Wall clock time and date at job start Tue Mar 31 2020 05:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.47448 * 111.00126 * 2 1 4 4 C 1.54316 * 107.23114 * 123.25924 * 3 2 1 5 5 C 1.55136 * 103.02313 * 22.28497 * 4 3 2 6 6 C 1.47842 * 111.00067 * 120.84593 * 2 1 3 7 7 H 1.09000 * 110.37380 * 332.57527 * 6 2 1 8 8 C 1.53005 * 110.37565 * 94.80956 * 6 2 1 9 9 S 1.81002 * 109.46544 * 298.54427 * 8 6 2 10 10 C 1.76204 * 99.99748 * 179.97438 * 9 8 6 11 11 N 1.32381 * 126.25714 * 359.97438 * 10 9 8 12 12 N 1.28514 * 110.20556 * 179.97438 * 11 10 9 13 13 C 1.33104 * 109.74287 * 0.02562 * 12 11 10 14 14 C 1.39781 * 126.56302 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99433 * 180.02562 * 14 13 12 16 16 C 1.40080 * 120.00200 * 0.02562 * 14 13 12 17 17 N 1.30821 * 119.99639 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 119.99858 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47259 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47031 * 120.00296 * 18 16 14 21 21 H 1.48508 * 109.46995 * 240.00045 * 18 16 14 22 22 N 1.36672 * 126.25611 * 179.97438 * 10 9 8 23 23 C 1.46498 * 127.15539 * 0.02735 * 22 10 9 24 24 H 1.08997 * 109.47424 * 299.15568 * 1 2 3 25 25 H 1.09001 * 109.47499 * 59.15556 * 1 2 3 26 26 H 1.09004 * 109.47054 * 179.15713 * 1 2 3 27 27 H 1.08996 * 109.89016 * 242.66676 * 3 2 1 28 28 H 1.09000 * 109.88626 * 3.69216 * 3 2 1 29 29 H 1.08998 * 110.70643 * 140.67128 * 4 3 2 30 30 H 1.09003 * 110.70645 * 263.72807 * 4 3 2 31 31 H 1.08998 * 110.99626 * 206.25429 * 5 4 3 32 32 H 1.09001 * 110.99231 * 82.43109 * 5 4 3 33 33 H 1.08996 * 109.47227 * 178.54787 * 8 6 2 34 34 H 1.08991 * 109.47187 * 58.54114 * 8 6 2 35 35 H 0.96994 * 119.99335 * 179.97438 * 17 16 14 36 36 H 1.09003 * 109.47128 * 89.96756 * 23 22 10 37 37 H 1.08992 * 109.47320 * 209.97047 * 23 22 10 38 38 H 1.09002 * 109.46765 * 329.97251 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9974 1.3765 0.0000 4 6 2.9158 1.5136 1.2325 5 6 3.3047 0.0444 1.5438 6 6 1.9988 -0.7077 1.1850 7 1 1.2880 -0.6519 2.0095 8 6 2.3020 -2.1677 0.8421 9 16 0.7751 -2.9983 0.3371 10 6 1.3993 -4.6132 0.0097 11 7 2.6577 -5.0057 0.1313 12 7 2.7685 -6.2460 -0.1865 13 6 1.5781 -6.7289 -0.5349 14 6 1.2967 -8.0359 -0.9429 15 1 0.2862 -8.3146 -1.2032 16 6 2.3252 -8.9843 -1.0140 17 7 3.5490 -8.6468 -0.6982 18 14 1.9489 -10.7310 -1.5585 19 1 0.4996 -10.8552 -1.8569 20 1 2.7339 -11.0492 -2.7783 21 1 2.3144 -11.6772 -0.4738 22 7 0.6727 -5.6896 -0.4161 23 6 -0.7658 -5.7336 -0.6902 24 1 -0.3634 0.5006 0.8974 25 1 -0.3634 0.5269 -0.8823 26 1 -0.3633 -1.0276 -0.0151 27 1 2.5696 1.5541 -0.9105 28 1 1.1753 2.0893 0.0660 29 1 3.8000 2.1033 0.9905 30 1 2.3753 1.9574 2.0685 31 1 3.5495 -0.0797 2.5986 32 1 4.1301 -0.2834 0.9118 33 1 2.7153 -2.6682 1.7177 34 1 3.0238 -2.2070 0.0265 35 1 4.2611 -9.3035 -0.7472 36 1 -0.9447 -5.4777 -1.7346 37 1 -1.1428 -6.7369 -0.4922 38 1 -1.2800 -5.0188 -0.0478 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000917611608.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:28 Heat of formation + Delta-G solvation = 70.171800 kcal Electronic energy + Delta-G solvation = -19757.536149 eV Core-core repulsion = 16762.124345 eV Total energy + Delta-G solvation = -2995.411804 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.41781 -39.15813 -33.63875 -33.25843 -32.18502 -31.43867 -29.24222 -26.56448 -26.12307 -25.47578 -24.83969 -21.26004 -20.80350 -20.60057 -19.84606 -17.29267 -16.49719 -16.05639 -15.48622 -15.37830 -14.67466 -14.44518 -14.20320 -13.86374 -13.64480 -13.25620 -12.93208 -12.77984 -12.38476 -12.22269 -12.16096 -11.59496 -11.46230 -11.35182 -11.27092 -11.24504 -10.90642 -10.86713 -10.82325 -10.30214 -9.93508 -9.60789 -9.56651 -8.61310 -8.37221 -8.32141 -8.27825 -6.70644 -6.59945 -4.50939 2.17654 2.94436 2.97513 3.09102 3.13705 3.43706 3.88451 3.91284 4.30404 4.49318 4.51234 4.61016 4.83645 5.10843 5.24014 5.33883 5.36558 5.38482 5.48375 5.59579 5.62513 5.65946 5.74021 5.84707 5.90935 5.93516 6.04253 6.08216 6.12411 6.33424 6.85876 6.92301 6.95337 7.03809 7.30272 7.56070 7.97787 8.23705 8.75885 8.92992 10.32935 10.72458 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.039388 B = 0.003773 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.703236 B = 7418.907740 C = 7948.130457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.525 5.525 3 C 0.042 3.958 4 C -0.141 4.141 5 C -0.119 4.119 6 C 0.085 3.915 7 H 0.062 0.938 8 C -0.071 4.071 9 S -0.054 6.054 10 C 0.046 3.954 11 N -0.289 5.289 12 N -0.335 5.335 13 C 0.344 3.656 14 C -0.449 4.449 15 H 0.083 0.917 16 C 0.078 3.922 17 N -0.738 5.738 18 Si 0.920 3.080 19 H -0.262 1.262 20 H -0.272 1.272 21 H -0.273 1.273 22 N -0.516 5.516 23 C 0.103 3.897 24 H 0.023 0.977 25 H 0.068 0.932 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.053 0.947 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.278 0.722 36 H 0.055 0.945 37 H 0.077 0.923 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.802 14.785 2.674 16.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.250 5.250 3 C -0.086 4.086 4 C -0.180 4.180 5 C -0.159 4.159 6 C -0.024 4.024 7 H 0.080 0.920 8 C -0.221 4.221 9 S 0.174 5.826 10 C -0.325 4.325 11 N -0.135 5.135 12 N -0.182 5.182 13 C 0.099 3.901 14 C -0.489 4.489 15 H 0.101 0.899 16 C -0.147 4.147 17 N -0.362 5.362 18 Si 0.744 3.256 19 H -0.186 1.186 20 H -0.198 1.198 21 H -0.198 1.198 22 N -0.218 5.218 23 C -0.042 4.042 24 H 0.042 0.958 25 H 0.087 0.913 26 H 0.100 0.900 27 H 0.095 0.905 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.109 0.891 34 H 0.114 0.886 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.026 14.950 2.450 15.961 hybrid contribution -0.706 -1.113 0.183 1.331 sum -5.732 13.837 2.632 15.206 Atomic orbital electron populations 1.22678 0.87420 1.02802 1.00090 1.63442 1.08116 1.13477 1.39933 1.22823 0.97832 0.89413 0.98522 1.22777 0.99976 0.97193 0.98042 1.22729 0.97205 0.93937 1.02024 1.22408 0.96346 0.92341 0.91331 0.92017 1.23293 0.98626 0.94828 1.05372 1.84243 1.13856 0.97728 1.86736 1.25676 0.93509 0.94630 1.18731 1.74518 1.12782 1.09017 1.17175 1.75446 1.17379 0.99428 1.25926 1.21635 0.83676 0.89453 0.95314 1.18123 0.96333 0.90711 1.43743 0.89855 1.25789 0.94303 1.00698 0.93899 1.70031 1.00342 1.35007 1.30840 0.86082 0.79632 0.81019 0.78876 1.18581 1.19769 1.19784 1.46058 1.07989 1.09291 1.58474 1.21466 0.79445 1.02778 1.00538 0.95810 0.91308 0.90010 0.90461 0.92870 0.90651 0.91628 0.90467 0.89909 0.89099 0.88605 0.91126 0.92626 0.90479 0.91648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 8.88 60.06 0.53 0.75 16 2 N -0.53 -6.64 4.95 -231.60 -1.15 -7.79 16 3 C 0.04 0.42 6.90 -2.83 -0.02 0.40 16 4 C -0.14 -1.24 6.94 -24.91 -0.17 -1.41 16 5 C -0.12 -1.26 6.50 -24.59 -0.16 -1.42 16 6 C 0.09 1.09 2.64 -66.18 -0.17 0.92 16 7 H 0.06 0.77 7.77 -51.93 -0.40 0.36 16 8 C -0.07 -1.18 4.96 37.16 0.18 -1.00 16 9 S -0.05 -0.99 18.71 -107.50 -2.01 -3.00 16 10 C 0.05 1.14 8.09 -87.28 -0.71 0.44 16 11 N -0.29 -8.19 11.62 30.89 0.36 -7.83 16 12 N -0.33 -10.35 10.48 31.26 0.33 -10.02 16 13 C 0.34 9.89 7.53 -154.80 -1.17 8.73 16 14 C -0.45 -12.18 9.05 -38.31 -0.35 -12.53 16 15 H 0.08 2.06 7.30 -52.48 -0.38 1.67 16 16 C 0.08 2.04 5.50 -17.29 -0.10 1.95 16 17 N -0.74 -20.70 11.94 55.56 0.66 -20.04 16 18 Si 0.92 18.87 29.56 -169.99 -5.03 13.84 16 19 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 20 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 21 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 22 N -0.52 -12.87 3.26 -123.18 -0.40 -13.27 16 23 C 0.10 1.94 10.88 59.85 0.65 2.59 16 24 H 0.02 0.24 8.09 -51.93 -0.42 -0.18 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.08 1.07 5.24 -45.87 -0.24 0.83 16 27 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.47 7.58 -51.93 -0.39 0.07 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.93 8.06 -51.93 -0.42 0.51 16 33 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 34 H 0.10 1.78 8.14 -51.92 -0.42 1.35 16 35 H 0.28 7.00 8.30 -40.82 -0.34 6.66 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.08 1.37 7.52 -51.93 -0.39 0.98 16 38 H 0.06 1.08 7.85 -51.93 -0.41 0.67 16 LS Contribution 322.53 15.07 4.86 4.86 Total: -1.00 -33.58 322.53 -9.42 -43.00 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -5.57 Total: 0.84 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -1.47 Total: -0.58 kcal Atomic # 7 Polarization: -58.76 SS G_CDS: -0.20 Total: -58.96 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.03 Total: 13.84 kcal Atomic # 16 Polarization: -0.99 SS G_CDS: -2.01 Total: -3.00 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.58 -9.42 -43.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000917611608.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.167 kcal (2) G-P(sol) polarization free energy of solvation -33.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds