33235 -10.22309 -9.89577 -9.74133 -9.39171 -8.79794 -7.64322 -7.20044 -6.41937 -4.00986 2.27660 2.39857 3.16545 3.17615 3.22950 3.46315 3.56365 3.59696 4.01086 4.61274 4.74642 4.88983 4.97223 5.04120 5.10673 5.13155 5.13665 5.18663 5.23183 5.27776 5.32117 5.44685 5.48850 5.52712 5.59454 5.68643 5.85166 6.17871 6.33109 6.45114 6.72862 6.90298 7.07968 7.08104 7.14597 7.27752 7.47383 7.62901 8.04149 8.12252 9.04031 9.72418 10.75938 Molecular weight = 282.13amu Principal moments of inertia in cm(-1) A = 0.012820 B = 0.003943 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.513324 B = 7099.962771 C = 8597.509564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.062 3.938 4 C 0.063 3.937 5 O -0.370 6.370 6 C 0.065 3.935 7 C 0.065 3.935 8 O -0.312 6.312 9 C 0.168 3.832 10 C -0.298 4.298 11 C -0.044 4.044 12 C -0.222 4.222 13 C 0.184 3.816 14 O -0.172 6.172 15 C -0.392 4.392 16 H 0.094 0.906 17 C 0.040 3.960 18 N -0.863 5.863 19 Si 0.941 3.059 20 H -0.273 1.273 21 H -0.277 1.277 22 H -0.267 1.267 23 C -0.264 4.264 24 H 0.038 0.962 25 H 0.043 0.957 26 H 0.085 0.915 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.111 0.889 36 H 0.114 0.886 37 H 0.118 0.882 38 H 0.270 0.730 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.596 -4.064 20.659 21.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C -0.015 4.015 4 C -0.014 4.014 5 O -0.289 6.289 6 C -0.012 4.012 7 C -0.011 4.011 8 O -0.226 6.226 9 C 0.123 3.877 10 C -0.318 4.318 11 C -0.062 4.062 12 C -0.241 4.241 13 C 0.129 3.871 14 O -0.075 6.075 15 C -0.468 4.468 16 H 0.112 0.888 17 C -0.164 4.164 18 N -0.498 5.498 19 Si 0.765 3.235 20 H -0.199 1.199 21 H -0.203 1.203 22 H -0.191 1.191 23 C -0.284 4.284 24 H 0.057 0.943 25 H 0.062 0.938 26 H 0.104 0.896 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.129 0.871 36 H 0.132 0.868 37 H 0.136 0.864 38 H 0.080 0.920 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.718 -4.027 20.089 20.560 hybrid contribution -0.390 0.909 0.507 1.112 sum -2.109 -3.117 20.596 20.937 Atomic orbital electron populations 1.22746 0.81073 1.02837 0.99907 1.87946 1.19614 1.27357 1.95382 1.22569 0.92412 0.85531 1.00987 1.22500 0.93503 0.97593 0.87763 1.88079 1.21364 1.81863 1.37569 1.22556 0.82575 1.00442 0.95619 1.22674 0.99698 0.93719 0.84985 1.86072 1.80023 1.43915 1.12585 1.18658 0.93609 0.92468 0.82940 1.20643 1.15516 0.97979 0.97632 1.20396 0.96540 0.97778 0.91517 1.20149 1.10740 0.94168 0.99084 1.19024 0.91305 0.90026 0.86712 1.84001 1.64762 1.30382 1.28354 1.21390 1.34714 0.96055 0.94638 0.88849 1.25290 0.97245 0.99494 0.94394 1.70045 1.43538 1.37804 0.98386 0.85709 0.79025 0.80240 0.78486 1.19855 1.20251 1.19099 1.20319 1.14939 1.03121 0.90052 0.94331 0.93803 0.89611 0.91946 0.92039 0.92641 0.91729 0.91491 0.92277 0.91353 0.90812 0.87143 0.86779 0.86396 0.92028 0.84838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.39 16 2 O -0.38 -4.69 10.67 -40.08 -0.43 -5.12 16 3 C 0.06 0.63 6.32 37.16 0.23 0.86 16 4 C 0.06 0.65 6.32 37.16 0.23 0.88 16 5 O -0.37 -5.22 10.27 -49.79 -0.51 -5.73 16 6 C 0.06 0.75 6.32 37.16 0.23 0.98 16 7 C 0.06 0.90 5.12 37.16 0.19 1.09 16 8 O -0.31 -5.90 10.10 -24.27 -0.25 -6.15 16 9 C 0.17 3.50 6.68 -39.24 -0.26 3.24 16 10 C -0.30 -5.53 9.04 -39.38 -0.36 -5.88 16 11 C -0.04 -0.82 10.03 -39.63 -0.40 -1.22 16 12 C -0.22 -4.89 9.99 -39.37 -0.39 -5.28 16 13 C 0.18 4.66 6.64 -39.13 -0.26 4.40 16 14 O -0.17 -5.05 9.76 0.02 0.00 -5.05 16 15 C -0.39 -11.30 9.49 30.89 0.29 -11.01 16 16 H 0.09 2.54 5.20 -52.49 -0.27 2.27 16 17 C 0.04 1.12 5.49 -17.52 -0.10 1.03 16 18 N -0.86 -25.66 13.67 55.48 0.76 -24.90 16 19 Si 0.94 21.03 29.55 -169.99 -5.02 16.01 16 20 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 21 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 22 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 23 C -0.26 -6.31 9.10 -39.25 -0.36 -6.67 16 24 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.94 7.67 -51.93 -0.40 0.54 16 34 H 0.07 0.86 7.65 -51.93 -0.40 0.46 16 35 H 0.11 1.69 6.29 -52.48 -0.33 1.36 16 36 H 0.11 1.72 8.06 -52.48 -0.42 1.29 16 37 H 0.12 2.47 8.06 -52.48 -0.42 2.05 16 38 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.13 3.27 5.64 -52.48 -0.30 2.98 16 LS Contribution 337.06 15.07 5.08 5.08 Total: -1.00 -34.10 337.06 -5.67 -39.77 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -5.48 Total: 2.27 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: 0.18 Total: -16.18 kcal Atomic # 7 Polarization: -25.66 SS G_CDS: 0.76 Total: -24.90 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -1.18 Total: -22.04 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.10 -5.67 -39.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842110133.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.267 kcal (2) G-P(sol) polarization free energy of solvation -34.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds