Wall clock time and date at job start Tue Mar 31 2020 05:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.99552 * 2 1 4 4 C 1.54324 * 109.88158 * 238.90709 * 2 1 3 5 5 H 1.09000 * 110.71874 * 336.92723 * 4 2 1 6 6 N 1.46496 * 110.72137 * 100.02835 * 4 2 1 7 7 C 1.36945 * 119.99718 * 202.55765 * 6 4 2 8 8 H 1.07997 * 119.99756 * 359.97438 * 7 6 4 9 9 C 1.38805 * 119.99878 * 179.97438 * 7 6 4 10 10 N 1.31624 * 120.00257 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99929 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47187 * 179.97438 * 11 9 7 13 13 H 1.48494 * 109.47141 * 300.00154 * 11 9 7 14 14 H 1.48498 * 109.47018 * 60.00200 * 11 9 7 15 15 C 1.55159 * 103.09883 * 218.47763 * 4 2 1 16 16 C 1.54913 * 101.58472 * 35.41043 * 15 4 2 17 17 N 1.47315 * 110.06244 * 121.17111 * 2 1 3 18 18 C 1.34775 * 125.61584 * 298.24310 * 17 2 1 19 19 O 1.21581 * 120.00518 * 359.84032 * 18 17 2 20 20 C 1.47622 * 119.99935 * 179.84153 * 18 17 2 21 21 N 1.31867 * 126.45774 * 359.69056 * 20 18 17 22 22 N 1.28470 * 110.15202 * 179.81917 * 21 20 18 23 23 H 0.97002 * 124.92863 * 180.15909 * 22 21 20 24 24 C 1.35728 * 110.13665 * 0.45335 * 22 21 20 25 25 C 1.35541 * 107.11535 * 359.72760 * 24 22 21 26 26 F 1.35097 * 127.24570 * 179.97438 * 25 24 22 27 27 H 1.09000 * 109.47212 * 181.09677 * 1 2 3 28 28 H 1.09001 * 109.46996 * 301.09597 * 1 2 3 29 29 H 1.09004 * 109.46837 * 61.09562 * 1 2 3 30 30 H 0.96996 * 120.00499 * 22.55496 * 6 4 2 31 31 H 0.97001 * 119.99885 * 179.97438 * 10 9 7 32 32 H 1.08998 * 111.00515 * 153.48428 * 15 4 2 33 33 H 1.09000 * 111.00346 * 277.30076 * 15 4 2 34 34 H 1.09007 * 110.36263 * 81.82420 * 16 15 4 35 35 H 1.08995 * 110.37086 * 204.15203 * 16 15 4 36 36 H 1.07991 * 126.44460 * 179.72280 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7495 -1.2428 5 1 1.3039 -1.4436 -1.6201 6 7 2.4555 0.1961 -2.2875 7 6 2.5064 -0.2089 -3.5947 8 1 2.2515 -1.2255 -3.8552 9 6 2.8855 0.6871 -4.5846 10 7 3.1966 1.9260 -4.2670 11 14 2.9555 0.1344 -6.3676 12 1 3.3847 1.2709 -7.2217 13 1 3.9265 -0.9809 -6.5023 14 1 1.6104 -0.3259 -6.7964 15 6 3.2870 -1.5177 -0.6958 16 6 2.8162 -1.8830 0.7341 17 7 2.0354 -0.7162 1.1840 18 6 1.8176 -0.3640 2.4665 19 8 1.1556 0.6233 2.7219 20 6 2.3829 -1.1770 3.5614 21 7 3.1105 -2.2691 3.4313 22 7 3.4404 -2.7214 4.5876 23 1 3.9774 -3.5145 4.7412 24 6 2.9231 -1.9321 5.5631 25 6 2.2408 -0.9347 4.9493 26 9 1.5667 0.0774 5.5378 27 1 -0.3634 -1.0275 0.0197 28 1 -0.3633 0.5308 0.8800 29 1 -0.3633 0.4967 -0.8997 30 1 2.6847 1.1091 -2.0534 31 1 3.4618 2.5520 -4.9588 32 1 3.4811 -2.4144 -1.2842 33 1 4.1665 -0.8746 -0.6657 34 1 2.1880 -2.7736 0.7107 35 1 3.6743 -2.0401 1.3875 36 1 3.0341 -2.0724 6.6281 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986848730.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:00 Heat of formation + Delta-G solvation = 21.292350 kcal Electronic energy + Delta-G solvation = -22149.210076 eV Core-core repulsion = 18585.465523 eV Total energy + Delta-G solvation = -3563.744553 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.123 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -48.76749 -42.91281 -39.70488 -37.29503 -34.11242 -32.43387 -31.30737 -30.85929 -30.67938 -29.00362 -25.15250 -24.65804 -23.03365 -22.26151 -21.75384 -20.14747 -19.37007 -18.48990 -17.22164 -16.86319 -16.62312 -16.08685 -15.83024 -15.29337 -14.93727 -14.68215 -14.51197 -13.86586 -13.59233 -13.32349 -12.90134 -12.80759 -12.67553 -12.09376 -11.82260 -11.66570 -11.24222 -10.99675 -10.96011 -10.76474 -10.53520 -10.23734 -10.04348 -9.85838 -9.81904 -9.67509 -9.22480 -8.90982 -8.34453 -7.00387 -5.79028 -3.09409 1.24948 1.58757 2.34809 3.04843 3.36274 3.43199 3.47818 3.48919 3.94014 4.30977 4.53781 4.57085 4.75433 4.98048 5.14891 5.32529 5.44793 5.60445 5.67782 5.76631 5.87723 5.98890 6.11653 6.14466 6.20626 6.37726 6.47076 6.52154 6.64492 6.67163 6.78104 6.97349 7.33441 7.67463 7.75269 8.31047 8.38532 9.49703 10.04530 10.39433 11.43122 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.035737 B = 0.003790 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.313022 B = 7385.561884 C = 7812.062430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.127 3.873 3 H 0.080 0.920 4 C 0.176 3.824 5 H 0.067 0.933 6 N -0.715 5.715 7 C -0.244 4.244 8 H 0.072 0.928 9 C -0.010 4.010 10 N -0.930 5.930 11 Si 0.908 3.092 12 H -0.291 1.291 13 H -0.286 1.286 14 H -0.285 1.285 15 C -0.157 4.157 16 C 0.101 3.899 17 N -0.593 5.593 18 C 0.608 3.392 19 O -0.528 6.528 20 C -0.018 4.018 21 N -0.228 5.228 22 N -0.374 5.374 23 H 0.455 0.545 24 C -0.040 4.040 25 C 0.036 3.964 26 F -0.100 7.100 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.386 0.614 31 H 0.257 0.743 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.084 0.916 36 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.843 -11.984 19.603 22.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.024 3.976 3 H 0.098 0.902 4 C 0.065 3.935 5 H 0.084 0.916 6 N -0.355 5.355 7 C -0.375 4.375 8 H 0.090 0.910 9 C -0.206 4.206 10 N -0.578 5.578 11 Si 0.739 3.261 12 H -0.217 1.217 13 H -0.212 1.212 14 H -0.212 1.212 15 C -0.198 4.198 16 C -0.022 4.022 17 N -0.326 5.326 18 C 0.393 3.607 19 O -0.403 6.403 20 C -0.180 4.180 21 N -0.065 5.065 22 N -0.090 5.090 23 H 0.301 0.699 24 C -0.185 4.185 25 C 0.006 3.994 26 F -0.079 7.079 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.220 0.780 31 H 0.067 0.933 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.102 0.898 36 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 0.864 -12.101 18.817 22.389 hybrid contribution 0.120 0.192 0.008 0.226 sum 0.984 -11.909 18.825 22.297 Atomic orbital electron populations 1.22047 0.94682 1.01689 1.02844 1.22045 0.94530 0.96958 0.84041 0.90151 1.21253 0.93657 0.91575 0.87065 0.91557 1.42344 1.80261 1.10481 1.02406 1.19167 1.39005 0.95980 0.83321 0.91035 1.24757 1.02037 0.95739 0.98077 1.69659 1.51806 1.03787 1.32529 0.86258 0.77762 0.77232 0.84840 1.21703 1.21233 1.21201 1.23589 1.01270 1.01652 0.93287 1.22526 0.95339 0.87566 0.96753 1.48423 1.51305 1.28570 1.04307 1.16337 0.80477 0.83516 0.80322 1.90831 1.40210 1.26384 1.82832 1.22269 1.04959 0.97008 0.93788 1.73834 1.14229 1.11129 1.07263 1.43127 1.39679 1.23643 1.02542 0.69864 1.22645 1.03742 0.95109 0.97007 1.17189 1.01762 0.90701 0.89729 1.91541 1.77403 1.56107 1.82814 0.93039 0.91924 0.90928 0.77970 0.93335 0.90596 0.90732 0.91818 0.89764 0.78597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 9.11 37.16 0.34 -2.34 16 2 C 0.13 2.35 3.22 -66.79 -0.21 2.14 16 3 H 0.08 1.65 7.70 -51.93 -0.40 1.25 16 4 C 0.18 3.44 3.12 -66.10 -0.21 3.24 16 5 H 0.07 1.29 7.81 -51.93 -0.41 0.88 16 6 N -0.71 -17.50 5.24 -51.65 -0.27 -17.78 16 7 C -0.24 -6.56 9.97 -15.06 -0.15 -6.72 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 10 N -0.93 -27.78 13.06 55.49 0.72 -27.05 16 11 Si 0.91 21.99 29.55 -169.99 -5.02 16.96 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 13 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 14 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 15 C -0.16 -2.65 6.77 -24.58 -0.17 -2.82 16 16 C 0.10 1.47 6.15 -2.53 -0.02 1.46 16 17 N -0.59 -9.99 3.08 -163.97 -0.50 -10.50 16 18 C 0.61 10.68 7.65 -12.43 -0.10 10.59 16 19 O -0.53 -10.83 15.75 5.29 0.08 -10.75 16 20 C -0.02 -0.26 6.96 -82.74 -0.58 -0.84 16 21 N -0.23 -2.55 9.34 33.43 0.31 -2.24 16 22 N -0.37 -2.53 6.86 30.63 0.21 -2.32 16 23 H 0.46 1.03 8.96 -190.44 -1.71 -0.68 16 24 C -0.04 -0.29 12.06 -16.79 -0.20 -0.49 16 25 C 0.04 0.45 8.03 -39.26 -0.32 0.13 16 26 F -0.10 -1.43 17.03 2.25 0.04 -1.40 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.06 1.12 6.94 -51.93 -0.36 0.76 16 29 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.39 10.21 7.53 -40.82 -0.31 9.90 16 31 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.08 1.13 6.20 -51.93 -0.32 0.81 16 36 H 0.20 0.56 8.06 -52.49 -0.42 0.13 16 LS Contribution 309.81 15.07 4.67 4.67 Total: -1.00 -33.85 309.81 -7.05 -40.90 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -5.58 Total: 5.52 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: -1.70 Total: 3.98 kcal Atomic # 7 Polarization: -60.36 SS G_CDS: 0.47 Total: -59.89 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.08 Total: -10.75 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.85 -7.05 -40.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986848730.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.189 kcal (2) G-P(sol) polarization free energy of solvation -33.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds