Wall clock time and date at job start Tue Mar 31 2020 05:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46903 * 109.46593 * 2 1 4 4 C 1.46907 * 110.99940 * 286.34290 * 3 2 1 5 5 C 1.50705 * 109.46873 * 73.96529 * 4 3 2 6 6 H 1.07994 * 119.99953 * 5.20213 * 5 4 3 7 7 C 1.37868 * 119.99816 * 185.20141 * 5 4 3 8 8 N 1.31518 * 120.00261 * 179.97438 * 7 5 4 9 9 Si 1.86808 * 120.00270 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.46938 * 89.99753 * 9 7 5 11 11 H 1.48501 * 109.47156 * 210.00218 * 9 7 5 12 12 H 1.48504 * 109.46636 * 329.99779 * 9 7 5 13 13 C 1.46902 * 110.99823 * 162.39473 * 3 2 1 14 14 C 1.52996 * 109.46960 * 180.51767 * 13 3 2 15 15 C 1.52993 * 109.47222 * 60.51573 * 13 3 2 16 16 C 1.50703 * 109.46992 * 300.51297 * 13 3 2 17 17 C 1.38713 * 120.78174 * 149.09660 * 16 13 3 18 18 C 1.38139 * 119.19145 * 180.02562 * 17 16 13 19 19 N 1.31910 * 120.78494 * 0.02562 * 18 17 16 20 20 C 1.31945 * 121.70374 * 359.68882 * 19 18 17 21 21 Cl 1.73603 * 119.63061 * 180.28870 * 20 19 18 22 22 C 1.38396 * 120.73326 * 0.57751 * 20 19 18 23 23 H 1.09007 * 109.46968 * 188.57101 * 1 2 3 24 24 H 1.08999 * 109.47050 * 308.56393 * 1 2 3 25 25 H 1.08996 * 109.47553 * 68.57389 * 1 2 3 26 26 H 1.08998 * 109.47105 * 240.00230 * 2 1 3 27 27 H 1.08998 * 109.47470 * 119.99380 * 2 1 3 28 28 H 1.09001 * 109.47018 * 193.96205 * 4 3 2 29 29 H 1.09000 * 109.47283 * 313.96485 * 4 3 2 30 30 H 0.97000 * 120.00083 * 180.02562 * 8 7 5 31 31 H 1.09003 * 109.47508 * 179.97438 * 14 13 3 32 32 H 1.09002 * 109.47639 * 299.99558 * 14 13 3 33 33 H 1.09001 * 109.47570 * 59.99510 * 14 13 3 34 34 H 1.08998 * 109.47359 * 299.99850 * 15 13 3 35 35 H 1.09002 * 109.47470 * 60.00383 * 15 13 3 36 36 H 1.09010 * 109.47061 * 180.02562 * 15 13 3 37 37 H 1.07999 * 120.39980 * 0.02562 * 17 16 13 38 38 H 1.08003 * 119.60596 * 180.02562 * 18 17 16 39 39 H 1.07994 * 120.42256 * 179.73190 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.8311 2.0100 -1.3161 5 6 0.3718 2.3281 -1.5168 6 1 -0.3313 2.1678 -0.7129 7 6 -0.0656 2.8238 -2.7266 8 7 -1.3393 3.1009 -2.9020 9 14 1.1505 3.1004 -4.1174 10 1 1.2501 1.8683 -4.9402 11 1 0.6841 4.2262 -4.9662 12 1 2.4840 3.4268 -3.5512 13 6 3.4275 1.4457 0.4148 14 6 3.8968 2.9020 0.4149 15 6 4.2821 0.6345 -0.5610 16 6 3.5677 0.8728 1.8016 17 6 4.7340 0.2296 2.1894 18 6 4.8268 -0.2839 3.4684 19 7 3.8232 -0.1687 4.3167 20 6 2.7013 0.4411 3.9848 21 17 1.4174 0.5684 5.1464 22 6 2.5343 0.9753 2.7190 23 1 -0.3633 -1.0163 0.1532 24 1 -0.3633 0.6406 0.8035 25 1 -0.3634 0.3754 -0.9566 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 2.4140 2.9296 -1.3684 29 1 2.1640 1.3241 -2.0951 30 1 -1.6471 3.4493 -3.7534 31 1 4.9413 2.9471 0.7231 32 1 3.7954 3.3165 -0.5881 33 1 3.2879 3.4800 1.1101 34 1 3.9478 -0.4029 -0.5611 35 1 4.1807 1.0490 -1.5641 36 1 5.3268 0.6792 -0.2529 37 1 5.5592 0.1316 1.4997 38 1 5.7320 -0.7855 3.7775 39 1 1.6122 1.4696 2.4513 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165048145.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:13 Heat of formation + Delta-G solvation = 42.035352 kcal Electronic energy + Delta-G solvation = -20865.590515 eV Core-core repulsion = 17834.622165 eV Total energy + Delta-G solvation = -3030.968350 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.63730 -38.31738 -36.52192 -33.97463 -32.25538 -31.46932 -30.89035 -28.93626 -27.34157 -26.98545 -24.04317 -23.32439 -21.89785 -21.16632 -18.82374 -17.44526 -16.57141 -16.37610 -15.68748 -15.08863 -14.70347 -14.36071 -14.02330 -13.95855 -13.72731 -13.61957 -12.87652 -12.58156 -12.25554 -12.21216 -11.70534 -11.65873 -11.50133 -11.24540 -11.13950 -11.10978 -11.09637 -10.85078 -10.58345 -10.43914 -10.12366 -9.78334 -9.55635 -9.45329 -9.03874 -8.91655 -8.54281 -7.51968 -6.07569 -4.02474 0.97156 1.20563 1.89035 3.22972 3.31194 3.32354 3.66477 4.36827 4.39119 4.44258 4.64156 4.97899 5.07412 5.22285 5.22972 5.26417 5.30185 5.64590 5.72452 5.76305 5.78444 5.93710 5.95917 6.04573 6.09237 6.23175 6.33608 6.35000 6.48094 6.56625 6.58313 6.75132 6.85640 6.96694 7.41320 7.60066 7.71712 7.81824 7.97156 8.62059 9.03400 9.53685 11.04486 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.022185 B = 0.005462 C = 0.004776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.819177 B = 5124.826400 C = 5861.110555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.064 3.936 3 N -0.513 5.513 4 C 0.158 3.842 5 C -0.506 4.506 6 H 0.094 0.906 7 C 0.068 3.932 8 N -0.898 5.898 9 Si 0.869 3.131 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.269 1.269 13 C 0.138 3.862 14 C -0.137 4.137 15 C -0.179 4.179 16 C -0.003 4.003 17 C -0.173 4.173 18 C 0.109 3.891 19 N -0.488 5.488 20 C 0.168 3.832 21 Cl -0.038 7.038 22 C -0.122 4.122 23 H 0.030 0.970 24 H 0.054 0.946 25 H 0.098 0.902 26 H 0.025 0.975 27 H 0.048 0.952 28 H 0.034 0.966 29 H -0.012 1.012 30 H 0.263 0.737 31 H 0.052 0.948 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.140 0.860 38 H 0.160 0.840 39 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.230 -5.496 9.331 16.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.063 4.063 3 N -0.237 5.237 4 C 0.032 3.968 5 C -0.545 4.545 6 H 0.112 0.888 7 C -0.133 4.133 8 N -0.538 5.538 9 Si 0.696 3.304 10 H -0.205 1.205 11 H -0.213 1.213 12 H -0.194 1.194 13 C 0.048 3.952 14 C -0.194 4.194 15 C -0.238 4.238 16 C -0.012 4.012 17 C -0.194 4.194 18 C -0.048 4.048 19 N -0.200 5.200 20 C 0.004 3.996 21 Cl -0.009 7.009 22 C -0.143 4.143 23 H 0.049 0.951 24 H 0.073 0.927 25 H 0.116 0.884 26 H 0.043 0.957 27 H 0.067 0.933 28 H 0.052 0.948 29 H 0.006 0.994 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.158 0.842 38 H 0.178 0.822 39 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 11.761 -5.486 10.474 16.677 hybrid contribution 0.904 -0.015 -2.169 2.350 sum 12.665 -5.501 8.305 16.114 Atomic orbital electron populations 1.22094 0.94178 0.98858 1.05622 1.21947 0.97248 0.88827 0.98322 1.62304 1.12544 1.16976 1.31833 1.20370 0.98926 0.93775 0.83738 1.21216 0.91662 1.41759 0.99821 0.88845 1.24886 0.94822 0.95422 0.98176 1.69878 1.13864 1.45096 1.24927 0.86969 0.82206 0.78111 0.83084 1.20484 1.21258 1.19391 1.19985 0.90816 0.95405 0.89005 1.21937 0.99858 0.93941 1.03681 1.22566 0.99779 1.00797 1.00657 1.20321 0.92173 0.92977 0.95725 1.22176 0.99115 1.00103 0.97968 1.22516 0.96035 0.96805 0.89395 1.66935 1.00100 1.15827 1.37126 1.21669 0.90280 0.98089 0.89524 1.98397 1.46289 1.96364 1.59885 1.21944 1.01778 0.99858 0.90715 0.95094 0.92702 0.88353 0.95700 0.93308 0.94793 0.99433 0.92698 0.92872 0.90854 0.91404 0.92283 0.91487 0.92373 0.84206 0.82245 0.82240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 8.59 37.16 0.32 -2.58 16 2 C 0.06 1.16 4.27 -3.82 -0.02 1.14 16 3 N -0.51 -9.52 3.47 -221.73 -0.77 -10.29 16 4 C 0.16 3.45 2.80 -4.97 -0.01 3.44 16 5 C -0.51 -13.19 7.50 -34.44 -0.26 -13.45 16 6 H 0.09 2.63 6.06 -52.49 -0.32 2.31 16 7 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 8 N -0.90 -26.33 13.96 55.43 0.77 -25.55 16 9 Si 0.87 20.52 27.37 -169.99 -4.65 15.86 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.27 -6.04 6.69 56.52 0.38 -5.66 16 13 C 0.14 2.10 0.57 -132.76 -0.08 2.02 16 14 C -0.14 -1.99 8.19 37.16 0.30 -1.69 16 15 C -0.18 -2.44 7.16 37.15 0.27 -2.17 16 16 C 0.00 -0.05 3.66 -104.32 -0.38 -0.43 16 17 C -0.17 -2.00 9.21 -39.44 -0.36 -2.36 16 18 C 0.11 1.25 11.18 -17.55 -0.20 1.06 16 19 N -0.49 -6.89 10.34 -10.36 -0.11 -6.99 16 20 C 0.17 2.45 7.27 -17.44 -0.13 2.32 16 21 Cl -0.04 -0.52 29.11 -51.86 -1.51 -2.03 16 22 C -0.12 -1.82 7.90 -39.40 -0.31 -2.13 16 23 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.05 1.08 7.94 -51.93 -0.41 0.66 16 25 H 0.10 2.24 5.51 -51.93 -0.29 1.96 16 26 H 0.02 0.46 7.00 -51.93 -0.36 0.09 16 27 H 0.05 0.81 5.88 -51.93 -0.31 0.51 16 28 H 0.03 0.75 4.84 -51.93 -0.25 0.50 16 29 H -0.01 -0.27 6.18 -51.93 -0.32 -0.59 16 30 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 1.15 6.00 -51.93 -0.31 0.84 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.06 0.81 6.83 -51.93 -0.35 0.45 16 35 H 0.07 1.00 6.91 -51.93 -0.36 0.64 16 36 H 0.06 0.63 6.59 -51.92 -0.34 0.29 16 37 H 0.14 1.28 6.28 -52.49 -0.33 0.95 16 38 H 0.16 1.28 8.06 -52.48 -0.42 0.86 16 39 H 0.16 2.59 7.51 -52.49 -0.39 2.19 16 LS Contribution 313.24 15.07 4.72 4.72 Total: -1.00 -28.33 313.24 -7.69 -36.02 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -5.20 Total: 1.32 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: -0.95 Total: -13.06 kcal Atomic # 7 Polarization: -42.74 SS G_CDS: -0.10 Total: -42.84 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.65 Total: 15.86 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.51 Total: -2.03 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.33 -7.69 -36.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165048145.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.054 kcal (2) G-P(sol) polarization free energy of solvation -28.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds