Wall clock time and date at job start Tue Mar 31 2020 05:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34779 * 119.99967 * 2 1 4 4 O 1.21580 * 120.00294 * 182.72867 * 3 2 1 5 5 C 1.47618 * 120.00004 * 2.73024 * 3 2 1 6 6 N 1.31872 * 126.46005 * 354.96405 * 5 3 2 7 7 N 1.28463 * 110.15675 * 179.97438 * 6 5 3 8 8 H 0.97007 * 124.93199 * 180.26589 * 7 6 5 9 9 C 1.35728 * 110.13243 * 359.97438 * 7 6 5 10 10 C 1.35534 * 107.11954 * 0.02562 * 9 7 6 11 11 F 1.35098 * 127.24707 * 179.97438 * 10 9 7 12 12 C 1.46499 * 120.00284 * 180.02562 * 2 1 3 13 13 H 1.08997 * 110.88912 * 176.11665 * 12 2 1 14 14 C 1.55157 * 111.00349 * 299.99776 * 12 2 1 15 15 C 1.54319 * 102.94074 * 153.57454 * 14 12 2 16 16 N 1.47024 * 107.27398 * 337.80595 * 15 14 12 17 17 C 1.36941 * 125.65054 * 178.91517 * 16 15 14 18 18 H 1.07990 * 119.99827 * 180.02562 * 17 16 15 19 19 C 1.38817 * 119.99629 * 0.03127 * 17 16 15 20 20 N 1.31621 * 120.00112 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99674 * 179.97438 * 19 17 16 22 22 H 1.48491 * 109.47247 * 89.99710 * 21 19 17 23 23 H 1.48494 * 109.46883 * 210.00201 * 21 19 17 24 24 H 1.48500 * 109.47109 * 329.99877 * 21 19 17 25 25 C 1.47419 * 108.70221 * 358.94490 * 16 15 14 26 26 H 1.09007 * 109.47586 * 83.89319 * 1 2 3 27 27 H 1.08995 * 109.47161 * 203.89179 * 1 2 3 28 28 H 1.09003 * 109.47234 * 323.89649 * 1 2 3 29 29 H 1.08000 * 126.43690 * 180.02562 * 9 7 6 30 30 H 1.08992 * 110.72258 * 271.93960 * 14 12 2 31 31 H 1.09003 * 110.71608 * 35.03556 * 14 12 2 32 32 H 1.08994 * 109.88345 * 97.22699 * 15 14 12 33 33 H 1.09000 * 109.88144 * 218.23942 * 15 14 12 34 34 H 0.96999 * 119.99408 * 179.97438 * 20 19 17 35 35 H 1.09000 * 110.36663 * 265.28883 * 25 16 15 36 36 H 1.08999 * 110.37005 * 142.96136 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3536 1.1679 -0.0501 5 6 1.4020 2.4449 0.0609 6 7 0.0925 2.5968 0.0254 7 7 -0.2107 3.8430 0.0999 8 1 -1.1143 4.1960 0.0960 9 6 0.9165 4.5934 0.1912 10 6 1.9679 3.7384 0.1694 11 9 3.2798 4.0537 0.2368 12 6 2.1975 -1.2687 -0.0006 13 1 3.2717 -1.0972 -0.0695 14 6 1.8484 -2.1130 1.2535 15 6 2.1064 -3.5587 0.7795 16 7 2.0264 -3.5577 -0.6885 17 6 2.2173 -4.6449 -1.4990 18 1 2.1368 -4.5402 -2.5708 19 6 2.5140 -5.8817 -0.9427 20 7 2.6124 -6.0092 0.3636 21 14 2.7737 -7.3649 -2.0482 22 1 4.2091 -7.4634 -2.4154 23 1 2.3610 -8.5967 -1.3288 24 1 1.9571 -7.2137 -3.2793 25 6 1.7075 -2.1923 -1.1436 26 1 -0.3634 0.1093 -1.0219 27 1 -0.3633 -0.9396 0.4162 28 1 -0.3634 0.8303 0.6056 29 1 0.9663 5.6696 0.2669 30 1 2.5043 -1.8571 2.0855 31 1 0.8034 -1.9761 1.5318 32 1 3.0981 -3.8814 1.0966 33 1 1.3499 -4.2252 1.1938 34 1 2.8194 -6.8735 0.7522 35 1 0.6326 -2.0814 -1.2864 36 1 2.2391 -1.9666 -2.0680 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033395634.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:40 Heat of formation + Delta-G solvation = 20.203029 kcal Electronic energy + Delta-G solvation = -22179.008741 eV Core-core repulsion = 18615.216952 eV Total energy + Delta-G solvation = -3563.791789 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.123 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.69383 -43.72843 -40.99060 -38.94816 -36.35919 -34.20283 -32.82065 -31.63763 -31.03515 -29.20598 -27.90702 -26.65492 -25.03084 -22.97181 -22.06860 -21.77478 -20.49112 -19.51825 -18.94427 -18.32136 -17.51453 -17.35650 -16.93468 -16.68245 -16.15803 -16.10648 -15.83334 -15.41394 -15.39867 -14.57072 -14.27724 -14.07064 -13.99355 -13.80738 -13.59450 -13.04189 -12.91226 -12.73504 -12.38292 -12.11031 -12.02458 -11.89999 -11.78807 -11.47550 -11.25572 -10.72433 -10.63867 -10.05141 -9.68267 -8.92342 -7.85617 -5.22764 0.27611 0.82394 1.46620 1.49540 1.57464 1.62313 1.96679 2.09401 2.50563 2.96052 3.33039 3.55901 3.64982 3.69697 3.86761 3.90098 3.99655 4.17369 4.31464 4.44547 4.55499 4.63863 4.74047 4.80979 4.94078 5.00350 5.13730 5.21973 5.42568 5.51229 5.60829 5.71821 5.95518 6.17089 6.28911 6.60272 6.98646 7.08132 7.73427 8.37719 9.24661 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.040611 B = 0.003631 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.300016 B = 7710.267502 C = 7883.688646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.583 5.583 3 C 0.588 3.412 4 O -0.576 6.576 5 C -0.053 4.053 6 N -0.227 5.227 7 N -0.343 5.343 8 H 0.479 0.521 9 C 0.013 3.987 10 C -0.011 4.011 11 F -0.122 7.122 12 C 0.137 3.863 13 H 0.081 0.919 14 C -0.134 4.134 15 C 0.189 3.811 16 N -0.624 5.624 17 C -0.247 4.247 18 H 0.083 0.917 19 C -0.063 4.063 20 N -0.950 5.950 21 Si 0.982 3.018 22 H -0.288 1.288 23 H -0.292 1.292 24 H -0.267 1.267 25 C 0.135 3.865 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.109 0.891 29 H 0.250 0.750 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.011 0.989 33 H 0.019 0.981 34 H 0.248 0.752 35 H 0.044 0.956 36 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.356 24.497 1.344 27.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.313 5.313 3 C 0.376 3.624 4 O -0.454 6.454 5 C -0.212 4.212 6 N -0.066 5.066 7 N -0.063 5.063 8 H 0.331 0.669 9 C -0.134 4.134 10 C -0.040 4.040 11 F -0.101 7.101 12 C 0.032 3.968 13 H 0.100 0.900 14 C -0.173 4.173 15 C 0.064 3.936 16 N -0.351 5.351 17 C -0.375 4.375 18 H 0.101 0.899 19 C -0.257 4.257 20 N -0.599 5.599 21 Si 0.810 3.190 22 H -0.215 1.215 23 H -0.218 1.218 24 H -0.192 1.192 25 C 0.008 3.992 26 H 0.085 0.915 27 H 0.094 0.906 28 H 0.127 0.873 29 H 0.266 0.734 30 H 0.092 0.908 31 H 0.106 0.894 32 H 0.029 0.971 33 H 0.038 0.962 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -11.629 23.667 1.248 26.399 hybrid contribution 1.164 -0.646 -0.329 1.372 sum -10.465 23.021 0.919 25.305 Atomic orbital electron populations 1.22286 0.76535 1.04443 1.03531 1.47628 1.08785 1.04098 1.70822 1.17339 0.85945 0.82790 0.76375 1.90801 1.14771 1.87192 1.52637 1.21772 0.91011 0.93941 1.14492 1.73778 1.13119 1.01762 1.17907 1.43395 1.10863 1.02317 1.49681 0.66942 1.23293 0.83542 1.00737 1.05783 1.17680 0.80272 0.92277 1.13817 1.91479 1.31220 1.92671 1.94696 1.22052 0.96451 0.81939 0.96390 0.90049 1.23065 1.02467 0.94940 0.96779 1.20868 0.98043 0.91565 0.83109 1.44660 1.83211 1.04456 1.02810 1.19461 1.40970 0.87028 0.90072 0.89914 1.25683 1.02024 1.00495 0.97455 1.70178 1.55794 1.23606 1.10297 0.85030 0.77713 0.78405 0.77868 1.21473 1.21784 1.19181 1.21829 0.98062 0.84222 0.95066 0.91522 0.90580 0.87279 0.73418 0.90809 0.89393 0.97051 0.96248 0.94251 0.93841 0.94719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.80 8.19 127.77 1.05 2.84 16 2 N -0.58 -19.17 2.91 -818.50 -2.38 -21.55 16 3 C 0.59 20.67 7.68 86.72 0.67 21.33 16 4 O -0.58 -25.18 16.06 -3.97 -0.06 -25.25 16 5 C -0.05 -1.39 6.83 42.45 0.29 -1.10 16 6 N -0.23 -3.98 8.73 -48.15 -0.42 -4.40 16 7 N -0.34 -2.56 6.86 -57.00 -0.39 -2.95 16 8 H 0.48 -1.23 8.96 -219.99 -1.97 -3.20 16 9 C 0.01 0.11 12.06 83.46 1.01 1.12 16 10 C -0.01 -0.24 8.03 22.47 0.18 -0.06 16 11 F -0.12 -3.47 17.04 44.97 0.77 -2.70 16 12 C 0.14 5.43 3.44 46.38 0.16 5.59 16 13 H 0.08 3.70 7.01 -2.39 -0.02 3.68 16 14 C -0.13 -5.25 6.50 31.78 0.21 -5.04 16 15 C 0.19 9.72 5.37 86.73 0.47 10.18 16 16 N -0.62 -33.47 3.39 -692.02 -2.35 -35.82 16 17 C -0.25 -14.26 10.28 84.03 0.86 -13.40 16 18 H 0.08 4.57 7.83 -2.92 -0.02 4.55 16 19 C -0.06 -3.69 5.49 84.86 0.47 -3.22 16 20 N -0.95 -58.17 10.31 21.65 0.22 -57.94 16 21 Si 0.98 46.62 29.55 68.60 2.03 48.65 16 22 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 23 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 24 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 25 C 0.13 5.87 6.79 86.86 0.59 6.46 16 26 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 27 H 0.08 1.87 6.36 -2.39 -0.02 1.85 16 28 H 0.11 2.22 5.38 -2.39 -0.01 2.21 16 29 H 0.25 -0.45 8.06 -2.91 -0.02 -0.48 16 30 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 31 H 0.09 3.00 6.47 -2.39 -0.02 2.98 16 32 H 0.01 0.65 7.38 -2.39 -0.02 0.63 16 33 H 0.02 1.08 7.51 -2.39 -0.02 1.06 16 34 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 35 H 0.04 1.75 6.94 -2.39 -0.02 1.73 16 36 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -82.19 301.47 2.51 -79.68 By element: Atomic # 1 Polarization: -1.59 SS G_CDS: -0.84 Total: -2.43 kcal Atomic # 6 Polarization: 18.77 SS G_CDS: 5.94 Total: 24.71 kcal Atomic # 7 Polarization: -117.35 SS G_CDS: -5.32 Total: -122.66 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -0.06 Total: -25.25 kcal Atomic # 9 Polarization: -3.47 SS G_CDS: 0.77 Total: -2.70 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -82.19 2.51 -79.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033395634.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.880 kcal (2) G-P(sol) polarization free energy of solvation -82.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds