Wall clock time and date at job start Tue Mar 31 2020 05:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52997 * 109.47164 * 239.99996 * 2 1 3 5 5 C 1.50692 * 109.47279 * 65.00126 * 4 2 1 6 6 H 1.08008 * 120.00068 * 359.97438 * 5 4 2 7 7 C 1.37883 * 120.00230 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99729 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99917 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46985 * 60.00493 * 9 7 5 11 11 H 1.48503 * 109.46610 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47354 * 300.00099 * 9 7 5 13 13 C 1.52999 * 109.46626 * 119.99699 * 2 1 3 14 14 N 1.46897 * 109.47488 * 294.99728 * 13 2 1 15 15 C 1.46904 * 110.99957 * 179.97438 * 14 13 2 16 16 C 1.53003 * 109.47206 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.47256 * 180.02562 * 16 15 14 18 18 C 1.38709 * 120.40251 * 90.00029 * 17 16 15 19 19 C 1.38570 * 118.43419 * 179.97438 * 18 17 16 20 20 C 1.38392 * 119.14831 * 0.02562 * 19 18 17 21 21 Cl 1.73602 * 119.63176 * 180.02562 * 20 19 18 22 22 N 1.31947 * 120.73306 * 0.02562 * 20 19 18 23 23 C 1.31904 * 121.70776 * 359.72423 * 22 20 19 24 24 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 25 25 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 26 26 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46992 * 185.00551 * 4 2 1 28 28 H 1.08998 * 109.47097 * 304.99739 * 4 2 1 29 29 H 0.96996 * 119.99975 * 180.02562 * 8 7 5 30 30 H 1.09002 * 109.47016 * 55.00506 * 13 2 1 31 31 H 1.09000 * 109.46709 * 175.00070 * 13 2 1 32 32 H 1.00896 * 111.00234 * 303.95753 * 14 13 2 33 33 H 1.08998 * 109.47529 * 300.00301 * 15 14 13 34 34 H 1.09007 * 109.46917 * 60.00488 * 15 14 13 35 35 H 1.08995 * 109.47263 * 300.00953 * 16 15 14 36 36 H 1.09007 * 109.46870 * 60.00354 * 16 15 14 37 37 H 1.08002 * 120.78351 * 359.96036 * 18 17 16 38 38 H 1.07991 * 120.42035 * 179.97438 * 19 18 17 39 39 H 1.08004 * 119.61125 * 180.28545 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6415 0.0570 -2.4765 6 1 1.0801 0.9742 -2.3757 7 6 1.9934 -0.4017 -3.7283 8 7 2.6765 -1.5188 -3.8511 9 14 1.4986 0.5627 -5.2496 10 1 2.0898 1.9235 -5.1870 11 1 1.9949 -0.1367 -6.4620 12 1 0.0187 0.6682 -5.3092 13 6 2.0399 -0.7212 1.2493 14 7 1.6514 0.0375 2.4457 15 6 2.1246 -0.6271 3.6673 16 6 1.7013 0.1904 4.8894 17 6 2.1873 -0.4911 6.1425 18 6 3.4358 -0.1896 6.6663 19 6 3.8416 -0.8401 7.8206 20 6 2.9937 -1.7628 8.4080 21 17 3.4892 -2.5845 9.8547 22 7 1.8130 -2.0249 7.8805 23 6 1.3933 -1.4208 6.7856 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1264 -0.7995 -1.2055 28 1 1.6055 -1.7198 -1.2951 29 1 2.9245 -1.8413 -4.7316 30 1 1.6053 -1.7198 1.2952 31 1 3.1263 -0.7994 1.2057 32 1 1.9881 0.9873 2.3967 33 1 1.6902 -1.6248 3.7298 34 1 3.2116 -0.7051 3.6407 35 1 2.1353 1.1883 4.8271 36 1 0.6143 0.2679 4.9158 37 1 4.0767 0.5348 6.1857 38 1 4.8075 -0.6302 8.2558 39 1 0.4185 -1.6579 6.3856 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877083760.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:23 Heat of formation + Delta-G solvation = 0.239125 kcal Electronic energy + Delta-G solvation = -18565.858993 eV Core-core repulsion = 15533.078223 eV Total energy + Delta-G solvation = -3032.780770 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.119 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.68359 -37.33603 -36.91554 -35.02311 -33.27658 -32.44914 -31.64174 -28.58921 -26.76093 -25.21252 -24.19134 -23.51878 -22.15132 -21.60434 -19.07125 -17.79960 -17.18324 -16.36136 -15.82859 -15.50163 -14.94071 -14.68727 -14.42825 -14.14713 -13.93378 -13.67261 -13.47725 -12.78227 -12.52378 -12.18594 -11.95809 -11.83231 -11.65150 -11.51699 -11.45506 -11.19053 -10.85365 -10.75079 -10.33421 -10.29956 -10.25225 -9.96733 -9.71856 -9.24227 -9.12510 -8.95925 -8.33614 -8.21228 -5.98403 -3.99717 0.50852 0.76499 1.46082 3.21948 3.33691 3.38197 3.40524 4.04164 4.16431 4.44889 4.45082 4.48149 4.58263 4.83014 4.96254 5.06292 5.23322 5.37246 5.42126 5.47399 5.61209 5.67522 5.82212 5.88148 5.95600 6.12829 6.13284 6.38670 6.51828 6.65888 6.97971 7.15427 7.17380 7.29822 7.32711 7.57450 7.68055 7.83745 8.01537 8.45322 9.06452 9.63605 11.13087 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.049086 B = 0.002158 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.296122 B =12970.938518 C =13143.340689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.082 4.082 3 H 0.053 0.947 4 C 0.027 3.973 5 C -0.513 4.513 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.891 3.109 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.064 3.936 14 N -0.688 5.688 15 C 0.063 3.937 16 C -0.076 4.076 17 C -0.123 4.123 18 C -0.061 4.061 19 C -0.152 4.152 20 C 0.166 3.834 21 Cl -0.036 7.036 22 N -0.477 5.477 23 C 0.123 3.877 24 H 0.042 0.958 25 H 0.053 0.947 26 H 0.039 0.961 27 H 0.012 0.988 28 H 0.016 0.984 29 H 0.260 0.740 30 H 0.067 0.933 31 H 0.024 0.976 32 H 0.337 0.663 33 H 0.072 0.928 34 H 0.027 0.973 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.560 2.487 24.846 25.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.101 4.101 3 H 0.072 0.928 4 C -0.011 4.011 5 C -0.552 4.552 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.202 1.202 13 C -0.064 4.064 14 N -0.318 5.318 15 C -0.066 4.066 16 C -0.114 4.114 17 C -0.125 4.125 18 C -0.087 4.087 19 C -0.172 4.172 20 C 0.002 3.998 21 Cl -0.008 7.008 22 N -0.187 5.187 23 C -0.034 4.034 24 H 0.061 0.939 25 H 0.072 0.928 26 H 0.058 0.942 27 H 0.030 0.970 28 H 0.034 0.966 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.043 0.957 32 H 0.155 0.845 33 H 0.090 0.910 34 H 0.045 0.955 35 H 0.095 0.905 36 H 0.108 0.892 37 H 0.163 0.837 38 H 0.163 0.837 39 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 0.520 1.376 25.285 25.328 hybrid contribution 1.409 1.058 -1.198 2.130 sum 1.929 2.435 24.088 24.287 Atomic orbital electron populations 1.21593 0.95677 1.00604 1.00164 1.21204 0.96044 0.98893 0.94000 0.92826 1.19118 0.95889 0.95600 0.90445 1.21195 1.34676 1.08317 0.90984 0.92606 1.25032 0.95345 0.95111 0.99123 1.69954 1.39005 1.21208 1.23506 0.86679 0.78917 0.80066 0.82461 1.20325 1.21383 1.20247 1.22159 0.97201 0.97751 0.89337 1.60522 1.64040 1.05799 1.01481 1.21906 0.97329 0.98253 0.89149 1.20568 1.02702 0.98449 0.89727 1.21046 0.95093 0.98158 0.98225 1.21568 0.95365 0.97830 0.93936 1.21844 1.01122 0.97214 0.97063 1.21649 0.92094 0.94675 0.91380 1.98408 1.89431 1.78391 1.34559 1.67026 1.14601 1.25334 1.11731 1.22683 0.99808 0.91442 0.89448 0.93915 0.92762 0.94155 0.96968 0.96556 0.93031 0.91500 0.95745 0.84528 0.90955 0.95470 0.90492 0.89242 0.83713 0.83735 0.81540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.33 8.89 37.16 0.33 -2.00 16 2 C -0.08 -1.63 2.48 -90.62 -0.22 -1.86 16 3 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 4 C 0.03 0.68 4.45 -27.89 -0.12 0.56 16 5 C -0.51 -14.26 8.41 -34.44 -0.29 -14.55 16 6 H 0.06 1.51 7.06 -52.48 -0.37 1.13 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 9 Si 0.89 21.58 29.54 -169.99 -5.02 16.55 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 C 0.06 1.05 5.07 -3.83 -0.02 1.04 16 14 N -0.69 -8.94 5.95 -113.77 -0.68 -9.61 16 15 C 0.06 0.66 5.67 -3.82 -0.02 0.64 16 16 C -0.08 -0.60 5.63 -27.88 -0.16 -0.76 16 17 C -0.12 -1.01 5.15 -104.48 -0.54 -1.54 16 18 C -0.06 -0.45 9.86 -39.28 -0.39 -0.84 16 19 C -0.15 -1.19 9.88 -39.40 -0.39 -1.58 16 20 C 0.17 1.65 7.27 -17.45 -0.13 1.52 16 21 Cl -0.04 -0.33 29.11 -51.86 -1.51 -1.84 16 22 N -0.48 -5.26 10.34 -10.36 -0.11 -5.36 16 23 C 0.12 1.13 10.86 -17.55 -0.19 0.94 16 24 H 0.04 0.71 7.75 -51.93 -0.40 0.31 16 25 H 0.05 1.10 6.95 -51.93 -0.36 0.74 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.34 4.05 8.73 -39.29 -0.34 3.71 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.08 0.54 8.09 -51.93 -0.42 0.12 16 36 H 0.09 0.70 8.09 -51.93 -0.42 0.28 16 37 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 38 H 0.14 0.81 8.06 -52.49 -0.42 0.38 16 39 H 0.17 1.22 8.06 -52.48 -0.42 0.80 16 LS Contribution 342.92 15.07 5.17 5.17 Total: -1.00 -30.66 342.92 -9.75 -40.41 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -6.10 Total: -2.19 kcal Atomic # 6 Polarization: -14.73 SS G_CDS: -2.24 Total: -16.97 kcal Atomic # 7 Polarization: -41.08 SS G_CDS: -0.05 Total: -41.13 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -1.51 Total: -1.84 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.66 -9.75 -40.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877083760.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.645 kcal (2) G-P(sol) polarization free energy of solvation -30.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds