Wall clock time and date at job start Tue Mar 31 2020 05:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34780 * 120.00070 * 2 1 4 4 O 1.21572 * 120.00152 * 175.93372 * 3 2 1 5 5 C 1.47614 * 119.99646 * 355.93486 * 3 2 1 6 6 N 1.31869 * 126.46084 * 6.03571 * 5 3 2 7 7 N 1.28472 * 110.15462 * 179.97438 * 6 5 3 8 8 H 0.96998 * 124.93322 * 180.02562 * 7 6 5 9 9 C 1.35730 * 110.13483 * 0.02562 * 7 6 5 10 10 C 1.35547 * 107.11275 * 359.72115 * 9 7 6 11 11 F 1.35097 * 127.23847 * 180.29511 * 10 9 7 12 12 C 1.46499 * 119.99958 * 179.97438 * 2 1 3 13 13 H 1.09003 * 110.63852 * 178.31135 * 12 2 1 14 14 C 1.55157 * 110.71911 * 54.98098 * 12 2 1 15 15 C 1.55135 * 101.48499 * 205.96683 * 14 12 2 16 16 N 1.47429 * 104.71948 * 37.29148 * 15 14 12 17 17 C 1.36938 * 125.64775 * 155.81633 * 16 15 14 18 18 H 1.07999 * 120.00143 * 190.49207 * 17 16 15 19 19 C 1.38818 * 119.99636 * 10.49283 * 17 16 15 20 20 N 1.31618 * 120.00172 * 8.87797 * 19 17 16 21 21 Si 1.86808 * 119.99719 * 188.88217 * 19 17 16 22 22 H 1.48497 * 109.46866 * 265.00451 * 21 19 17 23 23 H 1.48499 * 109.46920 * 25.00539 * 21 19 17 24 24 H 1.48493 * 109.47044 * 145.00525 * 21 19 17 25 25 C 1.47022 * 108.70708 * 335.55534 * 16 15 14 26 26 H 1.08995 * 109.47461 * 275.77771 * 1 2 3 27 27 H 1.08998 * 109.47217 * 35.77927 * 1 2 3 28 28 H 1.09000 * 109.47054 * 155.77423 * 1 2 3 29 29 H 1.07994 * 126.44240 * 180.02562 * 9 7 6 30 30 H 1.09000 * 111.00291 * 324.20466 * 14 12 2 31 31 H 1.08994 * 111.00901 * 88.02596 * 14 12 2 32 32 H 1.09000 * 110.49655 * 278.45833 * 15 14 12 33 33 H 1.08994 * 110.34292 * 156.05398 * 15 14 12 34 34 H 0.96995 * 120.00004 * 180.02562 * 20 19 17 35 35 H 1.08998 * 109.88346 * 120.69881 * 25 16 15 36 36 H 1.09000 * 109.88093 * 241.87098 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3523 1.1686 0.0747 5 6 1.4036 2.4440 -0.0906 6 7 0.0941 2.5977 -0.0649 7 7 -0.2075 3.8424 -0.1652 8 1 -1.1106 4.1966 -0.1689 9 6 0.9209 4.5900 -0.2652 10 6 1.9715 3.7350 -0.2156 11 9 3.2842 4.0486 -0.2753 12 6 2.1975 -1.2687 0.0006 13 1 3.2726 -1.0917 -0.0296 14 6 1.7507 -2.1610 -1.1875 15 6 2.0692 -3.5793 -0.6455 16 7 1.7324 -3.5166 0.7884 17 6 1.4004 -4.5853 1.5777 18 1 1.0067 -4.4221 2.5700 19 6 1.5699 -5.8784 1.1022 20 7 2.2084 -6.0849 -0.0301 21 14 0.8918 -7.3256 2.0695 22 1 1.9590 -7.8840 2.9380 23 1 -0.2436 -6.8699 2.9111 24 1 0.4211 -8.3731 1.1281 25 6 1.8182 -2.1176 1.2323 26 1 -0.3634 0.1034 1.0224 27 1 -0.3633 0.8337 -0.6008 28 1 -0.3633 -0.9372 -0.4217 29 1 0.9721 5.6645 -0.3609 30 1 0.6850 -2.0446 -1.3844 31 1 2.3369 -1.9448 -2.0806 32 1 3.1264 -3.8097 -0.7771 33 1 1.4522 -4.3243 -1.1478 34 1 2.3265 -6.9884 -0.3625 35 1 0.8540 -1.7930 1.6235 36 1 2.5848 -2.0189 2.0008 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033395631.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:38 Heat of formation + Delta-G solvation = 46.068625 kcal Electronic energy + Delta-G solvation = -22202.410516 eV Core-core repulsion = 18639.740344 eV Total energy + Delta-G solvation = -3562.670173 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.123 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.78029 -42.95768 -39.60505 -37.24523 -34.77832 -32.49935 -31.66658 -30.83982 -29.15482 -27.58258 -26.60203 -24.85779 -23.68806 -22.17924 -20.45686 -20.23013 -19.30254 -18.49678 -17.12304 -16.89104 -16.61867 -16.10343 -15.90801 -15.29231 -14.93342 -14.65524 -14.51160 -14.04323 -13.88509 -13.20451 -12.91691 -12.83428 -12.30667 -12.16110 -11.85028 -11.58143 -10.92952 -10.87760 -10.83456 -10.78924 -10.41954 -10.06669 -9.91716 -9.81986 -9.80576 -9.64337 -9.24151 -8.57348 -8.29144 -6.77947 -5.72499 -3.05773 1.21121 1.56610 2.32583 3.05714 3.30362 3.41550 3.47049 3.49156 3.91428 4.29147 4.51557 4.52409 4.73578 4.98242 5.42707 5.44613 5.46902 5.58650 5.71215 5.82663 5.85834 5.98251 6.16187 6.23319 6.38998 6.47000 6.58207 6.62406 6.75573 7.01583 7.31931 7.50025 7.56707 7.63707 7.79848 8.25428 8.30058 9.21079 9.82629 10.50145 11.40496 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.039915 B = 0.003694 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.325166 B = 7579.020294 C = 7859.275475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.584 5.584 3 C 0.593 3.407 4 O -0.528 6.528 5 C -0.019 4.019 6 N -0.228 5.228 7 N -0.376 5.376 8 H 0.455 0.545 9 C -0.039 4.039 10 C 0.037 3.963 11 F -0.100 7.100 12 C 0.127 3.873 13 H 0.106 0.894 14 C -0.155 4.155 15 C 0.175 3.825 16 N -0.601 5.601 17 C -0.229 4.229 18 H 0.076 0.924 19 C -0.006 4.006 20 N -0.918 5.918 21 Si 0.911 3.089 22 H -0.289 1.289 23 H -0.281 1.281 24 H -0.290 1.290 25 C 0.130 3.870 26 H 0.056 0.944 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.197 0.803 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.030 0.970 33 H 0.072 0.928 34 H 0.253 0.747 35 H 0.029 0.971 36 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.454 21.920 -2.993 23.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.315 5.315 3 C 0.378 3.622 4 O -0.403 6.403 5 C -0.181 4.181 6 N -0.065 5.065 7 N -0.091 5.091 8 H 0.301 0.699 9 C -0.184 4.184 10 C 0.007 3.993 11 F -0.078 7.078 12 C 0.024 3.976 13 H 0.124 0.876 14 C -0.194 4.194 15 C 0.050 3.950 16 N -0.328 5.328 17 C -0.357 4.357 18 H 0.094 0.906 19 C -0.203 4.203 20 N -0.565 5.565 21 Si 0.742 3.258 22 H -0.216 1.216 23 H -0.206 1.206 24 H -0.216 1.216 25 C 0.003 3.997 26 H 0.074 0.926 27 H 0.108 0.892 28 H 0.096 0.904 29 H 0.214 0.786 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.048 0.952 33 H 0.090 0.910 34 H 0.063 0.937 35 H 0.047 0.953 36 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -7.702 21.069 -2.877 22.616 hybrid contribution 0.095 0.011 0.464 0.474 sum -7.607 21.080 -2.413 22.540 Atomic orbital electron populations 1.22120 0.78839 1.03747 1.02429 1.47693 1.07619 1.05296 1.70874 1.16815 0.86187 0.81566 0.77600 1.90833 1.12626 1.86286 1.50525 1.22300 0.89706 0.95121 1.10940 1.73928 1.15020 0.99669 1.17903 1.43212 1.09511 1.03731 1.52673 0.69902 1.22655 0.85651 0.99368 1.10708 1.17185 0.79913 0.91710 1.10520 1.91544 1.29401 1.92640 1.94256 1.22311 0.97201 0.80925 0.97185 0.87604 1.23451 1.00765 0.98660 0.96507 1.21444 0.98955 0.90475 0.84124 1.44435 1.81354 1.00854 1.06167 1.19020 1.35187 0.83900 0.97590 0.90621 1.24835 1.00221 0.97272 0.97983 1.69947 1.44860 1.20037 1.21658 0.86116 0.78563 0.82366 0.78799 1.21608 1.20606 1.21631 1.21526 0.98071 0.86241 0.93866 0.92585 0.89249 0.90379 0.78611 0.91508 0.91802 0.95162 0.90961 0.93674 0.95339 0.95564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.99 8.40 59.85 0.50 1.49 16 2 N -0.58 -9.81 2.88 -173.04 -0.50 -10.31 16 3 C 0.59 10.33 7.67 -12.43 -0.10 10.23 16 4 O -0.53 -10.93 16.06 5.30 0.09 -10.84 16 5 C -0.02 -0.26 6.83 -82.74 -0.56 -0.83 16 6 N -0.23 -2.42 8.72 33.43 0.29 -2.13 16 7 N -0.38 -2.37 6.86 30.63 0.21 -2.16 16 8 H 0.45 0.81 8.96 -190.44 -1.71 -0.89 16 9 C -0.04 -0.27 12.06 -16.79 -0.20 -0.47 16 10 C 0.04 0.44 8.03 -39.26 -0.32 0.13 16 11 F -0.10 -1.41 17.05 2.25 0.04 -1.38 16 12 C 0.13 2.46 3.35 -66.10 -0.22 2.24 16 13 H 0.11 2.21 7.00 -51.93 -0.36 1.84 16 14 C -0.15 -2.98 6.60 -24.46 -0.16 -3.14 16 15 C 0.18 4.28 5.43 -2.40 -0.01 4.27 16 16 N -0.60 -15.65 3.39 -169.93 -0.58 -16.23 16 17 C -0.23 -6.45 10.24 -15.06 -0.15 -6.60 16 18 H 0.08 2.07 7.84 -52.49 -0.41 1.66 16 19 C -0.01 -0.18 5.41 -17.43 -0.09 -0.28 16 20 N -0.92 -27.07 10.68 55.49 0.59 -26.48 16 21 Si 0.91 22.13 29.56 -169.99 -5.03 17.11 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 C 0.13 2.86 6.88 -3.06 -0.02 2.84 16 26 H 0.06 0.75 8.09 -51.93 -0.42 0.33 16 27 H 0.09 1.07 5.29 -51.93 -0.27 0.80 16 28 H 0.08 1.11 6.13 -51.93 -0.32 0.79 16 29 H 0.20 0.50 8.06 -52.49 -0.42 0.08 16 30 H 0.07 1.21 6.15 -51.93 -0.32 0.89 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 33 H 0.07 1.93 6.94 -51.93 -0.36 1.56 16 34 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.03 0.61 7.07 -51.93 -0.37 0.24 16 36 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 301.62 15.07 4.55 4.55 Total: -1.00 -35.01 301.62 -7.04 -42.06 By element: Atomic # 1 Polarization: 1.30 SS G_CDS: -5.36 Total: -4.07 kcal Atomic # 6 Polarization: 11.22 SS G_CDS: -1.34 Total: 9.88 kcal Atomic # 7 Polarization: -57.32 SS G_CDS: 0.02 Total: -57.30 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.09 Total: -10.84 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.03 Total: 17.11 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -35.01 -7.04 -42.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033395631.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.124 kcal (2) G-P(sol) polarization free energy of solvation -35.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds