Wall clock time and date at job start Tue Mar 31 2020 05:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42904 * 114.00016 * 2 1 4 4 C 1.53001 * 109.47370 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47148 * 180.02562 * 4 3 2 6 6 O 1.45200 * 109.46730 * 180.02562 * 5 4 3 7 7 C 1.34756 * 116.99417 * 180.02562 * 6 5 4 8 8 O 1.21520 * 120.00292 * 359.97438 * 7 6 5 9 9 C 1.47291 * 119.99648 * 180.02562 * 7 6 5 10 10 C 1.41344 * 126.42578 * 0.03822 * 9 7 6 11 11 N 1.30427 * 108.01038 * 179.68626 * 10 9 7 12 12 N 1.39939 * 108.92113 * 0.44175 * 11 10 9 13 13 C 1.46491 * 125.74450 * 179.81281 * 12 11 10 14 14 C 1.50702 * 109.46957 * 269.69080 * 13 12 11 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 13 12 17 17 N 1.31514 * 119.99985 * 180.27663 * 16 14 13 18 18 Si 1.86800 * 119.99777 * 0.28166 * 16 14 13 19 19 H 1.48498 * 109.47109 * 89.99834 * 18 16 14 20 20 H 1.48507 * 109.46754 * 209.99574 * 18 16 14 21 21 H 1.48498 * 109.47278 * 329.99405 * 18 16 14 22 22 C 1.34222 * 108.50592 * 359.54733 * 12 11 10 23 23 C 1.50707 * 126.29232 * 180.23890 * 22 12 11 24 24 H 1.09003 * 109.47467 * 299.99528 * 1 2 3 25 25 H 1.09005 * 109.47597 * 59.99823 * 1 2 3 26 26 H 1.09003 * 109.47371 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46602 * 60.00060 * 3 2 1 28 28 H 1.09002 * 109.47169 * 300.00665 * 3 2 1 29 29 H 1.09001 * 109.46962 * 60.00068 * 4 3 2 30 30 H 1.08997 * 109.46707 * 300.00512 * 4 3 2 31 31 H 1.08996 * 109.46514 * 60.00096 * 5 4 3 32 32 H 1.08996 * 109.46848 * 300.00124 * 5 4 3 33 33 H 1.08000 * 125.99491 * 359.96182 * 10 9 7 34 34 H 1.09004 * 109.47166 * 149.69346 * 13 12 11 35 35 H 1.08994 * 109.47507 * 29.69052 * 13 12 11 36 36 H 0.96996 * 119.99730 * 180.02562 * 17 16 14 37 37 H 1.09001 * 109.46792 * 89.99868 * 23 22 12 38 38 H 1.08995 * 109.47272 * 209.99987 * 23 22 12 39 39 H 1.08999 * 109.47175 * 330.00300 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1577 2.5825 0.0013 6 8 5.6051 2.4678 0.0013 7 6 6.3097 3.6165 0.0024 8 8 5.7304 4.6847 0.0028 9 6 7.7821 3.5772 0.0019 10 6 8.5908 2.4180 -0.0005 11 7 9.8388 2.7968 -0.0069 12 7 9.8885 4.1953 0.0012 13 6 11.1071 5.0083 0.0014 14 6 11.5260 5.2850 1.4223 15 1 10.9431 4.8940 2.2431 16 6 12.6571 6.0322 1.6745 17 7 13.0258 6.2691 2.9145 18 14 13.6658 6.7080 0.2549 19 1 13.1603 8.0545 -0.1146 20 1 15.0900 6.8088 0.6635 21 1 13.5490 5.7979 -0.9127 22 6 8.6316 4.6663 0.0028 23 6 8.2225 6.1168 0.0057 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6885 1.8464 0.8901 28 1 1.6884 1.8465 -0.8899 29 1 3.8574 0.6437 -0.8891 30 1 3.8566 0.6439 0.8908 31 1 3.8356 3.1231 0.8913 32 1 3.8364 3.1236 -0.8887 33 1 8.2372 1.3975 -0.0016 34 1 10.9150 5.9511 -0.5109 35 1 11.9029 4.4704 -0.5138 36 1 13.8212 6.7950 3.0919 37 1 8.1233 6.4683 -1.0213 38 1 7.2677 6.2239 0.5203 39 1 8.9808 6.7071 0.5201 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892589430.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:59 Heat of formation + Delta-G solvation = -69.626566 kcal Electronic energy + Delta-G solvation = -21294.644798 eV Core-core repulsion = 17818.125260 eV Total energy + Delta-G solvation = -3476.519539 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.97455 -39.68055 -38.30514 -36.28356 -33.97533 -33.14491 -32.23150 -31.40608 -28.35843 -27.47999 -26.88855 -25.34375 -23.29332 -22.37871 -21.77870 -20.31725 -18.94994 -17.45200 -17.25518 -16.91069 -16.85667 -16.02574 -15.97935 -15.25453 -15.08815 -14.80384 -14.34139 -14.01811 -13.63927 -13.25886 -12.82463 -12.76294 -12.61417 -12.34939 -12.26635 -12.12773 -11.95034 -11.69901 -11.56245 -11.35913 -11.26105 -10.87947 -10.47906 -10.46167 -10.34744 -10.05639 -9.90660 -9.80677 -8.88289 -8.72401 -8.14463 -6.35955 -4.41349 1.84155 2.58384 2.65234 3.07282 3.13134 3.16332 3.24844 3.60365 3.61628 4.12913 4.59187 4.70634 4.82371 4.89517 4.94628 5.00273 5.05125 5.06607 5.09618 5.17329 5.26020 5.29853 5.42971 5.59012 5.76548 5.79474 5.90620 5.94746 6.20973 6.31325 6.41344 6.51814 6.69034 6.75646 6.98718 7.14079 7.46106 8.10776 8.15810 8.25391 8.67208 9.17414 10.76092 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.046754 B = 0.002727 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.729303 B =10265.348804 C =10415.605541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.391 6.391 3 C 0.065 3.935 4 C -0.120 4.120 5 C 0.074 3.926 6 O -0.354 6.354 7 C 0.553 3.447 8 O -0.529 6.529 9 C -0.316 4.316 10 C 0.084 3.916 11 N -0.294 5.294 12 N -0.310 5.310 13 C 0.224 3.776 14 C -0.548 4.548 15 H 0.082 0.918 16 C 0.082 3.918 17 N -0.881 5.881 18 Si 0.873 3.127 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.263 1.263 22 C 0.176 3.824 23 C -0.103 4.103 24 H 0.042 0.958 25 H 0.042 0.958 26 H 0.087 0.913 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.188 0.812 34 H 0.049 0.951 35 H 0.057 0.943 36 H 0.271 0.729 37 H 0.080 0.920 38 H 0.097 0.903 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.709 -6.681 -7.691 22.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C -0.012 4.012 4 C -0.158 4.158 5 C -0.001 4.001 6 O -0.271 6.271 7 C 0.400 3.600 8 O -0.420 6.420 9 C -0.329 4.329 10 C -0.103 4.103 11 N -0.113 5.113 12 N -0.086 5.086 13 C 0.105 3.895 14 C -0.586 4.586 15 H 0.101 0.899 16 C -0.124 4.124 17 N -0.517 5.517 18 Si 0.699 3.301 19 H -0.195 1.195 20 H -0.203 1.203 21 H -0.188 1.188 22 C 0.038 3.962 23 C -0.161 4.161 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.105 0.895 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.205 0.795 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.098 0.902 38 H 0.116 0.884 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -18.235 -6.774 -7.572 20.874 hybrid contribution -0.507 0.886 -0.480 1.128 sum -18.742 -5.888 -8.052 21.231 Atomic orbital electron populations 1.22757 0.80736 1.02895 1.00095 1.87866 1.19899 1.27722 1.95463 1.22337 0.93224 0.84902 1.00715 1.21392 0.92791 0.96383 1.05223 1.22700 0.77496 0.97185 1.02693 1.86514 1.20138 1.35312 1.85116 1.20002 0.87113 0.81126 0.71763 1.90758 1.71734 1.30776 1.48730 1.18817 0.89610 0.93503 1.30970 1.23962 0.89697 0.99057 0.97606 1.77225 1.20086 0.90106 1.23888 1.48958 1.06073 1.04357 1.49211 1.20202 0.79776 0.89144 1.00351 1.21089 1.12174 1.35390 0.89933 0.89949 1.24797 0.96487 0.95166 0.95903 1.69861 1.25113 1.38086 1.18673 0.86899 0.80471 0.80113 0.82666 1.19484 1.20327 1.18752 1.21443 0.84881 0.96399 0.93438 1.20698 1.03941 0.87980 1.03475 0.93943 0.93984 0.89489 0.92826 0.92871 0.89807 0.89740 0.91153 0.91233 0.79548 0.93293 0.92479 0.91915 0.90158 0.88423 0.89393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.67 10.70 -35.23 -0.38 -4.05 16 3 C 0.06 0.52 5.94 37.16 0.22 0.74 16 4 C -0.12 -1.10 5.96 -26.73 -0.16 -1.26 16 5 C 0.07 0.81 5.48 37.16 0.20 1.01 16 6 O -0.35 -5.08 10.07 -40.64 -0.41 -5.48 16 7 C 0.55 9.37 7.95 34.41 0.27 9.65 16 8 O -0.53 -9.56 14.63 -19.28 -0.28 -9.85 16 9 C -0.32 -5.83 6.13 -105.08 -0.64 -6.48 16 10 C 0.08 1.52 11.87 -16.97 -0.20 1.32 16 11 N -0.29 -6.26 12.50 30.87 0.39 -5.87 16 12 N -0.31 -6.78 3.56 -57.77 -0.21 -6.99 16 13 C 0.22 5.11 4.85 -5.20 -0.03 5.09 16 14 C -0.55 -14.78 9.94 -34.44 -0.34 -15.12 16 15 H 0.08 2.52 8.06 -52.49 -0.42 2.10 16 16 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 17 N -0.88 -25.52 13.96 55.43 0.77 -24.74 16 18 Si 0.87 19.46 27.47 -169.99 -4.67 14.79 16 19 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 20 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 21 H -0.26 -5.58 6.54 56.52 0.37 -5.21 16 22 C 0.18 3.46 7.01 -81.59 -0.57 2.89 16 23 C -0.10 -1.73 9.34 36.01 0.34 -1.40 16 24 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 25 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 26 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.38 8.14 -51.92 -0.42 -0.05 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.19 2.62 8.06 -52.49 -0.42 2.20 16 34 H 0.05 1.02 7.05 -51.93 -0.37 0.65 16 35 H 0.06 1.31 7.19 -51.93 -0.37 0.94 16 36 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 37 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.10 1.62 6.51 -51.93 -0.34 1.29 16 39 H 0.09 1.53 7.70 -51.93 -0.40 1.13 16 LS Contribution 338.87 15.07 5.11 5.11 Total: -1.00 -31.56 338.87 -5.29 -36.85 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -5.72 Total: 0.39 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: 0.11 Total: -0.15 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: 0.95 Total: -37.60 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -1.07 Total: -19.38 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -4.67 Total: 14.79 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.56 -5.29 -36.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892589430.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.779 kcal (2) G-P(sol) polarization free energy of solvation -31.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds