Wall clock time and date at job start Tue Mar 31 2020 05:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.48559 * 110.99625 * 2 1 4 4 C 1.54383 * 104.59019 * 200.95768 * 3 2 1 5 5 C 1.54258 * 105.06211 * 23.84936 * 4 3 2 6 6 C 1.48556 * 111.00149 * 244.57683 * 2 1 3 7 7 H 1.08995 * 110.51426 * 40.21247 * 6 2 1 8 8 C 1.53003 * 110.40948 * 277.81808 * 6 2 1 9 9 S 1.80999 * 109.47345 * 69.83122 * 8 6 2 10 10 C 1.76199 * 100.00135 * 179.97438 * 9 8 6 11 11 N 1.32379 * 126.26066 * 359.97438 * 10 9 8 12 12 N 1.28508 * 110.20823 * 180.02562 * 11 10 9 13 13 C 1.33097 * 109.74535 * 359.97438 * 12 11 10 14 14 C 1.39773 * 126.56606 * 180.02562 * 13 12 11 15 15 H 1.08008 * 119.99838 * 174.17384 * 14 13 12 16 16 C 1.40082 * 120.00292 * 354.17574 * 14 13 12 17 17 N 1.30817 * 119.99774 * 6.02193 * 16 14 13 18 18 Si 1.86796 * 120.00058 * 186.02326 * 16 14 13 19 19 H 1.48495 * 109.47348 * 94.97993 * 18 16 14 20 20 H 1.48502 * 109.46800 * 214.98001 * 18 16 14 21 21 H 1.48497 * 109.47238 * 334.97577 * 18 16 14 22 22 N 1.36671 * 126.25489 * 180.29046 * 10 9 8 23 23 C 1.46494 * 127.15785 * 0.02562 * 22 10 9 24 24 H 1.09010 * 109.47042 * 175.42180 * 1 2 3 25 25 H 1.08994 * 109.47864 * 295.42167 * 1 2 3 26 26 H 1.08993 * 109.46948 * 55.42599 * 1 2 3 27 27 H 1.08994 * 110.41573 * 82.18244 * 3 2 1 28 28 H 1.09001 * 110.50829 * 319.77893 * 3 2 1 29 29 H 1.08998 * 110.32240 * 264.95706 * 4 3 2 30 30 H 1.09005 * 110.40918 * 142.79003 * 4 3 2 31 31 H 1.09003 * 110.32703 * 241.10317 * 5 4 3 32 32 H 1.09005 * 110.41306 * 118.93955 * 5 4 3 33 33 H 1.09000 * 109.47257 * 309.82383 * 8 6 2 34 34 H 1.09008 * 109.46851 * 189.82828 * 8 6 2 35 35 H 0.96996 * 119.99745 * 180.02562 * 17 16 14 36 36 H 1.09003 * 109.47664 * 270.15132 * 23 22 10 37 37 H 1.09008 * 109.47119 * 30.14947 * 23 22 10 38 38 H 1.09000 * 109.47260 * 150.15237 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3870 0.0000 4 6 3.4432 1.2501 -0.5344 5 6 3.4433 -0.0540 -1.3583 6 6 2.0014 -0.5954 -1.2526 7 1 1.4106 -0.2732 -2.1099 8 6 2.0106 -2.1223 -1.1557 9 16 0.3090 -2.7387 -1.1815 10 6 0.6091 -4.4708 -1.0614 11 7 1.7935 -5.0564 -0.9802 12 7 1.6540 -6.3318 -0.9058 13 6 0.3608 -6.6450 -0.9344 14 6 -0.1863 -7.9298 -0.8741 15 1 -1.2568 -8.0585 -0.8108 16 6 0.6538 -9.0506 -0.8957 17 7 1.9521 -8.8958 -0.8533 18 14 -0.0798 -10.7662 -0.9850 19 1 -0.1237 -11.2127 -2.4006 20 1 0.7580 -11.7044 -0.1958 21 1 -1.4569 -10.7452 -0.4296 22 7 -0.3382 -5.4558 -1.0411 23 6 -1.7916 -5.2873 -1.1144 24 1 -0.3634 -1.0245 -0.0820 25 1 -0.3634 0.4411 0.9281 26 1 -0.3633 0.5831 -0.8461 27 1 2.0078 1.7917 1.0120 28 1 1.4104 2.0228 -0.6593 29 1 4.1482 1.1748 0.2935 30 1 3.6954 2.0993 -1.1696 31 1 4.1484 -0.7694 -0.9349 32 1 3.6944 0.1536 -2.3986 33 1 2.4925 -2.4246 -0.2259 34 1 2.5600 -2.5367 -2.0011 35 1 2.5338 -9.6718 -0.8687 36 1 -2.1961 -5.1790 -0.1081 37 1 -2.0251 -4.3964 -1.6977 38 1 -2.2350 -6.1609 -1.5922 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000917611652.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:30 Heat of formation + Delta-G solvation = 70.875460 kcal Electronic energy + Delta-G solvation = -19770.914280 eV Core-core repulsion = 16775.532989 eV Total energy + Delta-G solvation = -2995.381291 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.121 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.44771 -39.10417 -33.66066 -33.28451 -32.25472 -31.44035 -29.27063 -26.56558 -26.07094 -25.48559 -24.87364 -21.06973 -20.91666 -20.61967 -19.91729 -17.31964 -16.46472 -15.98074 -15.41909 -15.16956 -15.04678 -14.60981 -14.47151 -13.83614 -13.71654 -13.27259 -12.69289 -12.61598 -12.31329 -12.22604 -12.13945 -11.57840 -11.53084 -11.48802 -11.29851 -11.28464 -10.93663 -10.89354 -10.61003 -10.33792 -9.98013 -9.66809 -9.52995 -8.64132 -8.54588 -8.35455 -8.29975 -6.74214 -6.62305 -4.53449 2.11799 2.89359 2.93780 3.07857 3.11723 3.40997 3.89708 3.92388 4.27483 4.47022 4.57605 4.61090 4.88641 5.09701 5.24007 5.35128 5.38958 5.42338 5.50178 5.56003 5.57597 5.70982 5.76076 5.83895 5.90882 5.97392 6.06013 6.07524 6.15052 6.32160 6.81297 6.83524 6.93534 6.98362 7.27955 7.53372 7.94929 8.21449 8.73668 8.90500 10.30686 10.69508 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.039359 B = 0.003783 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.228240 B = 7399.643029 C = 7933.705028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.000 4.000 2 N -0.506 5.506 3 C 0.031 3.969 4 C -0.123 4.123 5 C -0.116 4.116 6 C 0.076 3.924 7 H 0.059 0.941 8 C -0.073 4.073 9 S -0.058 6.058 10 C 0.043 3.957 11 N -0.287 5.287 12 N -0.335 5.335 13 C 0.345 3.655 14 C -0.450 4.450 15 H 0.084 0.916 16 C 0.079 3.921 17 N -0.737 5.737 18 Si 0.920 3.080 19 H -0.270 1.270 20 H -0.275 1.275 21 H -0.262 1.262 22 N -0.516 5.516 23 C 0.102 3.898 24 H 0.096 0.904 25 H 0.069 0.931 26 H 0.025 0.975 27 H 0.080 0.920 28 H 0.041 0.959 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.279 0.721 36 H 0.055 0.945 37 H 0.065 0.935 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.021 15.415 -0.888 15.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 N -0.230 5.230 3 C -0.097 4.097 4 C -0.161 4.161 5 C -0.156 4.156 6 C -0.034 4.034 7 H 0.077 0.923 8 C -0.223 4.223 9 S 0.171 5.829 10 C -0.328 4.328 11 N -0.133 5.133 12 N -0.182 5.182 13 C 0.100 3.900 14 C -0.490 4.490 15 H 0.102 0.898 16 C -0.147 4.147 17 N -0.361 5.361 18 Si 0.744 3.256 19 H -0.195 1.195 20 H -0.200 1.200 21 H -0.186 1.186 22 N -0.218 5.218 23 C -0.043 4.043 24 H 0.114 0.886 25 H 0.087 0.913 26 H 0.043 0.957 27 H 0.098 0.902 28 H 0.060 0.940 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.118 0.882 34 H 0.112 0.888 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.143 15.428 -0.421 15.582 hybrid contribution -1.077 -1.025 -0.693 1.640 sum -3.220 14.404 -1.114 14.801 Atomic orbital electron populations 1.22915 0.87632 1.03926 1.00534 1.65316 1.08648 1.14522 1.34556 1.23108 0.95225 0.90293 1.01075 1.22285 0.96709 0.97396 0.99750 1.22319 0.95710 0.97175 1.00375 1.22489 0.96239 0.92925 0.91778 0.92296 1.23310 0.96408 0.95340 1.07238 1.84241 1.11558 0.92320 1.94755 1.25651 0.89815 0.94853 1.22481 1.74517 1.19043 1.03853 1.15857 1.75447 1.12371 1.01006 1.29353 1.21626 0.87189 0.86140 0.95021 1.18096 0.94551 0.86791 1.49538 0.89838 1.25791 0.94529 1.01032 0.93300 1.70023 1.03520 1.32140 1.30433 0.86119 0.79800 0.80663 0.79024 1.19472 1.19990 1.18645 1.46067 1.05780 1.06067 1.63881 1.21474 0.79152 1.02264 1.01400 0.88621 0.91258 0.95655 0.90159 0.94027 0.90868 0.91458 0.90196 0.91008 0.88220 0.88830 0.91045 0.92673 0.91619 0.90392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.00 9.18 60.07 0.55 0.55 16 2 N -0.51 -6.49 5.34 -230.35 -1.23 -7.72 16 3 C 0.03 0.31 6.49 -2.18 -0.01 0.30 16 4 C -0.12 -1.13 7.00 -25.35 -0.18 -1.31 16 5 C -0.12 -1.25 6.55 -25.35 -0.17 -1.41 16 6 C 0.08 0.98 2.47 -66.07 -0.16 0.81 16 7 H 0.06 0.74 7.97 -51.93 -0.41 0.33 16 8 C -0.07 -1.21 4.80 37.16 0.18 -1.03 16 9 S -0.06 -1.05 18.29 -107.50 -1.97 -3.02 16 10 C 0.04 1.07 8.09 -87.29 -0.71 0.36 16 11 N -0.29 -8.08 11.62 30.89 0.36 -7.72 16 12 N -0.33 -10.29 10.50 31.26 0.33 -9.96 16 13 C 0.35 9.86 7.53 -154.81 -1.17 8.69 16 14 C -0.45 -12.14 9.01 -38.32 -0.35 -12.48 16 15 H 0.08 2.05 7.40 -52.48 -0.39 1.66 16 16 C 0.08 2.05 5.49 -17.29 -0.09 1.95 16 17 N -0.74 -20.58 11.96 55.56 0.66 -19.92 16 18 Si 0.92 18.77 29.57 -169.99 -5.03 13.75 16 19 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 20 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 21 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 22 N -0.52 -12.76 3.26 -123.18 -0.40 -13.16 16 23 C 0.10 1.91 10.86 59.84 0.65 2.56 16 24 H 0.10 1.33 4.58 -32.36 -0.15 1.19 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.02 0.28 7.98 -51.93 -0.41 -0.14 16 27 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.04 0.38 7.91 -51.93 -0.41 -0.03 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.91 7.86 -51.93 -0.41 0.51 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.10 1.85 8.14 -51.92 -0.42 1.42 16 34 H 0.09 1.61 8.14 -51.91 -0.42 1.19 16 35 H 0.28 7.00 8.30 -40.82 -0.34 6.66 16 36 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.07 1.07 7.85 -51.92 -0.41 0.67 16 38 H 0.08 1.37 7.60 -51.93 -0.39 0.97 16 LS Contribution 321.91 15.07 4.85 4.85 Total: -1.00 -33.25 321.91 -9.37 -42.62 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -5.50 Total: 1.29 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -1.45 Total: -1.01 kcal Atomic # 7 Polarization: -58.20 SS G_CDS: -0.28 Total: -58.48 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.75 kcal Atomic # 16 Polarization: -1.05 SS G_CDS: -1.97 Total: -3.02 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.25 -9.37 -42.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000917611652.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.496 kcal (2) G-P(sol) polarization free energy of solvation -33.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds