Wall clock time and date at job start Tue Mar 31 2020 05:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34780 * 120.00070 * 2 1 4 4 O 1.21572 * 120.00152 * 175.93372 * 3 2 1 5 5 C 1.47614 * 119.99646 * 355.93486 * 3 2 1 6 6 N 1.31869 * 126.46084 * 6.03571 * 5 3 2 7 7 N 1.28472 * 110.15462 * 179.97438 * 6 5 3 8 8 H 0.96998 * 124.93322 * 180.02562 * 7 6 5 9 9 C 1.35730 * 110.13483 * 0.02562 * 7 6 5 10 10 C 1.35547 * 107.11275 * 359.72115 * 9 7 6 11 11 F 1.35097 * 127.23847 * 180.29511 * 10 9 7 12 12 C 1.46499 * 119.99958 * 179.97438 * 2 1 3 13 13 H 1.09003 * 110.63852 * 178.31135 * 12 2 1 14 14 C 1.55157 * 110.71911 * 54.98098 * 12 2 1 15 15 C 1.55135 * 101.48499 * 205.96683 * 14 12 2 16 16 N 1.47429 * 104.71948 * 37.29148 * 15 14 12 17 17 C 1.36938 * 125.64775 * 155.81633 * 16 15 14 18 18 H 1.07999 * 120.00143 * 190.49207 * 17 16 15 19 19 C 1.38818 * 119.99636 * 10.49283 * 17 16 15 20 20 N 1.31618 * 120.00172 * 8.87797 * 19 17 16 21 21 Si 1.86808 * 119.99719 * 188.88217 * 19 17 16 22 22 H 1.48497 * 109.46866 * 265.00451 * 21 19 17 23 23 H 1.48499 * 109.46920 * 25.00539 * 21 19 17 24 24 H 1.48493 * 109.47044 * 145.00525 * 21 19 17 25 25 C 1.47022 * 108.70708 * 335.55534 * 16 15 14 26 26 H 1.08995 * 109.47461 * 275.77771 * 1 2 3 27 27 H 1.08998 * 109.47217 * 35.77927 * 1 2 3 28 28 H 1.09000 * 109.47054 * 155.77423 * 1 2 3 29 29 H 1.07994 * 126.44240 * 180.02562 * 9 7 6 30 30 H 1.09000 * 111.00291 * 324.20466 * 14 12 2 31 31 H 1.08994 * 111.00901 * 88.02596 * 14 12 2 32 32 H 1.09000 * 110.49655 * 278.45833 * 15 14 12 33 33 H 1.08994 * 110.34292 * 156.05398 * 15 14 12 34 34 H 0.96995 * 120.00004 * 180.02562 * 20 19 17 35 35 H 1.08998 * 109.88346 * 120.69881 * 25 16 15 36 36 H 1.09000 * 109.88093 * 241.87098 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3523 1.1686 0.0747 5 6 1.4036 2.4440 -0.0906 6 7 0.0941 2.5977 -0.0649 7 7 -0.2075 3.8424 -0.1652 8 1 -1.1106 4.1966 -0.1689 9 6 0.9209 4.5900 -0.2652 10 6 1.9715 3.7350 -0.2156 11 9 3.2842 4.0486 -0.2753 12 6 2.1975 -1.2687 0.0006 13 1 3.2726 -1.0917 -0.0296 14 6 1.7507 -2.1610 -1.1875 15 6 2.0692 -3.5793 -0.6455 16 7 1.7324 -3.5166 0.7884 17 6 1.4004 -4.5853 1.5777 18 1 1.0067 -4.4221 2.5700 19 6 1.5699 -5.8784 1.1022 20 7 2.2084 -6.0849 -0.0301 21 14 0.8918 -7.3256 2.0695 22 1 1.9590 -7.8840 2.9380 23 1 -0.2436 -6.8699 2.9111 24 1 0.4211 -8.3731 1.1281 25 6 1.8182 -2.1176 1.2323 26 1 -0.3634 0.1034 1.0224 27 1 -0.3633 0.8337 -0.6008 28 1 -0.3633 -0.9372 -0.4217 29 1 0.9721 5.6645 -0.3609 30 1 0.6850 -2.0446 -1.3844 31 1 2.3369 -1.9448 -2.0806 32 1 3.1264 -3.8097 -0.7771 33 1 1.4522 -4.3243 -1.1478 34 1 2.3265 -6.9884 -0.3625 35 1 0.8540 -1.7930 1.6235 36 1 2.5848 -2.0189 2.0008 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033395631.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:37 Heat of formation + Delta-G solvation = 20.609994 kcal Electronic energy + Delta-G solvation = -22203.514485 eV Core-core repulsion = 18639.740344 eV Total energy + Delta-G solvation = -3563.774142 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.123 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.69455 -43.73228 -41.01438 -38.94230 -36.34375 -34.20948 -32.82732 -31.64178 -31.01677 -29.26478 -27.87379 -26.66767 -25.01363 -22.97453 -22.19250 -21.73478 -20.45342 -19.51751 -18.92017 -18.32331 -17.51245 -17.34322 -16.93598 -16.71152 -16.25177 -16.05622 -15.81138 -15.52679 -15.38522 -14.62836 -14.42658 -14.09381 -13.83838 -13.79571 -13.46268 -13.05670 -12.83555 -12.71067 -12.45396 -12.19923 -11.99758 -11.90557 -11.79799 -11.48334 -11.26896 -10.70078 -10.64400 -10.05302 -9.67610 -8.89524 -7.88478 -5.25305 0.27126 0.82217 1.47643 1.49232 1.58612 1.62279 1.96692 2.08570 2.50549 2.95788 3.31280 3.55615 3.62568 3.72948 3.84336 3.87469 3.96613 4.20322 4.30515 4.44317 4.52442 4.65986 4.72771 4.84648 4.95875 5.01728 5.09032 5.21870 5.42200 5.50993 5.55028 5.67939 5.95490 6.17875 6.28237 6.59913 6.97595 7.06122 7.72127 8.39128 9.23436 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.039915 B = 0.003694 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.325166 B = 7579.020294 C = 7859.275475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.584 5.584 3 C 0.589 3.411 4 O -0.574 6.574 5 C -0.053 4.053 6 N -0.228 5.228 7 N -0.343 5.343 8 H 0.478 0.522 9 C 0.013 3.987 10 C -0.010 4.010 11 F -0.121 7.121 12 C 0.140 3.860 13 H 0.086 0.914 14 C -0.133 4.133 15 C 0.182 3.818 16 N -0.620 5.620 17 C -0.248 4.248 18 H 0.080 0.920 19 C -0.060 4.060 20 N -0.948 5.948 21 Si 0.981 3.019 22 H -0.289 1.289 23 H -0.266 1.266 24 H -0.290 1.290 25 C 0.132 3.868 26 H 0.062 0.938 27 H 0.112 0.888 28 H 0.074 0.926 29 H 0.250 0.750 30 H 0.086 0.914 31 H 0.081 0.919 32 H -0.002 1.002 33 H 0.046 0.954 34 H 0.250 0.750 35 H 0.043 0.957 36 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.166 24.442 -2.909 26.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.314 5.314 3 C 0.376 3.624 4 O -0.452 6.452 5 C -0.212 4.212 6 N -0.067 5.067 7 N -0.063 5.063 8 H 0.330 0.670 9 C -0.133 4.133 10 C -0.040 4.040 11 F -0.100 7.100 12 C 0.036 3.964 13 H 0.104 0.896 14 C -0.172 4.172 15 C 0.056 3.944 16 N -0.347 5.347 17 C -0.376 4.376 18 H 0.097 0.903 19 C -0.254 4.254 20 N -0.596 5.596 21 Si 0.809 3.191 22 H -0.216 1.216 23 H -0.191 1.191 24 H -0.216 1.216 25 C 0.006 3.994 26 H 0.080 0.920 27 H 0.130 0.870 28 H 0.093 0.907 29 H 0.266 0.734 30 H 0.105 0.895 31 H 0.100 0.900 32 H 0.016 0.984 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -10.479 23.626 -2.784 25.995 hybrid contribution 0.874 -0.636 0.463 1.176 sum -9.605 22.989 -2.321 25.023 Atomic orbital electron populations 1.22282 0.76692 1.04523 1.03312 1.47677 1.08720 1.04171 1.70848 1.17327 0.85939 0.82743 0.76361 1.90793 1.14770 1.87150 1.52533 1.21780 0.90983 0.94039 1.14415 1.73773 1.13233 1.01772 1.17945 1.43400 1.10870 1.02466 1.49549 0.66971 1.23305 0.83507 1.00771 1.05746 1.17665 0.80245 0.92284 1.13768 1.91479 1.31086 1.92701 1.94738 1.21875 0.96606 0.82094 0.95863 0.89557 1.23253 1.02278 0.94920 0.96754 1.21221 0.96424 0.92926 0.83820 1.44710 1.81202 1.01964 1.06812 1.19406 1.35179 0.84956 0.98107 0.90253 1.25703 1.00666 0.99887 0.99136 1.70147 1.45972 1.20260 1.23206 0.85033 0.78053 0.78628 0.77386 1.21566 1.19104 1.21646 1.21575 0.98174 0.84980 0.94702 0.91953 0.87002 0.90694 0.73389 0.89519 0.90033 0.98410 0.93553 0.94090 0.93905 0.97117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.89 8.40 127.77 1.07 2.96 16 2 N -0.58 -19.43 2.88 -819.63 -2.36 -21.79 16 3 C 0.59 20.67 7.67 86.72 0.67 21.34 16 4 O -0.57 -24.81 16.06 -3.94 -0.06 -24.87 16 5 C -0.05 -1.40 6.83 42.44 0.29 -1.11 16 6 N -0.23 -4.11 8.72 -48.15 -0.42 -4.53 16 7 N -0.34 -2.67 6.86 -56.99 -0.39 -3.06 16 8 H 0.48 -1.05 8.96 -219.99 -1.97 -3.02 16 9 C 0.01 0.12 12.06 83.47 1.01 1.12 16 10 C -0.01 -0.22 8.03 22.48 0.18 -0.04 16 11 F -0.12 -3.42 17.05 44.97 0.77 -2.65 16 12 C 0.14 5.54 3.35 46.18 0.15 5.70 16 13 H 0.09 3.78 7.00 -2.39 -0.02 3.76 16 14 C -0.13 -5.14 6.60 32.07 0.21 -4.93 16 15 C 0.18 9.19 5.43 86.93 0.47 9.66 16 16 N -0.62 -33.12 3.39 -691.53 -2.35 -35.46 16 17 C -0.25 -14.21 10.24 84.03 0.86 -13.35 16 18 H 0.08 4.37 7.84 -2.91 -0.02 4.35 16 19 C -0.06 -3.47 5.41 84.86 0.46 -3.01 16 20 N -0.95 -57.52 10.68 21.65 0.23 -57.29 16 21 Si 0.98 45.94 29.56 68.60 2.03 47.97 16 22 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 23 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 24 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 25 C 0.13 5.94 6.88 86.73 0.60 6.53 16 26 H 0.06 1.53 8.09 -2.39 -0.02 1.51 16 27 H 0.11 2.37 5.29 -2.39 -0.01 2.36 16 28 H 0.07 1.98 6.13 -2.39 -0.01 1.96 16 29 H 0.25 -0.44 8.06 -2.91 -0.02 -0.47 16 30 H 0.09 3.02 6.15 -2.39 -0.01 3.01 16 31 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 32 H 0.00 -0.12 8.07 -2.39 -0.02 -0.14 16 33 H 0.05 2.56 6.94 -2.39 -0.02 2.54 16 34 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 35 H 0.04 1.81 7.07 -2.39 -0.02 1.79 16 36 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 Total: -1.00 -81.04 301.62 2.57 -78.46 By element: Atomic # 1 Polarization: -0.82 SS G_CDS: -0.84 Total: -1.65 kcal Atomic # 6 Polarization: 18.91 SS G_CDS: 5.97 Total: 24.88 kcal Atomic # 7 Polarization: -116.85 SS G_CDS: -5.29 Total: -122.14 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -0.06 Total: -24.87 kcal Atomic # 9 Polarization: -3.42 SS G_CDS: 0.77 Total: -2.65 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -81.04 2.57 -78.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033395631.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.074 kcal (2) G-P(sol) polarization free energy of solvation -81.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds