Wall clock time and date at job start Tue Mar 31 2020 05:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37325 * 125.82812 * 2 1 4 4 N 1.29418 * 108.82974 * 179.69825 * 3 2 1 5 5 N 1.40166 * 108.13435 * 0.44509 * 4 3 2 6 6 C 1.46502 * 126.35247 * 179.81715 * 5 4 3 7 7 N 1.46895 * 109.47378 * 269.69153 * 6 5 4 8 8 C 1.46850 * 111.00333 * 66.04398 * 7 6 5 9 9 C 1.53036 * 109.52384 * 174.16360 * 8 7 6 10 10 C 1.53120 * 109.27700 * 59.18090 * 9 8 7 11 11 C 1.53120 * 109.15972 * 302.34018 * 10 9 8 12 12 H 1.08997 * 109.50809 * 297.71813 * 11 10 9 13 13 C 1.50703 * 109.50080 * 177.59961 * 11 10 9 14 14 H 1.08006 * 119.99534 * 240.00438 * 13 11 10 15 15 C 1.37877 * 120.00107 * 60.00519 * 13 11 10 16 16 N 1.31516 * 119.99901 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 119.99711 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47131 * 89.99759 * 17 15 13 19 19 H 1.48504 * 109.46500 * 209.99809 * 17 15 13 20 20 H 1.48494 * 109.47320 * 329.99171 * 17 15 13 21 21 C 1.46850 * 110.99945 * 301.83330 * 7 6 5 22 22 C 1.34810 * 125.83091 * 179.97438 * 2 1 3 23 23 S 1.71206 * 126.29748 * 0.05503 * 22 2 1 24 24 H 1.09002 * 109.46589 * 270.02249 * 1 2 3 25 25 H 1.09004 * 109.47335 * 30.01952 * 1 2 3 26 26 H 1.09001 * 109.47489 * 150.02341 * 1 2 3 27 27 H 1.08002 * 125.58184 * 359.95744 * 3 2 1 28 28 H 1.09000 * 109.47311 * 149.68333 * 6 5 4 29 29 H 1.09007 * 109.47282 * 29.68955 * 6 5 4 30 30 H 1.08995 * 109.45831 * 54.14149 * 8 7 6 31 31 H 1.08998 * 109.45719 * 294.17998 * 8 7 6 32 32 H 1.08998 * 109.49982 * 179.12006 * 9 8 7 33 33 H 1.08992 * 109.50379 * 299.23548 * 9 8 7 34 34 H 1.08996 * 109.52458 * 62.25353 * 10 9 8 35 35 H 1.08999 * 109.51695 * 182.37635 * 10 9 8 36 36 H 0.96993 * 120.00001 * 180.02562 * 16 15 13 37 37 H 1.09007 * 109.46080 * 65.82377 * 21 7 6 38 38 H 1.09001 * 109.46443 * 305.85821 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2689 1.1134 0.0000 4 7 3.5065 0.7351 0.0065 5 7 3.5343 -0.6663 0.0005 6 6 4.7312 -1.5111 0.0009 7 7 5.1317 -1.7937 -1.3839 8 6 5.5689 -0.5687 -2.0657 9 6 6.1137 -0.9215 -3.4516 10 6 5.0174 -1.6165 -4.2638 11 6 4.5459 -2.8624 -3.5088 12 1 5.3760 -3.5612 -3.4054 13 6 3.4258 -3.5199 -4.2731 14 1 2.4553 -3.6377 -3.8140 15 6 3.6400 -3.9711 -5.5582 16 7 4.8217 -3.8272 -6.1173 17 14 2.2513 -4.7855 -6.5057 18 1 1.4947 -3.7538 -7.2595 19 1 2.8156 -5.7781 -7.4553 20 1 1.3399 -5.4723 -5.5555 21 6 4.0465 -2.4534 -2.1213 22 6 2.2542 -1.0930 0.0005 23 16 1.7288 -2.7224 -0.0001 24 1 -0.3632 0.0004 1.0277 25 1 -0.3634 0.8898 -0.5141 26 1 -0.3634 -0.8902 -0.5135 27 1 1.9246 2.1371 -0.0007 28 1 4.5148 -2.4476 0.5149 29 1 5.5412 -0.9934 0.5149 30 1 6.3512 -0.0865 -1.4797 31 1 4.7228 0.1104 -2.1701 32 1 6.4236 -0.0104 -3.9634 33 1 6.9684 -1.5897 -3.3473 34 1 4.1783 -0.9346 -4.4016 35 1 5.4139 -1.9073 -5.2366 36 1 4.9723 -4.1443 -7.0214 37 1 3.2075 -1.7653 -2.2255 38 1 3.7233 -3.3400 -1.5757 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853526567.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:43 Heat of formation + Delta-G solvation = 101.914348 kcal Electronic energy + Delta-G solvation = -21025.271098 eV Core-core repulsion = 18031.235753 eV Total energy + Delta-G solvation = -2994.035344 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.121 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.67561 -38.44375 -35.51770 -33.76298 -32.54848 -31.01877 -29.88590 -28.20508 -26.08450 -24.92950 -23.31726 -22.89589 -21.66459 -21.29019 -18.91335 -17.97254 -16.93753 -16.49285 -16.16903 -15.91174 -15.27869 -14.98700 -14.45158 -14.21818 -13.67726 -13.24071 -13.13281 -12.66136 -12.59968 -12.34975 -12.00575 -11.79792 -11.46498 -11.09449 -10.96058 -10.86083 -10.60859 -10.57503 -10.48351 -10.10088 -9.79365 -9.48805 -9.08612 -8.68763 -8.34409 -8.15902 -7.42680 -7.21798 -5.89922 -3.94150 1.20553 1.43297 1.61832 2.46393 2.59724 3.36971 3.43388 3.50072 4.07852 4.29132 4.36903 4.56351 4.59887 4.92645 5.08372 5.25717 5.40108 5.49950 5.51471 5.59700 5.71794 5.99416 6.10035 6.20045 6.36102 6.44557 6.58514 6.66942 6.72644 7.06620 7.08852 7.19748 7.30250 7.48118 7.67107 7.84979 8.11117 8.21711 8.56442 9.10405 9.69673 11.16561 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.017521 B = 0.006450 C = 0.005383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.674078 B = 4339.784123 C = 5200.617268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.504 5.504 3 C 0.238 3.762 4 N -0.280 5.280 5 N -0.390 5.390 6 C 0.294 3.706 7 N -0.519 5.519 8 C 0.060 3.940 9 C -0.118 4.118 10 C -0.111 4.111 11 C 0.055 3.945 12 H 0.034 0.966 13 C -0.505 4.505 14 H 0.057 0.943 15 C 0.061 3.939 16 N -0.892 5.892 17 Si 0.889 3.111 18 H -0.283 1.283 19 H -0.287 1.287 20 H -0.272 1.272 21 C 0.065 3.935 22 C 0.459 3.541 23 S -0.567 6.567 24 H 0.083 0.917 25 H 0.092 0.908 26 H 0.108 0.892 27 H 0.236 0.764 28 H 0.125 0.875 29 H 0.107 0.893 30 H 0.061 0.939 31 H 0.028 0.972 32 H 0.047 0.953 33 H 0.063 0.937 34 H 0.025 0.975 35 H 0.093 0.907 36 H 0.258 0.742 37 H 0.018 0.982 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.247 13.525 12.883 19.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.206 5.206 3 C -0.062 4.062 4 N -0.100 5.100 5 N -0.188 5.188 6 C 0.085 3.915 7 N -0.242 5.242 8 C -0.067 4.067 9 C -0.155 4.155 10 C -0.149 4.149 11 C 0.036 3.964 12 H 0.052 0.948 13 C -0.544 4.544 14 H 0.075 0.925 15 C -0.139 4.139 16 N -0.532 5.532 17 Si 0.717 3.283 18 H -0.210 1.210 19 H -0.213 1.213 20 H -0.197 1.197 21 C -0.061 4.061 22 C 0.099 3.901 23 S -0.440 6.440 24 H 0.102 0.898 25 H 0.111 0.889 26 H 0.126 0.874 27 H 0.252 0.748 28 H 0.143 0.857 29 H 0.125 0.875 30 H 0.079 0.921 31 H 0.047 0.953 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.044 0.956 35 H 0.111 0.889 36 H 0.068 0.932 37 H 0.037 0.963 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.939 12.433 12.713 18.023 hybrid contribution -1.913 1.005 -0.680 2.265 sum -4.852 13.438 12.033 18.679 Atomic orbital electron populations 1.22174 0.72930 1.06177 1.04495 1.46208 1.09859 1.04339 1.60177 1.26432 0.86003 0.95340 0.98467 1.77167 1.18183 0.93010 1.21637 1.51278 1.06941 1.02575 1.58007 1.23487 0.80713 0.92858 0.94425 1.62616 1.37079 1.23411 1.01072 1.22103 0.98314 0.90007 0.96305 1.21696 1.00410 0.99659 0.93780 1.21679 0.94936 0.96770 1.01541 1.18701 0.96463 0.93260 0.88008 0.94790 1.21156 0.97300 1.37351 0.98609 0.92510 1.24919 0.95448 0.95934 0.97601 1.69888 1.21407 1.47369 1.14525 0.86638 0.82573 0.79305 0.79816 1.20970 1.21280 1.19729 1.22700 0.88823 0.97417 0.97135 1.24108 0.84120 0.94287 0.87601 1.93527 1.83399 0.94577 1.72482 0.89826 0.88907 0.87377 0.74755 0.85681 0.87520 0.92082 0.95327 0.93384 0.91848 0.95597 0.88908 0.93198 0.96316 0.89290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.64 10.90 59.85 0.65 1.29 16 2 N -0.50 -5.75 3.14 -126.64 -0.40 -6.15 16 3 C 0.24 2.18 12.65 -89.14 -1.13 1.05 16 4 N -0.28 -3.55 11.79 29.86 0.35 -3.20 16 5 N -0.39 -5.89 2.90 -64.99 -0.19 -6.08 16 6 C 0.29 4.49 6.28 -63.32 -0.40 4.09 16 7 N -0.52 -9.66 4.87 -238.57 -1.16 -10.82 16 8 C 0.06 1.07 5.19 -3.83 -0.02 1.05 16 9 C -0.12 -2.33 6.09 -26.65 -0.16 -2.49 16 10 C -0.11 -2.71 5.02 -26.61 -0.13 -2.84 16 11 C 0.05 1.42 2.26 -91.69 -0.21 1.21 16 12 H 0.03 0.97 8.14 -51.93 -0.42 0.55 16 13 C -0.51 -14.55 8.56 -34.44 -0.29 -14.84 16 14 H 0.06 1.67 7.74 -52.48 -0.41 1.27 16 15 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 16 N -0.89 -26.12 11.35 55.43 0.63 -25.49 16 17 Si 0.89 22.21 29.54 -169.99 -5.02 17.19 16 18 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 21 C 0.07 1.47 3.19 -3.83 -0.01 1.45 16 22 C 0.46 7.29 6.45 -86.74 -0.56 6.73 16 23 S -0.57 -11.16 27.12 -107.50 -2.92 -14.07 16 24 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.11 1.08 7.64 -51.93 -0.40 0.68 16 27 H 0.24 0.76 8.06 -52.49 -0.42 0.33 16 28 H 0.13 1.94 7.69 -51.93 -0.40 1.54 16 29 H 0.11 1.34 8.06 -51.93 -0.42 0.93 16 30 H 0.06 0.94 8.06 -51.93 -0.42 0.52 16 31 H 0.03 0.53 7.22 -51.93 -0.37 0.16 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 34 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.09 2.51 6.15 -51.93 -0.32 2.19 16 36 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 37 H 0.02 0.44 6.51 -51.92 -0.34 0.11 16 38 H 0.09 2.14 6.83 -51.93 -0.35 1.79 16 LS Contribution 315.08 15.07 4.75 4.75 Total: -1.00 -34.88 315.08 -11.83 -46.71 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -5.52 Total: -1.22 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -2.36 Total: -1.62 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: -0.77 Total: -51.74 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Atomic # 16 Polarization: -11.16 SS G_CDS: -2.92 Total: -14.07 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -34.88 -11.83 -46.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853526567.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.624 kcal (2) G-P(sol) polarization free energy of solvation -34.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds