Wall clock time and date at job start Tue Mar 31 2020 05:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.87209 * 2 1 4 4 C 1.54321 * 109.88370 * 121.17274 * 2 1 3 5 5 H 1.08997 * 110.72151 * 215.58704 * 4 2 1 6 6 N 1.46503 * 110.71777 * 338.86768 * 4 2 1 7 7 C 1.36943 * 119.99479 * 204.99631 * 6 4 2 8 8 H 1.07997 * 120.00246 * 0.02562 * 7 6 4 9 9 C 1.38816 * 119.99785 * 179.97438 * 7 6 4 10 10 N 1.31620 * 120.00111 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00033 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.47132 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.47163 * 120.00141 * 11 9 7 14 14 H 1.48491 * 109.47174 * 240.00673 * 11 9 7 15 15 C 1.55159 * 102.94088 * 97.22619 * 4 2 1 16 16 C 1.54907 * 101.58109 * 35.50304 * 15 4 2 17 17 N 1.47022 * 109.88102 * 238.98415 * 2 1 3 18 18 C 1.34777 * 125.64921 * 59.56474 * 17 2 1 19 19 O 1.21582 * 120.00171 * 359.97438 * 18 17 2 20 20 C 1.47616 * 119.99841 * 179.97438 * 18 17 2 21 21 N 1.31873 * 126.46237 * 0.02562 * 20 18 17 22 22 N 1.28459 * 110.15670 * 180.02562 * 21 20 18 23 23 H 0.96998 * 124.93644 * 180.02562 * 22 21 20 24 24 C 1.35730 * 110.13674 * 0.02562 * 22 21 20 25 25 C 1.35544 * 107.11291 * 359.72162 * 24 22 21 26 26 F 1.35099 * 127.24195 * 180.29857 * 25 24 22 27 27 H 1.09001 * 109.47002 * 179.56040 * 1 2 3 28 28 H 1.08993 * 109.46955 * 299.56478 * 1 2 3 29 29 H 1.09000 * 109.47050 * 59.56306 * 1 2 3 30 30 H 0.96993 * 120.00345 * 24.99227 * 6 4 2 31 31 H 0.96999 * 120.00005 * 179.97438 * 10 9 7 32 32 H 1.09001 * 111.00267 * 277.43032 * 15 4 2 33 33 H 1.08997 * 111.03848 * 153.59098 * 15 4 2 34 34 H 1.09002 * 110.36582 * 204.15347 * 16 15 4 35 35 H 1.08994 * 110.37053 * 81.82975 * 16 15 4 36 36 H 1.07996 * 126.44469 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7512 1.2417 5 1 2.9657 -0.2853 1.6178 6 7 1.0293 -0.8058 2.2863 7 6 1.3954 -0.9438 3.5987 8 1 2.4401 -1.0119 3.8635 9 6 0.4236 -0.9950 4.5886 10 7 -0.8497 -0.9114 4.2659 11 14 0.9230 -1.1825 6.3788 12 1 2.4032 -1.2531 6.4750 13 1 0.4321 -0.0152 7.1546 14 1 0.3308 -2.4277 6.9301 15 6 2.3520 -2.1704 0.6894 16 6 2.8569 -1.8487 -0.7393 17 7 2.0300 -0.7124 -1.1849 18 6 1.7754 -0.3810 -2.4663 19 8 1.0769 0.5818 -2.7179 20 6 2.3447 -1.1870 -3.5642 21 7 3.1140 -2.2506 -3.4382 22 7 3.4311 -2.7073 -4.5962 23 1 3.9900 -3.4844 -4.7529 24 6 2.8704 -1.9445 -5.5689 25 6 2.1638 -0.9665 -4.9511 26 9 1.4408 0.0136 -5.5358 27 1 -0.3633 -1.0277 -0.0079 28 1 -0.3633 0.5070 0.8938 29 1 -0.3633 0.5206 -0.8860 30 1 0.0910 -0.7441 2.0485 31 1 -1.5287 -0.9476 4.9576 32 1 1.4453 -2.7745 0.6565 33 1 3.1269 -2.6641 1.2757 34 1 2.7089 -2.7060 -1.3960 35 1 3.9092 -1.5656 -0.7151 36 1 2.9651 -2.0921 -6.6345 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986848736.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:03 Heat of formation + Delta-G solvation = 27.921717 kcal Electronic energy + Delta-G solvation = -22254.015952 eV Core-core repulsion = 18690.558870 eV Total energy + Delta-G solvation = -3563.457082 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.123 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.76574 -42.91255 -39.75954 -37.36081 -34.17796 -32.39460 -31.33696 -30.78152 -30.60224 -28.80777 -25.13670 -24.73193 -23.28611 -22.26000 -21.91052 -19.94541 -18.92086 -18.47587 -17.52936 -16.88876 -16.61898 -16.09020 -15.44346 -15.36953 -15.22075 -14.66981 -14.47248 -14.08811 -13.60881 -13.31884 -12.87215 -12.80152 -12.41575 -12.04434 -11.75223 -11.58373 -11.24503 -11.00467 -10.94948 -10.74423 -10.41348 -10.16804 -9.96968 -9.83286 -9.82145 -9.60162 -9.22282 -8.92622 -8.33354 -6.99905 -5.79731 -3.09310 1.25143 1.58899 2.35011 3.06399 3.36806 3.42436 3.48144 3.50422 3.94457 4.31244 4.53906 4.57248 4.75707 4.98238 5.17003 5.33222 5.49227 5.64484 5.66198 5.78144 5.90616 6.04809 6.15517 6.20203 6.29007 6.39090 6.49270 6.61526 6.63475 6.78238 6.88803 7.03801 7.33820 7.68840 7.76273 8.32059 8.38958 9.50487 10.05875 10.41073 11.42823 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.039089 B = 0.003817 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.146035 B = 7333.691699 C = 7834.141829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.128 3.872 3 H 0.074 0.926 4 C 0.174 3.826 5 H 0.067 0.933 6 N -0.716 5.716 7 C -0.244 4.244 8 H 0.072 0.928 9 C -0.011 4.011 10 N -0.931 5.931 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.292 1.292 15 C -0.155 4.155 16 C 0.100 3.900 17 N -0.593 5.593 18 C 0.608 3.392 19 O -0.527 6.527 20 C -0.018 4.018 21 N -0.228 5.228 22 N -0.374 5.374 23 H 0.455 0.545 24 C -0.040 4.040 25 C 0.036 3.964 26 F -0.100 7.100 27 H 0.055 0.945 28 H 0.081 0.919 29 H 0.060 0.940 30 H 0.391 0.609 31 H 0.256 0.744 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.064 0.936 36 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.294 -5.354 -19.676 22.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.024 3.976 3 H 0.092 0.908 4 C 0.062 3.938 5 H 0.085 0.915 6 N -0.359 5.359 7 C -0.375 4.375 8 H 0.090 0.910 9 C -0.207 4.207 10 N -0.579 5.579 11 Si 0.739 3.261 12 H -0.205 1.205 13 H -0.218 1.218 14 H -0.219 1.219 15 C -0.196 4.196 16 C -0.023 4.023 17 N -0.326 5.326 18 C 0.394 3.606 19 O -0.402 6.402 20 C -0.180 4.180 21 N -0.065 5.065 22 N -0.090 5.090 23 H 0.301 0.699 24 C -0.185 4.185 25 C 0.006 3.994 26 F -0.079 7.079 27 H 0.075 0.925 28 H 0.100 0.900 29 H 0.079 0.921 30 H 0.229 0.771 31 H 0.066 0.934 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.082 0.918 36 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 10.400 -5.409 -18.893 22.234 hybrid contribution -0.202 -0.020 0.004 0.203 sum 10.198 -5.430 -18.889 22.142 Atomic orbital electron populations 1.22018 0.94416 1.02467 1.02861 1.21953 0.95559 0.95881 0.84183 0.90790 1.21187 0.93212 0.92128 0.87278 0.91546 1.42665 1.04514 1.86968 1.01794 1.19309 0.92613 1.42435 0.83112 0.90972 1.24754 0.95228 1.02675 0.98061 1.69671 0.98893 1.57088 1.32209 0.86109 0.77525 0.77251 0.85217 1.20520 1.21850 1.21887 1.23578 1.01634 1.01146 0.93286 1.22522 0.94120 0.88817 0.96837 1.48380 1.49406 1.30450 1.04331 1.16330 0.80587 0.83407 0.80307 1.90829 1.38516 1.27928 1.82940 1.22275 1.04118 0.97819 0.93814 1.73831 1.14543 1.10943 1.07148 1.43124 1.38435 1.24885 1.02540 0.69870 1.22648 1.02933 0.95899 0.97047 1.17190 1.00541 0.91880 0.89768 1.91542 1.74813 1.58521 1.82991 0.92545 0.90015 0.92059 0.77107 0.93440 0.90812 0.90606 0.89783 0.91766 0.78602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.12 7.93 37.16 0.29 -2.83 16 2 C 0.13 2.37 3.48 -66.95 -0.23 2.13 16 3 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 4 C 0.17 3.41 3.48 -66.09 -0.23 3.18 16 5 H 0.07 1.29 8.09 -51.93 -0.42 0.87 16 6 N -0.72 -17.47 4.94 -51.65 -0.26 -17.73 16 7 C -0.24 -6.57 9.96 -15.06 -0.15 -6.72 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 10 N -0.93 -27.68 13.06 55.49 0.72 -26.96 16 11 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 14 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 15 C -0.16 -2.62 6.77 -24.58 -0.17 -2.79 16 16 C 0.10 1.45 6.15 -2.53 -0.02 1.44 16 17 N -0.59 -9.98 3.08 -164.20 -0.51 -10.48 16 18 C 0.61 10.67 7.63 -12.43 -0.09 10.58 16 19 O -0.53 -10.80 15.57 5.29 0.08 -10.72 16 20 C -0.02 -0.26 6.96 -82.74 -0.58 -0.84 16 21 N -0.23 -2.55 9.33 33.43 0.31 -2.24 16 22 N -0.37 -2.53 6.86 30.63 0.21 -2.32 16 23 H 0.46 1.03 8.96 -190.45 -1.71 -0.68 16 24 C -0.04 -0.29 12.06 -16.79 -0.20 -0.49 16 25 C 0.04 0.45 8.03 -39.26 -0.32 0.13 16 26 F -0.10 -1.43 17.03 2.25 0.04 -1.40 16 27 H 0.06 1.12 8.01 -51.93 -0.42 0.71 16 28 H 0.08 1.72 6.82 -51.93 -0.35 1.36 16 29 H 0.06 1.20 6.74 -51.93 -0.35 0.85 16 30 H 0.39 10.10 5.06 -40.82 -0.21 9.90 16 31 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.08 1.13 6.20 -51.93 -0.32 0.81 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.20 0.56 8.06 -52.49 -0.42 0.13 16 LS Contribution 305.34 15.07 4.60 4.60 Total: -1.00 -33.90 305.34 -7.04 -40.94 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -5.44 Total: 5.93 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: -1.79 Total: 3.40 kcal Atomic # 7 Polarization: -60.21 SS G_CDS: 0.49 Total: -59.73 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.08 Total: -10.72 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.90 -7.04 -40.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986848736.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.861 kcal (2) G-P(sol) polarization free energy of solvation -33.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds