Wall clock time and date at job start Tue Mar 31 2020 05:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42904 * 114.00016 * 2 1 4 4 C 1.53001 * 109.47370 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47148 * 180.02562 * 4 3 2 6 6 O 1.45200 * 109.46730 * 180.02562 * 5 4 3 7 7 C 1.34756 * 116.99417 * 180.02562 * 6 5 4 8 8 O 1.21520 * 120.00292 * 359.97438 * 7 6 5 9 9 C 1.47291 * 119.99648 * 180.02562 * 7 6 5 10 10 C 1.41344 * 126.42578 * 0.03822 * 9 7 6 11 11 N 1.30427 * 108.01038 * 179.68626 * 10 9 7 12 12 N 1.39939 * 108.92113 * 0.44175 * 11 10 9 13 13 C 1.46491 * 125.74450 * 179.81281 * 12 11 10 14 14 C 1.50702 * 109.46957 * 269.69080 * 13 12 11 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 13 12 17 17 N 1.31514 * 119.99985 * 180.27663 * 16 14 13 18 18 Si 1.86800 * 119.99777 * 0.28166 * 16 14 13 19 19 H 1.48498 * 109.47109 * 89.99834 * 18 16 14 20 20 H 1.48507 * 109.46754 * 209.99574 * 18 16 14 21 21 H 1.48498 * 109.47278 * 329.99405 * 18 16 14 22 22 C 1.34222 * 108.50592 * 359.54733 * 12 11 10 23 23 C 1.50707 * 126.29232 * 180.23890 * 22 12 11 24 24 H 1.09003 * 109.47467 * 299.99528 * 1 2 3 25 25 H 1.09005 * 109.47597 * 59.99823 * 1 2 3 26 26 H 1.09003 * 109.47371 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46602 * 60.00060 * 3 2 1 28 28 H 1.09002 * 109.47169 * 300.00665 * 3 2 1 29 29 H 1.09001 * 109.46962 * 60.00068 * 4 3 2 30 30 H 1.08997 * 109.46707 * 300.00512 * 4 3 2 31 31 H 1.08996 * 109.46514 * 60.00096 * 5 4 3 32 32 H 1.08996 * 109.46848 * 300.00124 * 5 4 3 33 33 H 1.08000 * 125.99491 * 359.96182 * 10 9 7 34 34 H 1.09004 * 109.47166 * 149.69346 * 13 12 11 35 35 H 1.08994 * 109.47507 * 29.69052 * 13 12 11 36 36 H 0.96996 * 119.99730 * 180.02562 * 17 16 14 37 37 H 1.09001 * 109.46792 * 89.99868 * 23 22 12 38 38 H 1.08995 * 109.47272 * 209.99987 * 23 22 12 39 39 H 1.08999 * 109.47175 * 330.00300 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1577 2.5825 0.0013 6 8 5.6051 2.4678 0.0013 7 6 6.3097 3.6165 0.0024 8 8 5.7304 4.6847 0.0028 9 6 7.7821 3.5772 0.0019 10 6 8.5908 2.4180 -0.0005 11 7 9.8388 2.7968 -0.0069 12 7 9.8885 4.1953 0.0012 13 6 11.1071 5.0083 0.0014 14 6 11.5260 5.2850 1.4223 15 1 10.9431 4.8940 2.2431 16 6 12.6571 6.0322 1.6745 17 7 13.0258 6.2691 2.9145 18 14 13.6658 6.7080 0.2549 19 1 13.1603 8.0545 -0.1146 20 1 15.0900 6.8088 0.6635 21 1 13.5490 5.7979 -0.9127 22 6 8.6316 4.6663 0.0028 23 6 8.2225 6.1168 0.0057 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6885 1.8464 0.8901 28 1 1.6884 1.8465 -0.8899 29 1 3.8574 0.6437 -0.8891 30 1 3.8566 0.6439 0.8908 31 1 3.8356 3.1231 0.8913 32 1 3.8364 3.1236 -0.8887 33 1 8.2372 1.3975 -0.0016 34 1 10.9150 5.9511 -0.5109 35 1 11.9029 4.4704 -0.5138 36 1 13.8212 6.7950 3.0919 37 1 8.1233 6.4683 -1.0213 38 1 7.2677 6.2239 0.5203 39 1 8.9808 6.7071 0.5201 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892589430.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:58 Heat of formation + Delta-G solvation = -90.126064 kcal Electronic energy + Delta-G solvation = -21295.533723 eV Core-core repulsion = 17818.125260 eV Total energy + Delta-G solvation = -3477.408464 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.45625 -40.94759 -38.94569 -37.48729 -35.80075 -34.14754 -33.84201 -32.94227 -29.96727 -28.60659 -27.95960 -26.15798 -24.99790 -23.74718 -22.59453 -21.75148 -20.46557 -19.28980 -18.78387 -17.85417 -17.74106 -17.08658 -16.87002 -16.68942 -16.34594 -15.87453 -15.81416 -15.27207 -14.94387 -14.62190 -14.42720 -14.11407 -13.82972 -13.72090 -13.59068 -13.18808 -13.06707 -12.94023 -12.66857 -12.56883 -12.35608 -12.16697 -12.01407 -11.85249 -11.83845 -11.46112 -11.30637 -10.91631 -10.62897 -10.33015 -9.67522 -8.42973 -6.55684 0.40146 1.15303 1.32183 1.35479 1.41781 1.48475 1.83087 2.22196 2.25163 2.87353 2.90438 3.63543 3.72594 3.87986 3.95044 4.01519 4.10790 4.18095 4.34595 4.39438 4.47322 4.48966 4.53562 4.57083 4.62315 4.63800 4.72841 4.88268 4.93114 5.04196 5.06585 5.11555 5.16607 5.44891 5.56359 5.77868 6.16760 6.20700 6.47638 6.67097 6.87878 7.08289 8.73310 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.046754 B = 0.002727 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.729303 B =10265.348804 C =10415.605541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.065 3.935 4 C -0.113 4.113 5 C 0.070 3.930 6 O -0.353 6.353 7 C 0.559 3.441 8 O -0.541 6.541 9 C -0.323 4.323 10 C 0.099 3.901 11 N -0.333 5.333 12 N -0.334 5.334 13 C 0.232 3.768 14 C -0.555 4.555 15 H 0.026 0.974 16 C 0.023 3.977 17 N -0.934 5.934 18 Si 0.950 3.050 19 H -0.250 1.250 20 H -0.279 1.279 21 H -0.242 1.242 22 C 0.164 3.836 23 C -0.098 4.098 24 H 0.050 0.950 25 H 0.052 0.948 26 H 0.096 0.904 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.224 0.776 34 H 0.077 0.923 35 H 0.059 0.941 36 H 0.275 0.725 37 H 0.108 0.892 38 H 0.099 0.901 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.920 -6.587 -9.804 24.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C -0.011 4.011 4 C -0.150 4.150 5 C -0.004 4.004 6 O -0.269 6.269 7 C 0.406 3.594 8 O -0.433 6.433 9 C -0.336 4.336 10 C -0.089 4.089 11 N -0.152 5.152 12 N -0.110 5.110 13 C 0.113 3.887 14 C -0.593 4.593 15 H 0.045 0.955 16 C -0.177 4.177 17 N -0.572 5.572 18 Si 0.771 3.229 19 H -0.174 1.174 20 H -0.204 1.204 21 H -0.165 1.165 22 C 0.028 3.972 23 C -0.156 4.156 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.114 0.886 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.240 0.760 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.126 0.874 38 H 0.117 0.883 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -19.492 -6.702 -9.692 22.777 hybrid contribution -0.324 0.740 0.272 0.852 sum -19.817 -5.962 -9.420 22.737 Atomic orbital electron populations 1.22943 0.79183 1.03915 1.01028 1.87819 1.21687 1.28443 1.95672 1.22353 0.92175 0.84788 1.01825 1.21320 0.93719 0.95029 1.04941 1.22972 0.75428 0.98603 1.03382 1.86488 1.22044 1.33902 1.84483 1.19723 0.86621 0.81552 0.71500 1.90749 1.71890 1.31395 1.49313 1.19077 0.90699 0.93351 1.30447 1.24559 0.88600 1.00543 0.95189 1.77167 1.21959 0.90193 1.25865 1.48839 1.06310 1.04639 1.51182 1.19983 0.80685 0.90504 0.97552 1.21178 1.11968 1.35287 0.90888 0.95514 1.25832 0.97639 0.95197 0.99073 1.70024 1.26103 1.39448 1.21610 0.85692 0.77945 0.80313 0.78994 1.17447 1.20438 1.16504 1.21995 0.84467 0.97969 0.92799 1.20748 1.03407 0.86342 1.05063 0.93091 0.92945 0.88557 0.91894 0.91598 0.89886 0.90253 0.90769 0.90285 0.75991 0.90576 0.92310 0.91626 0.87415 0.88290 0.90400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.51 16 2 O -0.42 -7.15 10.70 -148.98 -1.59 -8.75 16 3 C 0.07 0.91 5.94 71.98 0.43 1.34 16 4 C -0.11 -1.86 5.96 30.60 0.18 -1.67 16 5 C 0.07 1.40 5.48 71.98 0.39 1.79 16 6 O -0.35 -9.46 10.07 -56.67 -0.57 -10.03 16 7 C 0.56 18.10 7.95 70.20 0.56 18.65 16 8 O -0.54 -18.71 14.63 19.77 0.29 -18.43 16 9 C -0.32 -11.59 6.13 -20.16 -0.12 -11.72 16 10 C 0.10 3.43 11.87 85.67 1.02 4.45 16 11 N -0.33 -14.13 12.50 -56.25 -0.70 -14.83 16 12 N -0.33 -14.56 3.56 -336.67 -1.20 -15.76 16 13 C 0.23 10.51 4.85 85.64 0.42 10.92 16 14 C -0.56 -30.83 9.94 25.60 0.25 -30.57 16 15 H 0.03 1.73 8.06 -2.91 -0.02 1.70 16 16 C 0.02 1.26 5.47 84.66 0.46 1.72 16 17 N -0.93 -55.75 13.96 21.45 0.30 -55.45 16 18 Si 0.95 39.50 27.47 68.60 1.88 41.39 16 19 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 20 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16 21 H -0.24 -9.17 6.54 99.48 0.65 -8.52 16 22 C 0.16 6.37 7.01 42.17 0.30 6.66 16 23 C -0.10 -3.20 9.34 71.24 0.67 -2.53 16 24 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 25 H 0.05 0.43 8.14 -2.38 -0.02 0.41 16 26 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.06 0.75 8.14 -2.38 -0.02 0.74 16 28 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.22 5.76 8.06 -2.91 -0.02 5.74 16 34 H 0.08 3.02 7.05 -2.38 -0.02 3.00 16 35 H 0.06 2.63 7.19 -2.39 -0.02 2.61 16 36 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 37 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 38 H 0.10 3.20 6.51 -2.39 -0.02 3.19 16 39 H 0.08 2.69 7.70 -2.39 -0.02 2.67 16 Total: -1.00 -70.05 338.87 5.19 -64.86 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: 0.98 Total: 16.44 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: 5.80 Total: 0.55 kcal Atomic # 7 Polarization: -84.43 SS G_CDS: -1.60 Total: -86.04 kcal Atomic # 8 Polarization: -35.33 SS G_CDS: -1.88 Total: -37.20 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 1.88 Total: 41.39 kcal Total: -70.05 5.19 -64.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892589430.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.268 kcal (2) G-P(sol) polarization free energy of solvation -70.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds