Wall clock time and date at job start Tue Mar 31 2020 05:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46765 * 2 1 4 4 N 1.46891 * 109.47026 * 239.99945 * 2 1 3 5 5 C 1.50699 * 109.47150 * 119.99853 * 2 1 3 6 6 C 1.38290 * 119.92561 * 260.00226 * 5 2 1 7 7 C 1.38103 * 120.07924 * 179.97438 * 6 5 2 8 8 C 1.38926 * 119.92082 * 0.02643 * 7 6 5 9 9 N 1.39734 * 120.07514 * 179.97438 * 8 7 6 10 10 C 1.38290 * 119.99818 * 169.74745 * 9 8 7 11 11 C 1.39006 * 120.00297 * 298.56933 * 10 9 8 12 12 H 1.07994 * 120.00097 * 159.47816 * 11 10 9 13 13 C 1.40831 * 119.99902 * 339.47699 * 11 10 9 14 14 N 1.30344 * 120.00077 * 355.64604 * 13 11 10 15 15 Si 1.86799 * 120.00183 * 175.63774 * 13 11 10 16 16 H 1.48502 * 109.46776 * 90.00257 * 15 13 11 17 17 H 1.48494 * 109.47508 * 210.00234 * 15 13 11 18 18 H 1.48507 * 109.46714 * 330.00600 * 15 13 11 19 19 C 1.41167 * 120.00013 * 118.57318 * 10 9 8 20 20 C 1.43198 * 120.00191 * 185.26757 * 19 10 9 21 21 N 9.25683 * 106.15309 * 146.68092 * 2 1 3 22 22 C 1.43198 * 119.99718 * 5.26618 * 19 10 9 23 23 N 8.20058 * 129.42510 * 127.40329 * 2 1 3 24 24 C 1.38923 * 119.84771 * 0.24391 * 8 7 6 25 25 C 1.38096 * 119.92421 * 359.45653 * 24 8 7 26 26 H 1.08996 * 109.47498 * 60.00092 * 1 2 3 27 27 H 1.08995 * 109.46837 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46955 * 300.00107 * 1 2 3 29 29 H 1.00898 * 110.99971 * 296.04734 * 4 2 1 30 30 H 1.00903 * 111.00057 * 59.99868 * 4 2 1 31 31 H 1.08003 * 119.96227 * 359.97438 * 6 5 2 32 32 H 1.07995 * 120.03966 * 180.02562 * 7 6 5 33 33 H 0.97003 * 119.99478 * 350.02933 * 9 8 7 34 34 H 0.96994 * 119.99833 * 185.03853 * 14 13 11 35 35 H 1.08003 * 120.03694 * 179.75112 * 24 8 7 36 36 H 1.08003 * 119.96351 * 180.31636 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0324 -0.7104 1.2305 6 6 2.4585 0.0213 2.3238 7 6 2.9190 -0.6264 3.4533 8 6 2.9543 -2.0147 3.4900 9 7 3.4201 -2.6734 4.6310 10 6 3.2597 -4.0415 4.7534 11 6 1.9839 -4.5931 4.7708 12 1 1.8438 -5.6375 4.5344 13 6 0.8740 -3.7898 5.0969 14 7 1.0509 -2.5519 5.4646 15 14 -0.8518 -4.4984 5.0021 16 1 -1.2139 -5.0965 6.3123 17 1 -1.8134 -3.4170 4.6690 18 1 -0.8999 -5.5452 3.9498 19 6 4.3918 -4.8781 4.8606 20 6 4.2319 -6.3011 4.8738 21 7 4.1053 -7.4299 4.8840 22 6 5.7000 -4.3036 4.9563 23 7 6.7380 -3.8478 5.0321 24 6 2.5307 -2.7466 2.3878 25 6 2.0657 -2.0925 1.2640 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.7502 -1.6648 -1.1908 30 1 1.6961 -0.2349 -2.0385 31 1 2.4312 1.1006 2.2945 32 1 3.2512 -0.0544 4.3069 33 1 3.8522 -2.1704 5.3389 34 1 0.2947 -2.0207 5.7591 35 1 2.5606 -3.8259 2.4115 36 1 1.7314 -2.6609 0.4086 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169084138.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:32 Heat of formation + Delta-G solvation = 77.340588 kcal Electronic energy + Delta-G solvation = -21065.707552 eV Core-core repulsion = 17935.162659 eV Total energy + Delta-G solvation = -3130.544894 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.118 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.34489 -37.47145 -35.66337 -34.85616 -34.67107 -33.28551 -30.82987 -30.31647 -28.76084 -27.42367 -27.11574 -23.03909 -22.50179 -21.09256 -20.02670 -18.83921 -17.26801 -17.11876 -16.31398 -15.79989 -15.55109 -14.76660 -14.17347 -13.90905 -13.66260 -13.23684 -13.13406 -12.78849 -12.65435 -12.61884 -12.50591 -12.25903 -12.20219 -11.77227 -11.72385 -11.53184 -11.48424 -11.41673 -11.02173 -10.88066 -10.67474 -10.60855 -10.33442 -10.05852 -9.66564 -8.66939 -8.29479 -8.09853 -7.65597 -6.52967 -5.43677 1.94357 2.08076 2.41390 2.69882 2.75900 2.88075 3.39299 3.87415 4.03205 4.08052 4.26505 4.44348 4.52133 4.75923 4.99204 5.19378 5.24418 5.35630 5.50400 5.55466 5.62935 5.77459 5.84681 6.02598 6.08679 6.21710 6.26578 6.37272 6.45289 6.61698 6.92387 7.06102 7.08703 7.12855 7.28492 7.31222 7.48019 7.56399 7.73764 7.84595 8.42958 8.60414 8.99787 9.14752 9.23156 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.013617 B = 0.006465 C = 0.005225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.766525 B = 4329.734219 C = 5357.864902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.139 3.861 3 H 0.079 0.921 4 N -0.842 5.842 5 C -0.149 4.149 6 C -0.076 4.076 7 C -0.186 4.186 8 C 0.264 3.736 9 N -0.662 5.662 10 C 0.384 3.616 11 C -0.377 4.377 12 H 0.108 0.892 13 C 0.072 3.928 14 N -0.714 5.714 15 Si 0.923 3.077 16 H -0.259 1.259 17 H -0.267 1.267 18 H -0.249 1.249 19 C -0.316 4.316 20 C 0.325 3.675 21 N -0.536 5.536 22 C 0.311 3.689 23 N -0.536 5.536 24 C -0.178 4.178 25 C -0.069 4.069 26 H 0.049 0.951 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.340 0.660 30 H 0.335 0.665 31 H 0.109 0.891 32 H 0.113 0.887 33 H 0.399 0.601 34 H 0.300 0.700 35 H 0.127 0.873 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.462 8.743 -6.554 14.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.028 3.972 3 H 0.097 0.903 4 N -0.372 5.372 5 C -0.151 4.151 6 C -0.095 4.095 7 C -0.209 4.209 8 C 0.160 3.840 9 N -0.282 5.282 10 C 0.280 3.720 11 C -0.405 4.405 12 H 0.126 0.874 13 C -0.160 4.160 14 N -0.333 5.333 15 Si 0.745 3.255 16 H -0.183 1.183 17 H -0.192 1.192 18 H -0.172 1.172 19 C -0.335 4.335 20 C 0.017 3.983 21 N -0.218 5.218 22 C 0.004 3.996 23 N -0.219 5.219 24 C -0.200 4.200 25 C -0.088 4.088 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.154 0.846 30 H 0.147 0.853 31 H 0.127 0.873 32 H 0.131 0.869 33 H 0.235 0.765 34 H 0.112 0.888 35 H 0.145 0.855 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.438 8.012 -6.144 12.541 hybrid contribution -2.104 0.176 0.228 2.124 sum -9.542 8.189 -5.916 13.896 Atomic orbital electron populations 1.22635 0.97762 1.02023 1.01636 1.20134 0.91380 0.97293 0.88439 0.90306 1.58961 1.67565 1.06868 1.03763 1.19206 1.07022 0.93560 0.95333 1.20475 0.97979 0.98352 0.92674 1.20411 1.08669 0.92511 0.99264 1.17450 0.90207 0.90627 0.85689 1.41436 1.62241 1.05429 1.19093 1.16733 0.90316 0.80494 0.84489 1.20332 0.90624 0.98318 1.31252 0.87424 1.26444 1.03270 0.93985 0.92262 1.69529 1.36123 1.06919 1.20699 0.85957 0.78267 0.80262 0.81005 1.18304 1.19185 1.17222 1.13028 0.85737 0.83866 1.50822 1.24729 0.91985 0.91324 0.90223 1.81054 1.08964 1.12214 1.19597 1.25179 0.91735 0.92418 0.90240 1.81073 1.11437 1.09494 1.19852 1.20807 1.05879 1.00347 0.92976 1.20447 0.98311 0.93362 0.96701 0.93231 0.92652 0.92029 0.84647 0.85318 0.87320 0.86919 0.76473 0.88838 0.85471 0.87496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.90 9.46 37.16 0.35 -1.55 16 2 C 0.14 1.65 3.61 -68.87 -0.25 1.40 16 3 H 0.08 0.91 8.00 -51.93 -0.42 0.50 16 4 N -0.84 -9.35 9.12 -5.66 -0.05 -9.40 16 5 C -0.15 -2.20 4.96 -104.58 -0.52 -2.72 16 6 C -0.08 -1.14 9.66 -39.61 -0.38 -1.52 16 7 C -0.19 -3.09 9.91 -39.38 -0.39 -3.48 16 8 C 0.26 4.81 4.93 -83.75 -0.41 4.40 16 9 N -0.66 -12.59 3.28 -8.18 -0.03 -12.61 16 10 C 0.38 7.86 4.86 -83.55 -0.41 7.45 16 11 C -0.38 -7.57 7.22 -38.32 -0.28 -7.85 16 12 H 0.11 2.21 6.99 -52.49 -0.37 1.85 16 13 C 0.07 1.33 5.09 -17.20 -0.09 1.24 16 14 N -0.71 -13.14 10.70 55.60 0.60 -12.55 16 15 Si 0.92 14.69 29.57 -169.99 -5.03 9.67 16 16 H -0.26 -4.16 7.11 56.52 0.40 -3.76 16 17 H -0.27 -4.19 7.11 56.52 0.40 -3.79 16 18 H -0.25 -4.05 7.11 56.52 0.40 -3.65 16 19 C -0.32 -6.91 5.88 -104.94 -0.62 -7.52 16 20 C 0.33 7.44 13.90 -22.48 -0.31 7.13 16 21 N -0.54 -12.74 18.54 41.83 0.78 -11.96 16 22 C 0.31 7.09 14.82 -22.47 -0.33 6.76 16 23 N -0.54 -12.73 18.54 41.85 0.78 -11.95 16 24 C -0.18 -3.22 8.79 -39.38 -0.35 -3.57 16 25 C -0.07 -1.09 9.26 -39.61 -0.37 -1.46 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.34 3.63 7.20 -39.29 -0.28 3.34 16 30 H 0.33 2.94 9.04 -39.29 -0.36 2.58 16 31 H 0.11 1.39 8.03 -52.48 -0.42 0.97 16 32 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 33 H 0.40 7.38 8.84 -40.82 -0.36 7.02 16 34 H 0.30 5.06 8.29 -40.82 -0.34 4.73 16 35 H 0.13 2.42 6.48 -52.48 -0.34 2.08 16 36 H 0.11 1.48 6.59 -52.48 -0.35 1.13 16 LS Contribution 325.35 15.07 4.90 4.90 Total: -1.00 -24.33 325.35 -6.12 -30.45 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -3.71 Total: 14.74 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -4.35 Total: -1.29 kcal Atomic # 7 Polarization: -60.55 SS G_CDS: 2.07 Total: -58.48 kcal Atomic # 14 Polarization: 14.69 SS G_CDS: -5.03 Total: 9.67 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -24.33 -6.12 -30.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169084138.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.791 kcal (2) G-P(sol) polarization free energy of solvation -24.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds