Wall clock time and date at job start Tue Mar 31 2020 06:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47100 * 2 1 4 4 C 1.53002 * 109.47159 * 119.99746 * 2 1 3 5 5 N 1.46506 * 109.46777 * 65.00099 * 4 2 1 6 6 C 1.46502 * 119.99804 * 264.75757 * 5 4 2 7 7 C 1.50702 * 109.46902 * 264.59789 * 6 5 4 8 8 H 1.07999 * 119.99810 * 0.02562 * 7 6 5 9 9 C 1.37880 * 120.00010 * 180.02562 * 7 6 5 10 10 N 1.31510 * 119.99765 * 359.97438 * 9 7 6 11 11 Si 1.86792 * 120.00027 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47263 * 359.97438 * 11 9 7 13 13 H 1.48508 * 109.46997 * 119.99983 * 11 9 7 14 14 H 1.48500 * 109.47228 * 239.99725 * 11 9 7 15 15 C 1.34773 * 120.00125 * 84.75365 * 5 4 2 16 16 O 1.21500 * 120.00115 * 4.62615 * 15 5 4 17 17 C 1.48334 * 120.00223 * 184.61777 * 15 5 4 18 18 C 1.42268 * 126.93949 * 174.44572 * 17 15 5 19 19 C 1.35316 * 103.92072 * 179.91158 * 18 17 15 20 20 C 1.50702 * 126.66169 * 180.11497 * 19 18 17 21 21 O 1.42893 * 109.47457 * 90.30823 * 20 19 18 22 22 O 1.34014 * 106.66728 * 0.34802 * 19 18 17 23 23 N 1.20898 * 111.84549 * 359.76384 * 22 19 18 24 24 H 1.09003 * 109.47043 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.47274 * 300.00189 * 1 2 3 26 26 H 1.08997 * 109.47060 * 60.00248 * 1 2 3 27 27 H 1.08998 * 109.46972 * 240.00175 * 2 1 3 28 28 H 1.08999 * 109.47091 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.47394 * 300.00100 * 3 2 1 30 30 H 1.09006 * 109.47407 * 60.00111 * 3 2 1 31 31 H 1.08992 * 109.47267 * 305.00529 * 4 2 1 32 32 H 1.08997 * 109.47375 * 184.99509 * 4 2 1 33 33 H 1.08994 * 109.47698 * 24.59882 * 6 5 4 34 34 H 1.09004 * 109.47073 * 144.60488 * 6 5 4 35 35 H 0.97003 * 120.00180 * 180.02562 * 10 9 7 36 36 H 1.08004 * 128.03714 * 0.02562 * 18 17 15 37 37 H 1.09007 * 109.46673 * 210.30814 * 20 19 18 38 38 H 1.09000 * 109.47202 * 330.30436 * 20 19 18 39 39 H 0.96699 * 113.99974 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 7 1.6525 -2.1328 1.1906 6 6 0.4309 -2.5855 1.8608 7 6 0.7758 -3.1179 3.2278 8 1 1.8022 -3.1186 3.5639 9 6 -0.2190 -3.6041 4.0494 10 7 -1.4688 -3.6028 3.6404 11 14 0.2084 -4.2634 5.7441 12 1 1.6731 -4.1538 5.9629 13 1 -0.5075 -3.4731 6.7777 14 1 -0.2006 -5.6878 5.8388 15 6 2.4196 -3.0150 0.5200 16 8 3.4749 -2.6572 0.0356 17 6 1.9757 -4.4227 0.3734 18 6 2.6075 -5.4433 -0.3904 19 6 1.8229 -6.5285 -0.1958 20 6 2.0293 -7.9038 -0.7762 21 8 2.8276 -8.6829 0.1169 22 8 0.8238 -6.1411 0.6090 23 7 0.9197 -4.9757 0.9163 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6054 -0.2618 2.1369 32 1 3.1263 -0.6444 1.2952 33 1 -0.2603 -1.7487 1.9606 34 1 -0.0362 -3.3742 1.2710 35 1 -2.1688 -3.9445 4.2185 36 1 3.5058 -5.3696 -0.9855 37 1 1.0627 -8.3880 -0.9159 38 1 2.5361 -7.8202 -1.7376 39 1 3.0008 -9.5823 -0.1932 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865027471.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:38 Heat of formation + Delta-G solvation = -43.167148 kcal Electronic energy + Delta-G solvation = -22990.861682 eV Core-core repulsion = 19515.489510 eV Total energy + Delta-G solvation = -3475.372172 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -46.04265 -40.90963 -37.89527 -37.71627 -35.89779 -34.80701 -34.19146 -33.18160 -29.53642 -28.04007 -27.86046 -27.52859 -25.38557 -24.48708 -23.28417 -21.41799 -19.96005 -19.10071 -18.75124 -18.31482 -18.01201 -17.77808 -17.17545 -16.43290 -16.13409 -15.91467 -15.64610 -15.23020 -14.75658 -14.55276 -14.40225 -14.20140 -13.79754 -13.67046 -13.12219 -13.00970 -12.96551 -12.80756 -12.66548 -12.33029 -12.18991 -12.04791 -11.81867 -11.62694 -11.58956 -11.40694 -11.23097 -10.98539 -10.64878 -10.47206 -9.55876 -8.19076 -6.29776 0.25346 0.63288 1.32719 1.35509 1.45321 1.94916 2.11455 2.23487 2.39173 3.08104 3.12671 3.40165 3.79546 3.90490 3.96437 4.02355 4.11795 4.15559 4.22434 4.52113 4.57468 4.62772 4.68852 4.75300 4.83493 4.88925 4.94692 4.97175 5.02424 5.16896 5.31072 5.39337 5.40728 5.65788 5.77662 6.08247 6.36276 6.74506 6.96178 7.01885 7.29136 7.38306 8.87886 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.010838 B = 0.007752 C = 0.005064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2582.860202 B = 3610.956372 C = 5527.989185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.103 4.103 3 C -0.133 4.133 4 C 0.119 3.881 5 N -0.580 5.580 6 C 0.244 3.756 7 C -0.534 4.534 8 H 0.035 0.965 9 C 0.031 3.969 10 N -0.910 5.910 11 Si 0.946 3.054 12 H -0.279 1.279 13 H -0.270 1.270 14 H -0.278 1.278 15 C 0.587 3.413 16 O -0.575 6.575 17 C -0.065 4.065 18 C -0.167 4.167 19 C -0.053 4.053 20 C 0.167 3.833 21 O -0.591 6.591 22 O 0.121 5.879 23 N -0.297 5.297 24 H 0.031 0.969 25 H 0.056 0.944 26 H 0.071 0.929 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.028 0.972 34 H 0.051 0.949 35 H 0.266 0.734 36 H 0.198 0.802 37 H 0.097 0.903 38 H 0.120 0.880 39 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.661 -4.082 -11.258 12.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.123 4.123 3 C -0.191 4.191 4 C -0.003 4.003 5 N -0.309 5.309 6 C 0.123 3.877 7 C -0.573 4.573 8 H 0.053 0.947 9 C -0.169 4.169 10 N -0.549 5.549 11 Si 0.771 3.229 12 H -0.204 1.204 13 H -0.196 1.196 14 H -0.204 1.204 15 C 0.374 3.626 16 O -0.456 6.456 17 C -0.222 4.222 18 C -0.189 4.189 19 C -0.116 4.116 20 C 0.089 3.911 21 O -0.403 6.403 22 O 0.040 5.960 23 N 0.006 4.994 24 H 0.050 0.950 25 H 0.075 0.925 26 H 0.090 0.910 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.046 0.954 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.215 0.785 37 H 0.115 0.885 38 H 0.138 0.862 39 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 4.038 -2.829 -10.270 11.392 hybrid contribution 0.623 -0.880 0.535 1.203 sum 4.661 -3.708 -9.735 11.413 Atomic orbital electron populations 1.21815 0.94804 1.00860 1.02266 1.21423 0.96394 0.97635 0.96845 1.21696 1.01128 0.93318 1.02969 1.21674 1.00151 0.79348 0.99157 1.48183 1.25471 1.08390 1.48815 1.19527 0.81007 0.95428 0.91692 1.21434 0.92992 1.42034 1.00833 0.94669 1.25442 0.94738 0.95509 1.01260 1.69999 1.00231 1.46696 1.37977 0.85706 0.77975 0.78467 0.80705 1.20427 1.19562 1.20389 1.17172 0.83454 0.83219 0.78727 1.90635 1.23459 1.79301 1.52253 1.23636 0.96716 0.98286 1.03608 1.22650 1.02884 0.89860 1.03528 1.24965 0.90204 0.99684 0.96717 1.20531 0.97789 0.81656 0.91102 1.86512 1.73433 1.30813 1.49495 1.84891 1.42387 1.20469 1.48279 1.74952 1.18456 0.91429 1.14553 0.95025 0.92479 0.90976 0.92673 0.92293 0.90861 0.91717 0.90138 0.91214 0.95399 0.93188 0.92499 0.78502 0.88539 0.86243 0.73508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.51 8.35 71.98 0.60 -3.91 16 2 C -0.10 -3.34 3.09 -10.79 -0.03 -3.38 16 3 C -0.13 -3.25 9.19 71.98 0.66 -2.59 16 4 C 0.12 4.63 4.81 86.38 0.42 5.05 16 5 N -0.58 -26.98 2.21 -829.00 -1.83 -28.81 16 6 C 0.24 12.74 3.69 85.63 0.32 13.06 16 7 C -0.53 -30.44 8.67 25.60 0.22 -30.22 16 8 H 0.03 2.10 7.81 -2.91 -0.02 2.07 16 9 C 0.03 1.77 5.46 84.66 0.46 2.23 16 10 N -0.91 -52.78 13.29 21.45 0.28 -52.50 16 11 Si 0.95 45.25 29.54 68.60 2.03 47.27 16 12 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 13 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 14 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 15 C 0.59 27.71 7.61 86.93 0.66 28.37 16 16 O -0.58 -27.51 16.59 -3.71 -0.06 -27.58 16 17 C -0.07 -2.90 6.88 42.96 0.30 -2.60 16 18 C -0.17 -5.72 10.93 22.60 0.25 -5.47 16 19 C -0.05 -1.61 7.10 25.01 0.18 -1.44 16 20 C 0.17 2.87 7.60 71.24 0.54 3.41 16 21 O -0.59 -11.38 13.64 -148.98 -2.03 -13.41 16 22 O 0.12 4.83 11.18 71.91 0.80 5.64 16 23 N -0.30 -13.99 8.13 -49.52 -0.40 -14.39 16 24 H 0.03 1.19 6.39 -2.39 -0.02 1.18 16 25 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 31 H 0.08 3.11 8.03 -2.39 -0.02 3.09 16 32 H 0.07 2.72 7.52 -2.39 -0.02 2.70 16 33 H 0.03 1.50 6.82 -2.39 -0.02 1.49 16 34 H 0.05 2.80 5.24 -2.39 -0.01 2.79 16 35 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 36 H 0.20 5.55 8.06 -2.91 -0.02 5.52 16 37 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 38 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.41 2.72 9.12 -74.06 -0.68 2.04 16 Total: -1.00 -74.87 331.71 3.75 -71.13 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: 0.39 Total: 10.14 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: 4.57 Total: 2.51 kcal Atomic # 7 Polarization: -93.75 SS G_CDS: -1.95 Total: -95.70 kcal Atomic # 8 Polarization: -34.06 SS G_CDS: -1.29 Total: -35.35 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Total: -74.87 3.75 -71.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865027471.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.960 kcal (2) G-P(sol) polarization free energy of solvation -74.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds