Wall clock time and date at job start Tue Mar 31 2020 05:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46765 * 2 1 4 4 N 1.46891 * 109.47026 * 239.99945 * 2 1 3 5 5 C 1.50699 * 109.47150 * 119.99853 * 2 1 3 6 6 C 1.38290 * 119.92561 * 260.00226 * 5 2 1 7 7 C 1.38103 * 120.07924 * 179.97438 * 6 5 2 8 8 C 1.38926 * 119.92082 * 0.02643 * 7 6 5 9 9 N 1.39734 * 120.07514 * 179.97438 * 8 7 6 10 10 C 1.38290 * 119.99818 * 169.74745 * 9 8 7 11 11 C 1.39006 * 120.00297 * 298.56933 * 10 9 8 12 12 H 1.07994 * 120.00097 * 159.47816 * 11 10 9 13 13 C 1.40831 * 119.99902 * 339.47699 * 11 10 9 14 14 N 1.30344 * 120.00077 * 355.64604 * 13 11 10 15 15 Si 1.86799 * 120.00183 * 175.63774 * 13 11 10 16 16 H 1.48502 * 109.46776 * 90.00257 * 15 13 11 17 17 H 1.48494 * 109.47508 * 210.00234 * 15 13 11 18 18 H 1.48507 * 109.46714 * 330.00600 * 15 13 11 19 19 C 1.41167 * 120.00013 * 118.57318 * 10 9 8 20 20 C 1.43198 * 120.00191 * 185.26757 * 19 10 9 21 21 N 9.25683 * 106.15309 * 146.68092 * 2 1 3 22 22 C 1.43198 * 119.99718 * 5.26618 * 19 10 9 23 23 N 8.20058 * 129.42510 * 127.40329 * 2 1 3 24 24 C 1.38923 * 119.84771 * 0.24391 * 8 7 6 25 25 C 1.38096 * 119.92421 * 359.45653 * 24 8 7 26 26 H 1.08996 * 109.47498 * 60.00092 * 1 2 3 27 27 H 1.08995 * 109.46837 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46955 * 300.00107 * 1 2 3 29 29 H 1.00898 * 110.99971 * 296.04734 * 4 2 1 30 30 H 1.00903 * 111.00057 * 59.99868 * 4 2 1 31 31 H 1.08003 * 119.96227 * 359.97438 * 6 5 2 32 32 H 1.07995 * 120.03966 * 180.02562 * 7 6 5 33 33 H 0.97003 * 119.99478 * 350.02933 * 9 8 7 34 34 H 0.96994 * 119.99833 * 185.03853 * 14 13 11 35 35 H 1.08003 * 120.03694 * 179.75112 * 24 8 7 36 36 H 1.08003 * 119.96351 * 180.31636 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0324 -0.7104 1.2305 6 6 2.4585 0.0213 2.3238 7 6 2.9190 -0.6264 3.4533 8 6 2.9543 -2.0147 3.4900 9 7 3.4201 -2.6734 4.6310 10 6 3.2597 -4.0415 4.7534 11 6 1.9839 -4.5931 4.7708 12 1 1.8438 -5.6375 4.5344 13 6 0.8740 -3.7898 5.0969 14 7 1.0509 -2.5519 5.4646 15 14 -0.8518 -4.4984 5.0021 16 1 -1.2139 -5.0965 6.3123 17 1 -1.8134 -3.4170 4.6690 18 1 -0.8999 -5.5452 3.9498 19 6 4.3918 -4.8781 4.8606 20 6 4.2319 -6.3011 4.8738 21 7 4.1053 -7.4299 4.8840 22 6 5.7000 -4.3036 4.9563 23 7 6.7380 -3.8478 5.0321 24 6 2.5307 -2.7466 2.3878 25 6 2.0657 -2.0925 1.2640 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.7502 -1.6648 -1.1908 30 1 1.6961 -0.2349 -2.0385 31 1 2.4312 1.1006 2.2945 32 1 3.2512 -0.0544 4.3069 33 1 3.8522 -2.1704 5.3389 34 1 0.2947 -2.0207 5.7591 35 1 2.5606 -3.8259 2.4115 36 1 1.7314 -2.6609 0.4086 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169084138.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:31 Heat of formation + Delta-G solvation = 64.832726 kcal Electronic energy + Delta-G solvation = -21066.249934 eV Core-core repulsion = 17935.162659 eV Total energy + Delta-G solvation = -3131.087275 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.118 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.65004 -38.84581 -37.20120 -36.52523 -36.16898 -34.71937 -32.30892 -31.58005 -29.78558 -28.74541 -28.58847 -24.23788 -23.83027 -22.51346 -21.21338 -20.44454 -18.86619 -18.43237 -17.75048 -16.96500 -16.93853 -15.90123 -15.40616 -15.19836 -14.72525 -14.61731 -14.43391 -14.26621 -14.14807 -13.90595 -13.84845 -13.59141 -13.45078 -13.38523 -13.37343 -13.17840 -12.98535 -12.69103 -12.62515 -12.33014 -12.04851 -11.72772 -11.59689 -11.42216 -11.04041 -9.70253 -9.57654 -9.49056 -9.09215 -7.93489 -7.10755 0.50351 0.79515 1.09318 1.37719 1.50722 1.55431 2.05415 2.09487 2.23939 2.38933 2.64989 2.92674 3.21631 3.45268 3.85722 3.88803 4.03826 4.17578 4.35548 4.45968 4.48405 4.60823 4.73770 4.75683 4.85988 4.93897 5.05999 5.16393 5.28916 5.36094 5.44839 5.63703 5.74588 5.82912 5.97438 6.11124 6.22587 6.35748 6.38108 6.73108 6.95128 7.10099 7.24564 7.36563 7.78010 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.013617 B = 0.006465 C = 0.005225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.766525 B = 4329.734219 C = 5357.864902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.141 3.859 3 H 0.087 0.913 4 N -0.851 5.851 5 C -0.144 4.144 6 C -0.078 4.078 7 C -0.192 4.192 8 C 0.242 3.758 9 N -0.663 5.663 10 C 0.380 3.620 11 C -0.373 4.373 12 H 0.099 0.901 13 C 0.048 3.952 14 N -0.712 5.712 15 Si 0.975 3.025 16 H -0.258 1.258 17 H -0.257 1.257 18 H -0.256 1.256 19 C -0.333 4.333 20 C 0.329 3.671 21 N -0.560 5.560 22 C 0.318 3.682 23 N -0.561 5.561 24 C -0.198 4.198 25 C -0.073 4.073 26 H 0.070 0.930 27 H 0.048 0.952 28 H 0.057 0.943 29 H 0.341 0.659 30 H 0.350 0.650 31 H 0.136 0.864 32 H 0.121 0.879 33 H 0.398 0.602 34 H 0.310 0.690 35 H 0.109 0.891 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.481 10.495 -7.591 17.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.030 3.970 3 H 0.105 0.895 4 N -0.382 5.382 5 C -0.146 4.146 6 C -0.097 4.097 7 C -0.214 4.214 8 C 0.141 3.859 9 N -0.284 5.284 10 C 0.275 3.725 11 C -0.400 4.400 12 H 0.117 0.883 13 C -0.184 4.184 14 N -0.330 5.330 15 Si 0.795 3.205 16 H -0.183 1.183 17 H -0.181 1.181 18 H -0.180 1.180 19 C -0.352 4.352 20 C 0.023 3.977 21 N -0.243 5.243 22 C 0.013 3.987 23 N -0.245 5.245 24 C -0.220 4.220 25 C -0.092 4.092 26 H 0.089 0.911 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.155 0.845 30 H 0.164 0.836 31 H 0.153 0.847 32 H 0.139 0.861 33 H 0.235 0.765 34 H 0.123 0.877 35 H 0.127 0.873 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.451 9.799 -7.201 15.401 hybrid contribution -1.590 -0.240 0.479 1.678 sum -11.041 9.559 -6.722 16.077 Atomic orbital electron populations 1.22562 0.96445 1.01914 1.02522 1.20124 0.92287 0.97204 0.87388 0.89491 1.58923 1.67895 1.07170 1.04218 1.19602 1.05394 0.93252 0.96400 1.20831 0.96962 0.99819 0.92071 1.20611 1.08644 0.91917 1.00249 1.17636 0.91445 0.91376 0.85481 1.41358 1.62817 1.04749 1.19504 1.16709 0.89975 0.81208 0.84624 1.20475 0.91286 0.98211 1.30066 0.88275 1.26934 1.05149 0.94217 0.92077 1.69514 1.37410 1.07149 1.18958 0.85198 0.75031 0.79694 0.80587 1.18252 1.18060 1.17967 1.13126 0.85909 0.83588 1.52594 1.24903 0.91494 0.91504 0.89792 1.81032 1.09566 1.12678 1.21054 1.25302 0.91695 0.91976 0.89748 1.81054 1.11921 1.10164 1.21332 1.20812 1.07396 0.99657 0.94103 1.20669 0.97851 0.94217 0.96490 0.91149 0.93249 0.92376 0.84453 0.83646 0.84666 0.86145 0.76549 0.87721 0.87283 0.85847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.10 9.46 71.98 0.68 -2.42 16 2 C 0.14 2.92 3.61 44.17 0.16 3.08 16 3 H 0.09 1.70 8.00 -2.39 -0.02 1.68 16 4 N -0.85 -16.53 9.12 -171.81 -1.57 -18.10 16 5 C -0.14 -3.93 4.96 -19.84 -0.10 -4.03 16 6 C -0.08 -2.17 9.66 22.25 0.21 -1.95 16 7 C -0.19 -6.13 9.91 22.40 0.22 -5.91 16 8 C 0.24 8.78 4.93 38.21 0.19 8.96 16 9 N -0.66 -25.41 3.28 -179.78 -0.59 -26.00 16 10 C 0.38 15.78 4.86 39.03 0.19 15.97 16 11 C -0.37 -15.00 7.22 23.09 0.17 -14.84 16 12 H 0.10 4.12 6.99 -2.91 -0.02 4.10 16 13 C 0.05 1.71 5.09 85.55 0.44 2.14 16 14 N -0.71 -25.26 10.70 21.98 0.24 -25.03 16 15 Si 0.98 28.71 29.57 68.60 2.03 30.74 16 16 H -0.26 -7.60 7.11 99.48 0.71 -6.89 16 17 H -0.26 -7.12 7.11 99.48 0.71 -6.41 16 18 H -0.26 -7.82 7.11 99.48 0.71 -7.11 16 19 C -0.33 -14.90 5.88 -20.07 -0.12 -15.02 16 20 C 0.33 15.41 13.90 88.33 1.23 16.64 16 21 N -0.56 -27.07 18.54 19.00 0.35 -26.71 16 22 C 0.32 14.82 14.82 88.33 1.31 16.13 16 23 N -0.56 -27.10 18.54 19.01 0.35 -26.75 16 24 C -0.20 -7.12 8.79 22.40 0.20 -6.92 16 25 C -0.07 -2.23 9.26 22.25 0.21 -2.02 16 26 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.34 6.46 7.20 -89.70 -0.65 5.82 16 30 H 0.35 5.06 9.04 -89.69 -0.81 4.25 16 31 H 0.14 3.00 8.03 -2.91 -0.02 2.98 16 32 H 0.12 3.57 8.06 -2.91 -0.02 3.55 16 33 H 0.40 14.92 8.84 -92.71 -0.82 14.10 16 34 H 0.31 9.85 8.29 -92.71 -0.77 9.08 16 35 H 0.11 4.25 6.48 -2.91 -0.02 4.24 16 36 H 0.12 3.23 6.59 -2.91 -0.02 3.21 16 Total: -1.00 -51.21 325.35 4.69 -46.52 By element: Atomic # 1 Polarization: 36.61 SS G_CDS: -1.11 Total: 35.50 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: 4.98 Total: 9.82 kcal Atomic # 7 Polarization: -121.37 SS G_CDS: -1.22 Total: -122.59 kcal Atomic # 14 Polarization: 28.71 SS G_CDS: 2.03 Total: 30.74 kcal Total: -51.21 4.69 -46.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169084138.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.356 kcal (2) G-P(sol) polarization free energy of solvation -51.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds