Wall clock time and date at job start Tue Mar 31 2020 05:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.52999 * 109.47054 * 174.99886 * 4 2 1 6 6 C 1.50696 * 109.46953 * 179.97438 * 5 4 2 7 7 H 1.07997 * 120.00371 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00240 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99814 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00464 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47124 * 59.99777 * 10 8 6 12 12 H 1.48496 * 109.47137 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47008 * 300.00164 * 10 8 6 14 14 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 15 15 C 1.46899 * 111.00313 * 275.00230 * 14 2 1 16 16 H 1.09001 * 109.47092 * 34.99746 * 15 14 2 17 17 C 1.52999 * 109.47117 * 274.99668 * 15 14 2 18 18 C 1.50703 * 109.47467 * 154.99663 * 15 14 2 19 19 C 1.38230 * 120.40976 * 40.00129 * 18 15 14 20 20 N 1.31851 * 120.78985 * 180.02562 * 19 18 15 21 21 C 1.31875 * 121.74148 * 359.97438 * 20 19 18 22 22 C 1.38306 * 120.74322 * 359.97438 * 21 20 19 23 23 Cl 1.73600 * 120.42832 * 180.02562 * 22 21 20 24 24 C 1.38605 * 120.41009 * 219.72215 * 18 15 14 25 25 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 28 28 H 1.08995 * 109.46750 * 294.99553 * 4 2 1 29 29 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 30 30 H 1.08994 * 109.47518 * 299.99758 * 5 4 2 31 31 H 1.09001 * 109.47018 * 59.99856 * 5 4 2 32 32 H 0.97001 * 120.00070 * 180.02562 * 9 8 6 33 33 H 1.00902 * 111.00328 * 151.04219 * 14 2 1 34 34 H 1.09001 * 109.46980 * 59.99898 * 17 15 14 35 35 H 1.08999 * 109.47248 * 179.97438 * 17 15 14 36 36 H 1.09001 * 109.47202 * 300.00010 * 17 15 14 37 37 H 1.08000 * 119.60433 * 359.97438 * 19 18 15 38 38 H 1.07998 * 119.62601 * 180.02562 * 21 20 19 39 39 H 1.07994 * 120.79945 * 0.02562 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5648 -0.6132 -1.3138 6 6 4.0672 -1.3240 -2.5440 7 1 3.3687 -1.8044 -3.2131 8 6 5.4184 -1.3602 -2.8158 9 7 6.2689 -0.7749 -2.0012 10 14 6.0411 -2.2407 -4.3410 11 1 5.4485 -1.6150 -5.5504 12 1 7.5209 -2.1349 -4.4042 13 1 5.6487 -3.6717 -4.2814 14 7 2.0197 -0.6925 1.1993 15 6 2.0825 0.2225 2.3469 16 1 1.2577 0.9328 2.2907 17 6 3.4111 0.9808 2.3224 18 6 1.9787 -0.5678 3.6259 19 6 2.6295 -1.7806 3.7537 20 7 2.5433 -2.4784 4.8691 21 6 1.8402 -2.0536 5.9007 22 6 1.1628 -0.8490 5.8468 23 17 0.2401 -0.2974 7.2099 24 6 1.2342 -0.0848 4.6906 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.7517 -1.7714 -1.2057 29 1 1.6054 -0.2616 -2.1371 30 1 3.8532 0.4370 -1.3574 31 1 3.9994 -1.0727 -0.4261 32 1 7.2195 -0.8000 -2.1926 33 1 2.9173 -1.1205 1.0286 34 1 3.4862 1.5524 1.3973 35 1 3.4576 1.6601 3.1736 36 1 4.2360 0.2705 2.3785 37 1 3.2148 -2.1615 2.9299 38 1 1.7934 -2.6528 6.7980 39 1 0.7185 0.8615 4.6205 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172492004.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:58 Heat of formation + Delta-G solvation = -10.646286 kcal Electronic energy + Delta-G solvation = -19641.726095 eV Core-core repulsion = 16608.473298 eV Total energy + Delta-G solvation = -3033.252797 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.41900 -39.00555 -37.62351 -35.91925 -34.61002 -33.00685 -31.64166 -30.76142 -29.02017 -27.00966 -25.27648 -24.73349 -23.29386 -21.91483 -21.02320 -18.56387 -18.21300 -17.78228 -16.97897 -16.54178 -16.43897 -15.97353 -15.30927 -15.09655 -14.51288 -14.34918 -14.27735 -14.17990 -13.97520 -13.58368 -13.17646 -13.10522 -12.99225 -12.83619 -12.78870 -12.52174 -12.35004 -12.27637 -12.18327 -11.82666 -11.57846 -11.29054 -10.93191 -10.68597 -10.55500 -10.50584 -9.85967 -9.32475 -8.18432 -6.27902 -0.08149 0.13246 0.98417 1.40610 1.42330 1.50112 2.41817 2.62352 3.14340 3.19337 3.40990 3.73932 3.75652 3.91561 3.96303 4.17386 4.25724 4.32559 4.39014 4.48825 4.51788 4.71105 4.80879 4.85435 4.90678 4.99413 5.05594 5.11748 5.17374 5.25698 5.26250 5.47048 5.49958 5.57091 5.75168 5.87616 6.21732 6.28953 6.41379 6.84524 6.88449 7.40858 8.92128 Molecular weight = 282.12amu Principal moments of inertia in cm(-1) A = 0.027064 B = 0.003390 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.341485 B = 8256.814455 C = 8735.708827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.090 3.910 3 H 0.038 0.962 4 C -0.103 4.103 5 C 0.030 3.970 6 C -0.543 4.543 7 H 0.055 0.945 8 C 0.004 3.996 9 N -0.928 5.928 10 Si 0.957 3.043 11 H -0.269 1.269 12 H -0.284 1.284 13 H -0.269 1.269 14 N -0.683 5.683 15 C 0.131 3.869 16 H 0.105 0.895 17 C -0.173 4.173 18 C -0.098 4.098 19 C 0.109 3.891 20 N -0.492 5.492 21 C 0.099 3.901 22 C -0.089 4.089 23 Cl -0.047 7.047 24 C -0.062 4.062 25 H 0.061 0.939 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.052 0.948 29 H 0.056 0.944 30 H -0.013 1.013 31 H 0.001 0.999 32 H 0.262 0.738 33 H 0.342 0.658 34 H 0.053 0.947 35 H 0.078 0.922 36 H 0.046 0.954 37 H 0.151 0.849 38 H 0.181 0.819 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.217 3.512 15.973 20.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.020 4.020 3 H 0.057 0.943 4 C -0.141 4.141 5 C -0.007 4.007 6 C -0.581 4.581 7 H 0.074 0.926 8 C -0.194 4.194 9 N -0.568 5.568 10 Si 0.782 3.218 11 H -0.194 1.194 12 H -0.210 1.210 13 H -0.194 1.194 14 N -0.316 5.316 15 C 0.020 3.980 16 H 0.123 0.877 17 C -0.232 4.232 18 C -0.100 4.100 19 C -0.048 4.048 20 N -0.200 5.200 21 C -0.059 4.059 22 C -0.118 4.118 23 Cl -0.018 7.018 24 C -0.088 4.088 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.005 0.995 31 H 0.019 0.981 32 H 0.071 0.929 33 H 0.162 0.838 34 H 0.072 0.928 35 H 0.097 0.903 36 H 0.065 0.935 37 H 0.169 0.831 38 H 0.198 0.802 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -12.298 2.534 16.324 20.595 hybrid contribution 1.153 0.872 -1.073 1.800 sum -11.145 3.406 15.251 19.194 Atomic orbital electron populations 1.21733 0.93324 1.01988 1.01628 1.21517 0.96123 0.95442 0.88873 0.94350 1.21653 0.96264 0.99775 0.96407 1.18974 0.91952 0.94527 0.95246 1.21674 0.92419 1.34556 1.09489 0.92638 1.25871 0.97420 0.96338 0.99784 1.70062 1.02667 1.45277 1.38832 0.85621 0.76999 0.79323 0.79840 1.19404 1.20977 1.19397 1.60762 1.34008 1.32318 1.04511 1.20406 0.98179 0.92190 0.87175 0.87729 1.22430 0.97167 1.00978 1.02630 1.20808 0.97131 0.96149 0.95958 1.22712 0.96159 0.91253 0.94668 1.67857 1.17487 1.34044 1.00654 1.23118 0.92003 0.92935 0.97873 1.22069 1.00579 0.97635 0.91472 1.98380 1.71843 1.89262 1.42343 1.21603 0.96536 1.00382 0.90303 0.91954 0.92773 0.91941 0.92908 0.92541 0.99485 0.98067 0.92924 0.83753 0.92841 0.90322 0.93451 0.83124 0.80183 0.81667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.22 9.40 71.98 0.68 -2.54 16 2 C 0.09 2.77 2.46 44.92 0.11 2.88 16 3 H 0.04 1.22 7.11 -2.39 -0.02 1.20 16 4 C -0.10 -4.02 4.74 30.60 0.15 -3.87 16 5 C 0.03 1.50 4.80 29.85 0.14 1.65 16 6 C -0.54 -30.28 9.11 25.60 0.23 -30.05 16 7 H 0.06 3.00 7.74 -2.91 -0.02 2.98 16 8 C 0.00 0.22 5.46 84.65 0.46 0.69 16 9 N -0.93 -55.16 13.29 21.45 0.28 -54.87 16 10 Si 0.96 43.95 29.54 68.60 2.03 45.97 16 11 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 13 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 14 N -0.68 -20.32 5.52 -473.32 -2.61 -22.94 16 15 C 0.13 3.18 2.62 44.17 0.12 3.29 16 16 H 0.10 2.18 7.01 -2.39 -0.02 2.16 16 17 C -0.17 -4.46 9.13 71.98 0.66 -3.80 16 18 C -0.10 -2.29 4.97 -19.78 -0.10 -2.39 16 19 C 0.11 2.95 10.50 84.69 0.89 3.84 16 20 N -0.49 -13.28 10.36 -195.75 -2.03 -15.31 16 21 C 0.10 2.12 10.99 84.70 0.93 3.06 16 22 C -0.09 -1.73 6.34 22.42 0.14 -1.59 16 23 Cl -0.05 -0.76 28.99 -2.72 -0.08 -0.84 16 24 C -0.06 -1.20 9.63 22.49 0.22 -0.98 16 25 H 0.06 1.33 7.43 -2.39 -0.02 1.31 16 26 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 28 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 30 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 31 H 0.00 0.06 6.43 -2.39 -0.02 0.04 16 32 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 33 H 0.34 11.83 5.58 -89.69 -0.50 11.33 16 34 H 0.05 1.53 7.43 -2.39 -0.02 1.52 16 35 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.05 1.37 8.13 -2.39 -0.02 1.35 16 37 H 0.15 4.36 7.27 -2.91 -0.02 4.34 16 38 H 0.18 2.95 8.06 -2.91 -0.02 2.93 16 39 H 0.17 2.37 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -61.68 336.55 2.75 -58.93 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: 0.54 Total: 18.89 kcal Atomic # 6 Polarization: -34.45 SS G_CDS: 4.62 Total: -29.82 kcal Atomic # 7 Polarization: -88.77 SS G_CDS: -4.36 Total: -93.12 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -0.08 Total: -0.84 kcal Total: -61.68 2.75 -58.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172492004.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.280 kcal (2) G-P(sol) polarization free energy of solvation -61.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds