Wall clock time and date at job start Tue Mar 31 2020 05:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34779 * 119.99967 * 2 1 4 4 O 1.21580 * 120.00294 * 182.72867 * 3 2 1 5 5 C 1.47618 * 120.00004 * 2.73024 * 3 2 1 6 6 N 1.31872 * 126.46005 * 354.96405 * 5 3 2 7 7 N 1.28463 * 110.15675 * 179.97438 * 6 5 3 8 8 H 0.97007 * 124.93199 * 180.26589 * 7 6 5 9 9 C 1.35728 * 110.13243 * 359.97438 * 7 6 5 10 10 C 1.35534 * 107.11954 * 0.02562 * 9 7 6 11 11 F 1.35098 * 127.24707 * 179.97438 * 10 9 7 12 12 C 1.46499 * 120.00284 * 180.02562 * 2 1 3 13 13 H 1.08997 * 110.88912 * 176.11665 * 12 2 1 14 14 C 1.55157 * 111.00349 * 299.99776 * 12 2 1 15 15 C 1.54319 * 102.94074 * 153.57454 * 14 12 2 16 16 N 1.47024 * 107.27398 * 337.80595 * 15 14 12 17 17 C 1.36941 * 125.65054 * 178.91517 * 16 15 14 18 18 H 1.07990 * 119.99827 * 180.02562 * 17 16 15 19 19 C 1.38817 * 119.99629 * 0.03127 * 17 16 15 20 20 N 1.31621 * 120.00112 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99674 * 179.97438 * 19 17 16 22 22 H 1.48491 * 109.47247 * 89.99710 * 21 19 17 23 23 H 1.48494 * 109.46883 * 210.00201 * 21 19 17 24 24 H 1.48500 * 109.47109 * 329.99877 * 21 19 17 25 25 C 1.47419 * 108.70221 * 358.94490 * 16 15 14 26 26 H 1.09007 * 109.47586 * 83.89319 * 1 2 3 27 27 H 1.08995 * 109.47161 * 203.89179 * 1 2 3 28 28 H 1.09003 * 109.47234 * 323.89649 * 1 2 3 29 29 H 1.08000 * 126.43690 * 180.02562 * 9 7 6 30 30 H 1.08992 * 110.72258 * 271.93960 * 14 12 2 31 31 H 1.09003 * 110.71608 * 35.03556 * 14 12 2 32 32 H 1.08994 * 109.88345 * 97.22699 * 15 14 12 33 33 H 1.09000 * 109.88144 * 218.23942 * 15 14 12 34 34 H 0.96999 * 119.99408 * 179.97438 * 20 19 17 35 35 H 1.09000 * 110.36663 * 265.28883 * 25 16 15 36 36 H 1.08999 * 110.37005 * 142.96136 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3536 1.1679 -0.0501 5 6 1.4020 2.4449 0.0609 6 7 0.0925 2.5968 0.0254 7 7 -0.2107 3.8430 0.0999 8 1 -1.1143 4.1960 0.0960 9 6 0.9165 4.5934 0.1912 10 6 1.9679 3.7384 0.1694 11 9 3.2798 4.0537 0.2368 12 6 2.1975 -1.2687 -0.0006 13 1 3.2717 -1.0972 -0.0695 14 6 1.8484 -2.1130 1.2535 15 6 2.1064 -3.5587 0.7795 16 7 2.0264 -3.5577 -0.6885 17 6 2.2173 -4.6449 -1.4990 18 1 2.1368 -4.5402 -2.5708 19 6 2.5140 -5.8817 -0.9427 20 7 2.6124 -6.0092 0.3636 21 14 2.7737 -7.3649 -2.0482 22 1 4.2091 -7.4634 -2.4154 23 1 2.3610 -8.5967 -1.3288 24 1 1.9571 -7.2137 -3.2793 25 6 1.7075 -2.1923 -1.1436 26 1 -0.3634 0.1093 -1.0219 27 1 -0.3633 -0.9396 0.4162 28 1 -0.3634 0.8303 0.6056 29 1 0.9663 5.6696 0.2669 30 1 2.5043 -1.8571 2.0855 31 1 0.8034 -1.9761 1.5318 32 1 3.0981 -3.8814 1.0966 33 1 1.3499 -4.2252 1.1938 34 1 2.8194 -6.8735 0.7522 35 1 0.6326 -2.0814 -1.2864 36 1 2.2391 -1.9666 -2.0680 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033395634.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:41 Heat of formation + Delta-G solvation = 46.029304 kcal Electronic energy + Delta-G solvation = -22177.888830 eV Core-core repulsion = 18615.216952 eV Total energy + Delta-G solvation = -3562.671878 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.123 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.77811 -42.96043 -39.58548 -37.24481 -34.80217 -32.49058 -31.66320 -30.84107 -29.16157 -27.51915 -26.66435 -24.85074 -23.69500 -22.18183 -20.49644 -20.07925 -19.34778 -18.52311 -17.11514 -16.92199 -16.62962 -16.10404 -15.92950 -15.28462 -14.93126 -14.61013 -14.48860 -14.03546 -13.86064 -13.16500 -12.85942 -12.70215 -12.37078 -12.20244 -12.00444 -11.67834 -10.95261 -10.91724 -10.81141 -10.72863 -10.28932 -10.08057 -9.90204 -9.82194 -9.76021 -9.65103 -9.24303 -8.58933 -8.29195 -6.81098 -5.68303 -3.02358 1.20876 1.56592 2.32285 3.05188 3.30894 3.43580 3.48357 3.50117 3.90972 4.28949 4.51384 4.53889 4.73629 4.98350 5.40293 5.44127 5.47261 5.67406 5.70316 5.81548 5.83286 5.96510 6.13774 6.25276 6.33864 6.46323 6.55067 6.63690 6.73882 6.99765 7.31255 7.57012 7.60111 7.64613 7.85360 8.25804 8.30434 9.24314 9.84225 10.49449 11.43287 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.040611 B = 0.003631 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.300016 B = 7710.267502 C = 7883.688646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.584 5.584 3 C 0.593 3.407 4 O -0.527 6.527 5 C -0.019 4.019 6 N -0.229 5.229 7 N -0.376 5.376 8 H 0.455 0.545 9 C -0.039 4.039 10 C 0.037 3.963 11 F -0.100 7.100 12 C 0.122 3.878 13 H 0.108 0.892 14 C -0.153 4.153 15 C 0.180 3.820 16 N -0.603 5.603 17 C -0.228 4.228 18 H 0.079 0.921 19 C -0.008 4.008 20 N -0.922 5.922 21 Si 0.913 3.087 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.132 3.868 26 H 0.056 0.944 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.197 0.803 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.046 0.954 34 H 0.252 0.748 35 H 0.024 0.976 36 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.846 21.974 1.777 23.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.315 5.315 3 C 0.378 3.622 4 O -0.401 6.401 5 C -0.181 4.181 6 N -0.066 5.066 7 N -0.091 5.091 8 H 0.301 0.699 9 C -0.184 4.184 10 C 0.007 3.993 11 F -0.078 7.078 12 C 0.019 3.981 13 H 0.126 0.874 14 C -0.192 4.192 15 C 0.055 3.945 16 N -0.330 5.330 17 C -0.356 4.356 18 H 0.096 0.904 19 C -0.204 4.204 20 N -0.569 5.569 21 Si 0.744 3.256 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.005 3.995 26 H 0.075 0.925 27 H 0.094 0.906 28 H 0.106 0.894 29 H 0.214 0.786 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.041 0.959 36 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -9.046 21.107 1.696 23.026 hybrid contribution 0.482 -0.007 -0.446 0.656 sum -8.563 21.099 1.250 22.805 Atomic orbital electron populations 1.22086 0.78938 1.03543 1.02385 1.47647 1.07551 1.05365 1.70928 1.16814 0.86212 0.81550 0.77622 1.90841 1.12506 1.86293 1.50496 1.22307 0.89714 0.95086 1.10960 1.73924 1.14987 0.99699 1.17966 1.43202 1.09516 1.03569 1.52840 0.69904 1.22651 0.85677 0.99319 1.10752 1.17187 0.79952 0.91659 1.10510 1.91546 1.29479 1.92601 1.94202 1.22545 0.97482 0.80657 0.97436 0.87371 1.23259 1.00629 0.98613 0.96675 1.21140 1.01058 0.88874 0.83450 1.44386 1.83148 1.03169 1.02286 1.19063 1.41207 0.85969 0.89394 0.90361 1.24808 1.01891 0.97668 0.96016 1.69962 1.54934 1.23372 1.08664 0.86096 0.77921 0.82313 0.79296 1.21561 1.21694 1.20703 1.21743 0.97202 0.85823 0.94738 0.92538 0.90580 0.89385 0.78614 0.91825 0.92014 0.93258 0.93633 0.93733 0.95864 0.93989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.98 8.19 59.84 0.49 1.47 16 2 N -0.58 -9.72 2.91 -172.68 -0.50 -10.23 16 3 C 0.59 10.32 7.68 -12.43 -0.10 10.23 16 4 O -0.53 -11.00 16.06 5.30 0.09 -10.92 16 5 C -0.02 -0.26 6.83 -82.74 -0.56 -0.83 16 6 N -0.23 -2.39 8.73 33.43 0.29 -2.10 16 7 N -0.38 -2.32 6.86 30.63 0.21 -2.11 16 8 H 0.45 0.75 8.96 -190.44 -1.71 -0.96 16 9 C -0.04 -0.27 12.06 -16.79 -0.20 -0.47 16 10 C 0.04 0.45 8.03 -39.27 -0.32 0.13 16 11 F -0.10 -1.42 17.04 2.25 0.04 -1.38 16 12 C 0.12 2.39 3.44 -65.78 -0.23 2.16 16 13 H 0.11 2.34 7.01 -51.93 -0.36 1.97 16 14 C -0.15 -2.98 6.50 -24.90 -0.16 -3.14 16 15 C 0.18 4.44 5.37 -3.07 -0.02 4.43 16 16 N -0.60 -15.76 3.39 -170.08 -0.58 -16.34 16 17 C -0.23 -6.47 10.28 -15.06 -0.15 -6.63 16 18 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 19 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 20 N -0.92 -27.33 10.31 55.49 0.57 -26.76 16 21 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 C 0.13 2.86 6.79 -2.53 -0.02 2.84 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.08 1.03 6.36 -51.93 -0.33 0.70 16 28 H 0.09 1.03 5.38 -51.93 -0.28 0.75 16 29 H 0.20 0.49 8.06 -52.49 -0.42 0.07 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.06 1.09 6.47 -51.93 -0.34 0.76 16 32 H 0.05 1.35 7.38 -51.93 -0.38 0.97 16 33 H 0.05 1.22 7.51 -51.93 -0.39 0.83 16 34 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 35 H 0.02 0.49 6.94 -51.93 -0.36 0.12 16 36 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 301.47 15.07 4.54 4.54 Total: -1.00 -35.27 301.47 -7.11 -42.38 By element: Atomic # 1 Polarization: 1.07 SS G_CDS: -5.39 Total: -4.32 kcal Atomic # 6 Polarization: 11.24 SS G_CDS: -1.36 Total: 9.88 kcal Atomic # 7 Polarization: -57.53 SS G_CDS: -0.01 Total: -57.53 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.09 Total: -10.92 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -35.27 -7.11 -42.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033395634.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.408 kcal (2) G-P(sol) polarization free energy of solvation -35.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds