Wall clock time and date at job start Tue Mar 31 2020 05:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.87378 * 2 1 4 4 C 1.54323 * 109.88139 * 121.01725 * 2 1 3 5 5 H 1.08999 * 110.72478 * 23.40044 * 4 2 1 6 6 N 1.46501 * 110.71992 * 260.30186 * 4 2 1 7 7 C 1.36935 * 120.00203 * 155.00230 * 6 4 2 8 8 H 1.08004 * 119.99787 * 0.02562 * 7 6 4 9 9 C 1.38811 * 119.99906 * 180.02562 * 7 6 4 10 10 N 1.31614 * 120.00387 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99603 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47451 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.46557 * 120.00410 * 11 9 7 14 14 H 1.48496 * 109.47390 * 239.99958 * 11 9 7 15 15 C 1.55164 * 102.94014 * 141.76813 * 4 2 1 16 16 C 1.54904 * 101.57813 * 324.49251 * 15 4 2 17 17 N 1.47021 * 110.01027 * 238.90147 * 2 1 3 18 18 C 1.34777 * 125.64945 * 61.54400 * 17 2 1 19 19 O 1.21581 * 119.99662 * 0.02562 * 18 17 2 20 20 C 1.47617 * 120.00059 * 179.97438 * 18 17 2 21 21 N 1.31869 * 126.45957 * 0.03173 * 20 18 17 22 22 N 1.28473 * 110.15493 * 179.97438 * 21 20 18 23 23 H 0.96993 * 124.93225 * 179.97438 * 22 21 20 24 24 C 1.35732 * 110.12930 * 359.97438 * 22 21 20 25 25 C 1.35540 * 107.12247 * 359.72633 * 24 22 21 26 26 F 1.35102 * 127.24702 * 180.25866 * 25 24 22 27 27 H 1.09002 * 109.46917 * 299.29811 * 1 2 3 28 28 H 1.08999 * 109.47171 * 59.29872 * 1 2 3 29 29 H 1.08998 * 109.47003 * 179.29921 * 1 2 3 30 30 H 0.97006 * 120.00053 * 335.00172 * 6 4 2 31 31 H 0.97001 * 120.00526 * 179.97438 * 10 9 7 32 32 H 1.08991 * 111.00800 * 82.57191 * 15 4 2 33 33 H 1.09000 * 111.00097 * 206.38576 * 15 4 2 34 34 H 1.09002 * 110.36826 * 155.85543 * 16 15 4 35 35 H 1.09001 * 110.36870 * 278.06153 * 16 15 4 36 36 H 1.08000 * 126.43400 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7478 1.2437 5 1 1.3062 -1.4457 1.6187 6 7 2.4482 0.1990 2.2902 7 6 2.4491 -0.1923 3.6024 8 1 2.1603 -1.1991 3.8659 9 6 2.8213 0.7051 4.5940 10 7 3.1728 1.9321 4.2729 11 14 2.8219 0.1714 6.3842 12 1 2.3894 -1.2461 6.4784 13 1 4.1917 0.3087 6.9410 14 1 1.8857 1.0273 7.1562 15 6 3.2901 -1.5101 0.6953 16 6 2.8196 -1.8769 -0.7342 17 7 2.0331 -0.7135 -1.1829 18 6 1.8116 -0.3625 -2.4652 19 8 1.1445 0.6217 -2.7194 20 6 2.3798 -1.1723 -3.5608 21 7 3.1179 -2.2574 -3.4319 22 7 3.4437 -2.7113 -4.5888 23 1 3.9849 -3.5012 -4.7432 24 6 2.9203 -1.9248 -5.5634 25 6 2.2285 -0.9346 -4.9486 26 9 1.5423 0.0700 -5.5361 27 1 -0.3633 0.5029 0.8962 28 1 -0.3633 0.5247 -0.8836 29 1 -0.3633 -1.0276 -0.0126 30 1 2.7080 1.1032 2.0535 31 1 3.4326 2.5593 4.9658 32 1 4.1665 -0.8628 0.6642 33 1 3.4892 -2.4058 1.2836 34 1 3.6778 -2.0299 -1.3885 35 1 2.1972 -2.7715 -0.7109 36 1 3.0301 -2.0649 -6.6286 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986848739.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:06 Heat of formation + Delta-G solvation = 21.069020 kcal Electronic energy + Delta-G solvation = -22149.420909 eV Core-core repulsion = 18585.666672 eV Total energy + Delta-G solvation = -3563.754237 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.123 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.76731 -42.91334 -39.72159 -37.29939 -34.12046 -32.43580 -31.31161 -30.86250 -30.67762 -29.00995 -25.15375 -24.66285 -23.03586 -22.26202 -21.75605 -20.16168 -19.37008 -18.48769 -17.23543 -16.86923 -16.62521 -16.08838 -15.83527 -15.29355 -14.93864 -14.68178 -14.51084 -13.86968 -13.58892 -13.33237 -12.90473 -12.81238 -12.67541 -12.07325 -11.82364 -11.66627 -11.23990 -11.00544 -10.97189 -10.78237 -10.54326 -10.19032 -10.02884 -9.86393 -9.82108 -9.68325 -9.22611 -8.92463 -8.34106 -7.00923 -5.79808 -3.10044 1.24783 1.58629 2.34706 3.05284 3.36103 3.42178 3.47817 3.50180 3.93950 4.30872 4.53669 4.56651 4.75286 4.97924 5.14953 5.32498 5.44609 5.60316 5.67949 5.76671 5.88492 5.99152 6.11654 6.14920 6.20283 6.37440 6.46938 6.52460 6.64643 6.67296 6.79089 6.96427 7.33356 7.67988 7.75344 8.31095 8.37689 9.49076 10.03892 10.38768 11.42466 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.036069 B = 0.003783 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.096869 B = 7399.709085 C = 7821.923139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.126 3.874 3 H 0.080 0.920 4 C 0.177 3.823 5 H 0.068 0.932 6 N -0.714 5.714 7 C -0.243 4.243 8 H 0.073 0.927 9 C -0.010 4.010 10 N -0.930 5.930 11 Si 0.907 3.093 12 H -0.280 1.280 13 H -0.292 1.292 14 H -0.291 1.291 15 C -0.157 4.157 16 C 0.101 3.899 17 N -0.592 5.592 18 C 0.608 3.392 19 O -0.527 6.527 20 C -0.018 4.018 21 N -0.228 5.228 22 N -0.374 5.374 23 H 0.455 0.545 24 C -0.040 4.040 25 C 0.036 3.964 26 F -0.100 7.100 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.050 0.950 30 H 0.386 0.614 31 H 0.256 0.744 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.064 0.936 36 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.960 -12.054 -19.654 23.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.023 3.977 3 H 0.098 0.902 4 C 0.065 3.935 5 H 0.086 0.914 6 N -0.354 5.354 7 C -0.374 4.374 8 H 0.091 0.909 9 C -0.207 4.207 10 N -0.577 5.577 11 Si 0.739 3.261 12 H -0.205 1.205 13 H -0.219 1.219 14 H -0.218 1.218 15 C -0.199 4.199 16 C -0.022 4.022 17 N -0.325 5.325 18 C 0.393 3.607 19 O -0.402 6.402 20 C -0.180 4.180 21 N -0.065 5.065 22 N -0.090 5.090 23 H 0.301 0.699 24 C -0.185 4.185 25 C 0.006 3.994 26 F -0.079 7.079 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.220 0.780 31 H 0.066 0.934 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.082 0.918 36 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 0.971 -12.182 -18.869 22.481 hybrid contribution 0.094 0.227 -0.007 0.246 sum 1.065 -11.955 -18.876 22.369 Atomic orbital electron populations 1.22050 0.94725 1.01663 1.02839 1.22023 0.94571 0.97005 0.84137 0.90211 1.21250 0.93662 0.91572 0.87031 0.91402 1.42358 1.79541 1.11658 1.01858 1.19266 1.38422 0.96798 0.82878 0.90914 1.24760 1.01996 0.95842 0.98068 1.69674 1.51430 1.04460 1.32165 0.86117 0.77188 0.77619 0.85224 1.20498 1.21869 1.21828 1.23589 1.01270 1.01674 0.93326 1.22519 0.95269 0.87671 0.96746 1.48340 1.51114 1.28766 1.04309 1.16336 0.80523 0.83476 0.80319 1.90831 1.40020 1.26523 1.82860 1.22267 1.04702 0.97257 0.93789 1.73834 1.14265 1.11131 1.07230 1.43127 1.39556 1.23769 1.02539 0.69865 1.22646 1.03546 0.95286 0.97022 1.17189 1.01414 0.91040 0.89737 1.91543 1.76773 1.56689 1.82859 0.90948 0.91929 0.93072 0.77971 0.93434 0.90764 0.90575 0.89767 0.91813 0.78597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 9.11 37.16 0.34 -2.35 16 2 C 0.13 2.33 3.20 -66.95 -0.21 2.12 16 3 H 0.08 1.64 7.72 -51.93 -0.40 1.24 16 4 C 0.18 3.45 3.13 -66.09 -0.21 3.24 16 5 H 0.07 1.32 7.80 -51.93 -0.41 0.91 16 6 N -0.71 -17.47 5.23 -51.65 -0.27 -17.74 16 7 C -0.24 -6.53 9.96 -15.06 -0.15 -6.68 16 8 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 9 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 10 N -0.93 -27.75 13.06 55.49 0.72 -27.02 16 11 Si 0.91 21.98 29.55 -169.99 -5.02 16.96 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 14 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 15 C -0.16 -2.65 6.78 -24.58 -0.17 -2.82 16 16 C 0.10 1.47 6.15 -2.53 -0.02 1.45 16 17 N -0.59 -9.97 3.07 -164.20 -0.50 -10.48 16 18 C 0.61 10.68 7.65 -12.43 -0.10 10.58 16 19 O -0.53 -10.83 15.72 5.29 0.08 -10.74 16 20 C -0.02 -0.26 6.96 -82.74 -0.58 -0.83 16 21 N -0.23 -2.55 9.33 33.43 0.31 -2.23 16 22 N -0.37 -2.53 6.87 30.63 0.21 -2.32 16 23 H 0.46 1.02 8.96 -190.44 -1.71 -0.69 16 24 C -0.04 -0.29 12.06 -16.79 -0.20 -0.49 16 25 C 0.04 0.45 8.03 -39.26 -0.32 0.13 16 26 F -0.10 -1.43 17.03 2.25 0.04 -1.39 16 27 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 28 H 0.06 1.13 6.90 -51.93 -0.36 0.77 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.39 10.20 7.56 -40.82 -0.31 9.89 16 31 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.08 1.13 6.19 -51.93 -0.32 0.81 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.20 0.55 8.06 -52.49 -0.42 0.13 16 LS Contribution 309.74 15.07 4.67 4.67 Total: -1.00 -33.87 309.74 -7.05 -40.92 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -5.58 Total: 5.42 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: -1.70 Total: 3.96 kcal Atomic # 7 Polarization: -60.26 SS G_CDS: 0.47 Total: -59.79 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.08 Total: -10.74 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.04 Total: -1.39 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.87 -7.05 -40.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986848739.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.988 kcal (2) G-P(sol) polarization free energy of solvation -33.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds