Wall clock time and date at job start Tue Mar 31 2020 05:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.99368 * 2 1 4 4 C 1.54328 * 109.99388 * 238.96249 * 2 1 3 5 5 H 1.09002 * 110.85545 * 100.19628 * 4 2 1 6 6 N 1.46504 * 110.51383 * 336.97264 * 4 2 1 7 7 C 1.36933 * 119.99998 * 157.03194 * 6 4 2 8 8 H 1.08004 * 119.99904 * 0.02562 * 7 6 4 9 9 C 1.38811 * 120.00508 * 180.02562 * 7 6 4 10 10 N 1.31624 * 119.99564 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00623 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.47128 * 59.99715 * 11 9 7 13 13 H 1.48497 * 109.47391 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.46901 * 300.00186 * 11 9 7 15 15 C 1.55156 * 103.02046 * 218.66485 * 4 2 1 16 16 C 1.54913 * 101.58526 * 35.30112 * 15 4 2 17 17 N 1.47019 * 109.88174 * 121.08836 * 2 1 3 18 18 C 1.34777 * 125.65370 * 298.39798 * 17 2 1 19 19 O 1.21589 * 119.99612 * 359.71777 * 18 17 2 20 20 C 1.47611 * 120.00209 * 179.44069 * 18 17 2 21 21 N 1.31872 * 126.45973 * 0.02762 * 20 18 17 22 22 N 1.28468 * 110.15413 * 179.97438 * 21 20 18 23 23 H 0.97001 * 124.93216 * 179.97438 * 22 21 20 24 24 C 1.35728 * 110.13320 * 359.97438 * 22 21 20 25 25 C 1.35542 * 107.11950 * 359.76251 * 24 22 21 26 26 F 1.35102 * 127.24355 * 180.26010 * 25 24 22 27 27 H 1.08999 * 109.47274 * 306.15428 * 1 2 3 28 28 H 1.09000 * 109.47109 * 66.15957 * 1 2 3 29 29 H 1.08998 * 109.46535 * 186.16122 * 1 2 3 30 30 H 0.97000 * 119.99979 * 337.02633 * 6 4 2 31 31 H 0.96998 * 119.99962 * 180.02562 * 10 9 7 32 32 H 1.09003 * 111.00541 * 277.23061 * 15 4 2 33 33 H 1.08998 * 111.04117 * 153.39351 * 15 4 2 34 34 H 1.08997 * 110.37242 * 204.15482 * 16 15 4 35 35 H 1.09006 * 110.36494 * 81.82832 * 16 15 4 36 36 H 1.08003 * 126.44188 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0577 -0.7478 -1.2426 5 1 2.3599 -0.0450 -2.0192 6 7 1.0466 -1.6790 -1.7492 7 6 1.0845 -2.0864 -3.0560 8 1 1.8601 -1.7215 -3.7131 9 6 0.1262 -2.9684 -3.5363 10 7 -0.8187 -3.4135 -2.7353 11 14 0.1783 -3.5247 -5.3187 12 1 1.4662 -4.2147 -5.5844 13 1 -0.9462 -4.4590 -5.5788 14 1 0.0569 -2.3429 -6.2098 15 6 3.2864 -1.5183 -0.6913 16 6 2.8101 -1.8824 0.7371 17 7 2.0300 -0.7139 1.1840 18 6 1.8074 -0.3618 2.4658 19 8 1.1458 0.6265 2.7186 20 6 2.3616 -1.1795 3.5627 21 7 3.0885 -2.2724 3.4354 22 7 3.4047 -2.7310 4.5930 23 1 3.9363 -3.5273 4.7487 24 6 2.8871 -1.9394 5.5665 25 6 2.2187 -0.9342 4.9500 26 9 1.5537 0.0855 5.5359 27 1 -0.3634 0.6063 0.8298 28 1 -0.3633 0.4154 -0.9400 29 1 -0.3632 -1.0217 0.1103 30 1 0.3503 -2.0071 -1.1589 31 1 -1.4882 -4.0301 -3.0707 32 1 4.1671 -0.8767 -0.6578 33 1 3.4815 -2.4155 -1.2787 34 1 3.6657 -2.0409 1.3935 35 1 2.1803 -2.7717 0.7117 36 1 2.9921 -2.0811 6.6320 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986848741.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:08 Heat of formation + Delta-G solvation = 26.394263 kcal Electronic energy + Delta-G solvation = -22467.569900 eV Core-core repulsion = 18904.046583 eV Total energy + Delta-G solvation = -3563.523317 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.123 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.70232 -42.82825 -39.69341 -37.31775 -33.96472 -32.33085 -31.24911 -30.75365 -30.61066 -28.74139 -25.15025 -24.56363 -23.46466 -22.20876 -21.69683 -19.91986 -18.94490 -18.33351 -17.44415 -16.71134 -16.54396 -16.01496 -15.90462 -15.19621 -14.82358 -14.63250 -14.44361 -13.83737 -13.73613 -13.17197 -12.75352 -12.72966 -12.56128 -12.21123 -11.68949 -11.37636 -11.07399 -10.94678 -10.84686 -10.60181 -10.56355 -10.22015 -10.04047 -9.75936 -9.73731 -9.56832 -9.14866 -8.91963 -8.23762 -6.99410 -5.78875 -3.08271 1.34042 1.66376 2.43379 3.15735 3.42870 3.45242 3.47855 3.48621 4.03419 4.38744 4.57054 4.61563 4.83891 5.05272 5.20231 5.37498 5.54717 5.66762 5.73211 5.85217 5.93578 6.10233 6.12858 6.29472 6.43644 6.48904 6.56104 6.60533 6.67806 6.82577 6.92602 7.05958 7.42550 7.68319 7.84888 8.38669 8.40613 9.50956 10.06863 10.42208 11.43364 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.029198 B = 0.004260 C = 0.004073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.745791 B = 6570.689933 C = 6872.046138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.127 3.873 3 H 0.073 0.927 4 C 0.172 3.828 5 H 0.070 0.930 6 N -0.714 5.714 7 C -0.243 4.243 8 H 0.071 0.929 9 C -0.010 4.010 10 N -0.931 5.931 11 Si 0.907 3.093 12 H -0.286 1.286 13 H -0.292 1.292 14 H -0.286 1.286 15 C -0.161 4.161 16 C 0.108 3.892 17 N -0.591 5.591 18 C 0.608 3.392 19 O -0.531 6.531 20 C -0.018 4.018 21 N -0.226 5.226 22 N -0.374 5.374 23 H 0.455 0.545 24 C -0.041 4.041 25 C 0.035 3.965 26 F -0.101 7.101 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.388 0.612 31 H 0.256 0.744 32 H 0.060 0.940 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.699 1.105 15.767 19.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.024 3.976 3 H 0.091 0.909 4 C 0.060 3.940 5 H 0.088 0.912 6 N -0.356 5.356 7 C -0.374 4.374 8 H 0.089 0.911 9 C -0.206 4.206 10 N -0.579 5.579 11 Si 0.738 3.262 12 H -0.213 1.213 13 H -0.218 1.218 14 H -0.212 1.212 15 C -0.202 4.202 16 C -0.014 4.014 17 N -0.324 5.324 18 C 0.394 3.606 19 O -0.407 6.407 20 C -0.180 4.180 21 N -0.062 5.062 22 N -0.090 5.090 23 H 0.301 0.699 24 C -0.186 4.186 25 C 0.005 3.995 26 F -0.079 7.079 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.225 0.775 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.106 0.894 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 10.726 0.984 14.987 18.456 hybrid contribution -0.353 -0.427 0.150 0.574 sum 10.373 0.558 15.137 18.359 Atomic orbital electron populations 1.21917 0.94053 1.02676 1.02029 1.22056 0.95539 0.95679 0.84326 0.90864 1.21224 0.89195 0.91678 0.91924 0.91215 1.42548 1.30965 1.51972 1.10120 1.19197 1.09685 1.21452 0.87089 0.91085 1.24735 0.97754 1.00194 0.97917 1.69657 1.17095 1.36424 1.34709 0.86274 0.76879 0.78185 0.84842 1.21302 1.21781 1.21241 1.23540 0.99085 1.02307 0.95290 1.22443 0.95165 0.88027 0.95803 1.48445 1.51273 1.28433 1.04247 1.16315 0.80387 0.83561 0.80372 1.90817 1.40178 1.26694 1.82991 1.22266 1.05007 0.96978 0.93786 1.73868 1.14353 1.10869 1.07115 1.43134 1.39991 1.23315 1.02541 0.69873 1.22636 1.04161 0.94783 0.97011 1.17184 1.02059 0.90453 0.89765 1.91534 1.77950 1.55511 1.82950 0.92704 0.91051 0.91828 0.77505 0.93409 0.92181 0.89444 0.90166 0.91124 0.78648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 8.21 37.16 0.31 -2.62 16 2 C 0.13 2.34 3.42 -66.95 -0.23 2.11 16 3 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 4 C 0.17 3.32 3.48 -66.09 -0.23 3.09 16 5 H 0.07 1.32 8.11 -51.93 -0.42 0.90 16 6 N -0.71 -17.06 4.59 -51.65 -0.24 -17.30 16 7 C -0.24 -6.45 9.97 -15.06 -0.15 -6.60 16 8 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 9 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 10 N -0.93 -27.51 13.06 55.49 0.72 -26.79 16 11 Si 0.91 21.86 29.55 -169.99 -5.02 16.83 16 12 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 14 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 15 C -0.16 -2.69 6.77 -24.58 -0.17 -2.86 16 16 C 0.11 1.77 6.12 -2.52 -0.02 1.75 16 17 N -0.59 -10.46 3.06 -164.19 -0.50 -10.96 16 18 C 0.61 11.15 7.64 -12.44 -0.10 11.06 16 19 O -0.53 -11.12 15.82 5.29 0.08 -11.04 16 20 C -0.02 -0.28 6.96 -82.74 -0.58 -0.86 16 21 N -0.23 -2.82 9.34 33.43 0.31 -2.51 16 22 N -0.37 -2.96 6.86 30.64 0.21 -2.75 16 23 H 0.46 1.57 8.96 -190.44 -1.71 -0.14 16 24 C -0.04 -0.33 12.06 -16.79 -0.20 -0.54 16 25 C 0.04 0.47 8.03 -39.26 -0.32 0.15 16 26 F -0.10 -1.51 17.03 2.25 0.04 -1.47 16 27 H 0.05 1.07 7.07 -51.93 -0.37 0.70 16 28 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 29 H 0.06 1.37 6.52 -51.93 -0.34 1.04 16 30 H 0.39 10.05 5.69 -40.82 -0.23 9.81 16 31 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 34 H 0.08 1.16 6.21 -51.93 -0.32 0.84 16 35 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.20 0.71 8.06 -52.48 -0.42 0.29 16 LS Contribution 306.29 15.07 4.62 4.62 Total: -1.00 -33.34 306.29 -7.02 -40.36 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -5.47 Total: 6.69 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: -1.77 Total: 4.32 kcal Atomic # 7 Polarization: -60.81 SS G_CDS: 0.51 Total: -60.31 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.08 Total: -11.04 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.34 -7.02 -40.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986848741.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.754 kcal (2) G-P(sol) polarization free energy of solvation -33.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds