Wall clock time and date at job start Tue Mar 31 2020 06:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50706 * 109.47288 * 2 1 4 4 C 1.39639 * 126.05777 * 125.25712 * 3 2 1 5 5 C 1.38494 * 105.35128 * 180.13629 * 4 3 2 6 6 C 1.47005 * 126.88995 * 179.89713 * 5 4 3 7 7 O 1.21543 * 120.00392 * 359.68533 * 6 5 4 8 8 O 1.34817 * 119.99592 * 179.68612 * 6 5 4 9 9 C 1.45206 * 116.99938 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.47091 * 179.97438 * 9 8 6 11 11 O 1.42905 * 109.46911 * 65.00251 * 10 9 8 12 12 C 1.42897 * 114.00040 * 179.97438 * 11 10 9 13 13 C 1.50695 * 109.47146 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00154 * 0.02562 * 13 12 11 15 15 C 1.37885 * 119.99853 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00071 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99974 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.47239 * 59.99071 * 17 15 13 19 19 H 1.48494 * 109.47219 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.46824 * 299.99580 * 17 15 13 21 21 N 1.36650 * 106.21000 * 359.63378 * 5 4 3 22 22 C 1.46503 * 125.19328 * 180.23566 * 21 5 4 23 23 N 1.28440 * 109.60967 * 0.24149 * 21 5 4 24 24 H 1.08996 * 109.47139 * 59.99655 * 1 2 3 25 25 H 1.08995 * 109.47039 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46955 * 300.00206 * 1 2 3 27 27 H 1.08995 * 109.47101 * 240.00418 * 2 1 3 28 28 H 1.08999 * 109.47410 * 119.99894 * 2 1 3 29 29 H 1.07994 * 127.32724 * 0.03322 * 4 3 2 30 30 H 1.09001 * 109.47157 * 299.99785 * 9 8 6 31 31 H 1.09004 * 109.47122 * 59.99918 * 9 8 6 32 32 H 1.09003 * 109.47073 * 184.99607 * 10 9 8 33 33 H 1.08993 * 109.47403 * 305.00248 * 10 9 8 34 34 H 1.08999 * 109.47446 * 300.00155 * 12 11 10 35 35 H 1.09005 * 109.47036 * 60.00044 * 12 11 10 36 36 H 0.96998 * 120.00311 * 180.02562 * 16 15 13 37 37 H 1.09002 * 109.46714 * 90.00360 * 22 21 5 38 38 H 1.08994 * 109.47570 * 210.00208 * 22 21 5 39 39 H 1.09004 * 109.47457 * 330.00822 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.9208 1.9785 0.9218 5 6 3.0837 3.2950 0.5238 6 6 3.9235 4.3145 1.1690 7 8 4.5628 4.0344 2.1641 8 8 3.9846 5.5601 0.6570 9 6 4.8337 6.5153 1.3463 10 6 4.7759 7.8630 0.6242 11 8 3.4536 8.3968 0.7170 12 6 3.2907 9.6614 0.0718 13 6 1.8663 10.1268 0.2310 14 1 1.1565 9.5180 0.7713 15 6 1.4692 11.3299 -0.3131 16 7 2.3337 12.0715 -0.9705 17 14 -0.2963 11.9072 -0.1151 18 1 -0.6132 12.0444 1.3292 19 1 -0.4656 13.2212 -0.7856 20 1 -1.2135 10.9148 -0.7310 21 7 2.3117 3.4543 -0.5925 22 6 2.1818 4.6960 -1.3590 23 7 1.7174 2.3493 -0.8669 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.3814 1.4881 1.7665 30 1 4.4854 6.6371 2.3719 31 1 5.8608 6.1504 1.3522 32 1 5.4800 8.5540 1.0878 33 1 5.0393 7.7250 -0.4244 34 1 3.9639 10.3895 0.5242 35 1 3.5234 9.5610 -0.9884 36 1 2.0545 12.9181 -1.3529 37 1 2.9435 4.7233 -2.1383 38 1 1.1932 4.7394 -1.8158 39 1 2.3124 5.5494 -0.6935 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873479103.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:04 Heat of formation + Delta-G solvation = -66.087147 kcal Electronic energy + Delta-G solvation = -21691.441538 eV Core-core repulsion = 18215.075480 eV Total energy + Delta-G solvation = -3476.366058 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.69349 -40.13755 -37.17469 -36.16833 -34.99151 -32.84937 -31.92166 -31.29972 -30.01077 -27.12816 -26.94763 -24.37258 -23.57438 -22.48961 -21.98282 -21.19060 -19.90028 -17.75956 -17.03589 -16.85878 -16.46583 -16.11896 -15.67098 -15.29816 -14.75692 -14.51300 -14.36624 -14.25971 -13.91427 -13.62166 -13.11461 -13.02802 -12.83088 -12.38130 -12.20298 -12.05998 -11.70740 -11.51117 -11.45813 -11.08326 -10.96917 -10.86042 -10.75393 -10.54594 -10.50776 -10.12772 -9.30230 -9.22278 -9.00150 -8.96439 -8.30097 -6.18729 -4.21100 0.96095 2.30152 2.37902 2.57218 2.87253 3.27311 3.30621 3.34089 4.23845 4.25336 4.49559 4.63430 4.68152 5.02228 5.09307 5.13360 5.17958 5.19818 5.23400 5.31064 5.35222 5.48768 5.59886 5.67324 5.71071 5.75701 5.85650 5.91120 5.95770 6.05608 6.31011 6.35168 6.60881 6.96188 7.30753 7.59676 7.70332 7.93488 8.04372 8.42631 8.90880 9.44136 10.92608 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.018458 B = 0.003579 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.577659 B = 7821.792713 C = 8910.806372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.034 4.034 3 C 0.016 3.984 4 C -0.150 4.150 5 C -0.026 4.026 6 C 0.540 3.460 7 O -0.498 6.498 8 O -0.342 6.342 9 C 0.075 3.925 10 C 0.061 3.939 11 O -0.392 6.392 12 C 0.195 3.805 13 C -0.518 4.518 14 H 0.066 0.934 15 C 0.058 3.942 16 N -0.898 5.898 17 Si 0.908 3.092 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.274 1.274 21 N -0.256 5.256 22 C 0.078 3.922 23 N -0.262 5.262 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.165 0.835 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.051 0.949 34 H 0.006 0.994 35 H 0.007 0.993 36 H 0.265 0.735 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.172 -20.052 0.460 20.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.073 4.073 3 C -0.139 4.139 4 C -0.179 4.179 5 C -0.151 4.151 6 C 0.383 3.617 7 O -0.385 6.385 8 O -0.258 6.258 9 C 0.002 3.998 10 C -0.017 4.017 11 O -0.312 6.312 12 C 0.121 3.879 13 C -0.556 4.556 14 H 0.084 0.916 15 C -0.144 4.144 16 N -0.537 5.537 17 Si 0.735 3.265 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.200 1.200 21 N -0.045 5.045 22 C -0.061 4.061 23 N -0.098 5.098 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.096 0.904 28 H 0.100 0.900 29 H 0.183 0.817 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.024 0.976 35 H 0.025 0.975 36 H 0.075 0.925 37 H 0.106 0.894 38 H 0.117 0.883 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.626 -19.617 -0.263 19.686 hybrid contribution 0.020 0.691 0.656 0.953 sum 1.646 -18.926 0.393 19.001 Atomic orbital electron populations 1.21723 0.94526 1.01630 1.02647 1.19860 0.96239 0.88179 1.03039 1.21991 1.00462 0.96939 0.94484 1.22026 1.02056 0.91381 1.02421 1.20679 1.03833 0.95569 0.95054 1.19655 0.78979 0.81319 0.81745 1.90871 1.42376 1.80926 1.24308 1.86652 1.64033 1.20067 1.55049 1.23316 0.93124 0.86231 0.97151 1.22342 0.88755 0.91245 0.99325 1.87914 1.25559 1.39395 1.78321 1.20235 0.97558 0.78536 0.91548 1.20994 0.94831 1.04513 1.35280 0.91576 1.24941 0.98408 0.96104 0.94914 1.69940 1.34704 1.13158 1.35878 0.86392 0.83734 0.77803 0.78543 1.19975 1.21101 1.19963 1.45901 1.29822 1.09736 1.19087 1.22549 1.04915 0.81218 0.97422 1.73088 1.18961 0.92644 1.25094 0.92040 0.92310 0.92633 0.90438 0.90004 0.81749 0.90114 0.90059 0.91659 0.93121 0.97576 0.97488 0.92496 0.89365 0.88261 0.86228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.88 37.16 0.37 -0.83 16 2 C -0.03 -0.29 6.51 -27.88 -0.18 -0.47 16 3 C 0.02 0.20 6.49 -82.48 -0.54 -0.34 16 4 C -0.15 -1.89 10.77 -38.96 -0.42 -2.31 16 5 C -0.03 -0.37 6.96 -82.07 -0.57 -0.94 16 6 C 0.54 8.37 7.93 34.28 0.27 8.65 16 7 O -0.50 -8.41 16.71 -19.30 -0.32 -8.73 16 8 O -0.34 -5.35 7.66 -43.59 -0.33 -5.68 16 9 C 0.08 1.11 5.86 37.16 0.22 1.33 16 10 C 0.06 1.03 6.33 37.16 0.24 1.26 16 11 O -0.39 -8.91 10.30 -38.79 -0.40 -9.31 16 12 C 0.20 5.10 5.69 36.00 0.20 5.31 16 13 C -0.52 -14.77 9.43 -34.44 -0.32 -15.10 16 14 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -26.15 13.29 55.43 0.74 -25.41 16 17 Si 0.91 21.36 29.54 -169.99 -5.02 16.34 16 18 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 21 N -0.26 -3.54 3.75 -63.89 -0.24 -3.78 16 22 C 0.08 0.94 10.81 59.85 0.65 1.59 16 23 N -0.26 -3.58 11.87 33.63 0.40 -3.18 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.08 0.54 8.12 -51.93 -0.42 0.11 16 29 H 0.16 1.74 8.06 -52.49 -0.42 1.32 16 30 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 31 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 35 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 36 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 37 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.12 1.64 6.15 -51.93 -0.32 1.33 16 LS Contribution 342.69 15.07 5.16 5.16 Total: -1.00 -32.55 342.69 -5.98 -38.53 By element: Atomic # 1 Polarization: 2.17 SS G_CDS: -5.78 Total: -3.62 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -0.19 Total: -0.33 kcal Atomic # 7 Polarization: -33.27 SS G_CDS: 0.90 Total: -32.37 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -1.06 Total: -23.72 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.55 -5.98 -38.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873479103.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.553 kcal (2) G-P(sol) polarization free energy of solvation -32.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds