Wall clock time and date at job start Tue Mar 31 2020 06:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47100 * 2 1 4 4 C 1.53002 * 109.47159 * 119.99746 * 2 1 3 5 5 N 1.46506 * 109.46777 * 65.00099 * 4 2 1 6 6 C 1.46502 * 119.99804 * 264.75757 * 5 4 2 7 7 C 1.50702 * 109.46902 * 264.59789 * 6 5 4 8 8 H 1.07999 * 119.99810 * 0.02562 * 7 6 5 9 9 C 1.37880 * 120.00010 * 180.02562 * 7 6 5 10 10 N 1.31510 * 119.99765 * 359.97438 * 9 7 6 11 11 Si 1.86792 * 120.00027 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47263 * 359.97438 * 11 9 7 13 13 H 1.48508 * 109.46997 * 119.99983 * 11 9 7 14 14 H 1.48500 * 109.47228 * 239.99725 * 11 9 7 15 15 C 1.34773 * 120.00125 * 84.75365 * 5 4 2 16 16 O 1.21500 * 120.00115 * 4.62615 * 15 5 4 17 17 C 1.48334 * 120.00223 * 184.61777 * 15 5 4 18 18 C 1.42268 * 126.93949 * 174.44572 * 17 15 5 19 19 C 1.35316 * 103.92072 * 179.91158 * 18 17 15 20 20 C 1.50702 * 126.66169 * 180.11497 * 19 18 17 21 21 O 1.42893 * 109.47457 * 90.30823 * 20 19 18 22 22 O 1.34014 * 106.66728 * 0.34802 * 19 18 17 23 23 N 1.20898 * 111.84549 * 359.76384 * 22 19 18 24 24 H 1.09003 * 109.47043 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47274 * 300.00189 * 1 2 3 26 26 H 1.08997 * 109.47060 * 60.00248 * 1 2 3 27 27 H 1.08998 * 109.46972 * 240.00175 * 2 1 3 28 28 H 1.08999 * 109.47091 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.47394 * 300.00100 * 3 2 1 30 30 H 1.09006 * 109.47407 * 60.00111 * 3 2 1 31 31 H 1.08992 * 109.47267 * 305.00529 * 4 2 1 32 32 H 1.08997 * 109.47375 * 184.99509 * 4 2 1 33 33 H 1.08994 * 109.47698 * 24.59882 * 6 5 4 34 34 H 1.09004 * 109.47073 * 144.60488 * 6 5 4 35 35 H 0.97003 * 120.00180 * 180.02562 * 10 9 7 36 36 H 1.08004 * 128.03714 * 0.02562 * 18 17 15 37 37 H 1.09007 * 109.46673 * 210.30814 * 20 19 18 38 38 H 1.09000 * 109.47202 * 330.30436 * 20 19 18 39 39 H 0.96699 * 113.99974 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 7 1.6525 -2.1328 1.1906 6 6 0.4309 -2.5855 1.8608 7 6 0.7758 -3.1179 3.2278 8 1 1.8022 -3.1186 3.5639 9 6 -0.2190 -3.6041 4.0494 10 7 -1.4688 -3.6028 3.6404 11 14 0.2084 -4.2634 5.7441 12 1 1.6731 -4.1538 5.9629 13 1 -0.5075 -3.4731 6.7777 14 1 -0.2006 -5.6878 5.8388 15 6 2.4196 -3.0150 0.5200 16 8 3.4749 -2.6572 0.0356 17 6 1.9757 -4.4227 0.3734 18 6 2.6075 -5.4433 -0.3904 19 6 1.8229 -6.5285 -0.1958 20 6 2.0293 -7.9038 -0.7762 21 8 2.8276 -8.6829 0.1169 22 8 0.8238 -6.1411 0.6090 23 7 0.9197 -4.9757 0.9163 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6054 -0.2618 2.1369 32 1 3.1263 -0.6444 1.2952 33 1 -0.2603 -1.7487 1.9606 34 1 -0.0362 -3.3742 1.2710 35 1 -2.1688 -3.9445 4.2185 36 1 3.5058 -5.3696 -0.9855 37 1 1.0627 -8.3880 -0.9159 38 1 2.5361 -7.8202 -1.7376 39 1 3.0008 -9.5823 -0.1932 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865027471.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:39 Heat of formation + Delta-G solvation = -19.179777 kcal Electronic energy + Delta-G solvation = -22989.821511 eV Core-core repulsion = 19515.489510 eV Total energy + Delta-G solvation = -3474.332002 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.49978 -39.17106 -37.05975 -36.13190 -34.18775 -33.26279 -32.26398 -31.79836 -27.61990 -26.81471 -26.47976 -26.18335 -23.60886 -22.73226 -21.75244 -20.04196 -18.41790 -17.91011 -17.05571 -16.78611 -16.46177 -16.06773 -15.56377 -14.83680 -14.54120 -14.44148 -14.41742 -13.88175 -13.30202 -13.16485 -12.86223 -12.45463 -12.21119 -12.03402 -12.00236 -11.72026 -11.38699 -11.01374 -10.93694 -10.88622 -10.57324 -10.43379 -10.26508 -10.17843 -9.91769 -9.86588 -9.64733 -9.41774 -9.17995 -8.40043 -7.73189 -6.05412 -4.09189 1.71936 2.09566 3.28418 3.29154 3.36974 3.41498 3.69798 3.88655 4.40988 4.43839 4.66190 4.82817 5.05727 5.17547 5.27684 5.28540 5.30126 5.42925 5.47694 5.70160 5.79452 5.88088 5.96447 5.99978 6.15812 6.22720 6.25247 6.34617 6.39956 6.59539 6.71909 6.82285 7.39392 7.41780 7.58056 7.86623 8.18875 8.22665 8.61428 8.88236 8.96924 9.55388 11.02370 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.010838 B = 0.007752 C = 0.005064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2582.860202 B = 3610.956372 C = 5527.989185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 C -0.141 4.141 4 C 0.125 3.875 5 N -0.576 5.576 6 C 0.225 3.775 7 C -0.525 4.525 8 H 0.054 0.946 9 C 0.071 3.929 10 N -0.886 5.886 11 Si 0.890 3.110 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.282 1.282 15 C 0.595 3.405 16 O -0.563 6.563 17 C -0.035 4.035 18 C -0.160 4.160 19 C -0.071 4.071 20 C 0.166 3.834 21 O -0.564 6.564 22 O 0.128 5.872 23 N -0.253 5.253 24 H 0.062 0.938 25 H 0.055 0.945 26 H 0.046 0.954 27 H 0.069 0.931 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.040 0.960 34 H 0.064 0.936 35 H 0.262 0.738 36 H 0.173 0.827 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.126 -3.329 -10.488 11.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.131 4.131 3 C -0.199 4.199 4 C 0.002 3.998 5 N -0.305 5.305 6 C 0.105 3.895 7 C -0.564 4.564 8 H 0.073 0.927 9 C -0.132 4.132 10 N -0.525 5.525 11 Si 0.718 3.282 12 H -0.199 1.199 13 H -0.209 1.209 14 H -0.208 1.208 15 C 0.381 3.619 16 O -0.442 6.442 17 C -0.194 4.194 18 C -0.182 4.182 19 C -0.133 4.133 20 C 0.087 3.913 21 O -0.371 6.371 22 O 0.047 5.953 23 N 0.051 4.949 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.065 0.935 27 H 0.087 0.913 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.058 0.942 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.191 0.809 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 3.499 -2.075 -9.494 10.329 hybrid contribution 0.753 -1.015 0.358 1.314 sum 4.252 -3.091 -9.136 10.541 Atomic orbital electron populations 1.21874 0.94923 1.02508 1.00980 1.21496 0.96416 0.95966 0.99217 1.21742 1.00842 0.95769 1.01503 1.21446 1.00223 0.80624 0.97524 1.48169 1.26240 1.07014 1.49113 1.19946 0.80331 0.96470 0.92724 1.21357 0.93939 1.41567 0.99536 0.92729 1.24806 0.94813 0.95367 0.98171 1.69922 0.99597 1.46158 1.36798 0.86564 0.78564 0.78831 0.84248 1.19899 1.20943 1.20807 1.16897 0.83580 0.82477 0.78950 1.90672 1.23149 1.78805 1.51624 1.23436 0.95764 0.98096 1.02101 1.22331 1.01862 0.90672 1.03359 1.23893 0.92596 0.97444 0.99407 1.20169 0.95773 0.84657 0.90690 1.86604 1.73296 1.28704 1.48455 1.84971 1.41123 1.21487 1.47761 1.74979 1.17210 0.90060 1.12691 0.91943 0.92570 0.93532 0.91295 0.92749 0.92896 0.92630 0.89999 0.90991 0.94248 0.91910 0.92835 0.80927 0.91093 0.90285 0.76670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 8.35 37.16 0.31 -2.04 16 2 C -0.11 -1.81 3.09 -90.62 -0.28 -2.09 16 3 C -0.14 -1.84 9.19 37.16 0.34 -1.50 16 4 C 0.13 2.38 4.81 -4.04 -0.02 2.36 16 5 N -0.58 -12.93 2.21 -175.99 -0.39 -13.32 16 6 C 0.22 5.64 3.69 -5.19 -0.02 5.62 16 7 C -0.53 -14.54 8.67 -34.44 -0.30 -14.84 16 8 H 0.05 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.07 1.99 5.46 -17.82 -0.10 1.89 16 10 N -0.89 -25.36 13.29 55.43 0.74 -24.63 16 11 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 12 H -0.27 -6.80 7.11 56.52 0.40 -6.39 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 15 C 0.59 13.62 7.61 -12.11 -0.09 13.53 16 16 O -0.56 -13.22 16.59 5.37 0.09 -13.13 16 17 C -0.04 -0.77 6.88 -82.53 -0.57 -1.34 16 18 C -0.16 -2.80 10.93 -39.08 -0.43 -3.23 16 19 C -0.07 -1.13 7.10 -35.35 -0.25 -1.38 16 20 C 0.17 1.71 7.60 36.01 0.27 1.99 16 21 O -0.56 -6.31 13.64 -35.23 -0.48 -6.79 16 22 O 0.13 2.54 11.18 17.25 0.19 2.73 16 23 N -0.25 -5.79 8.13 33.29 0.27 -5.52 16 24 H 0.06 1.15 6.39 -51.93 -0.33 0.82 16 25 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 1.54 8.03 -51.93 -0.42 1.12 16 32 H 0.07 1.37 7.52 -51.93 -0.39 0.98 16 33 H 0.04 1.01 6.82 -51.93 -0.35 0.66 16 34 H 0.06 1.67 5.24 -51.93 -0.27 1.40 16 35 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 36 H 0.17 2.57 8.06 -52.48 -0.42 2.15 16 37 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.39 1.95 9.12 45.56 0.42 2.37 16 LS Contribution 331.71 15.07 5.00 5.00 Total: -1.00 -33.74 331.71 -5.43 -39.17 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -4.70 Total: 0.64 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: -1.13 Total: -1.03 kcal Atomic # 7 Polarization: -44.08 SS G_CDS: 0.62 Total: -43.47 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -0.20 Total: -17.19 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.74 -5.43 -39.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865027471.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.994 kcal (2) G-P(sol) polarization free energy of solvation -33.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds