Wall clock time and date at job start Tue Mar 31 2020 05:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38256 * 119.99767 * 2 1 4 4 C 1.38216 * 120.00053 * 179.97438 * 3 2 1 5 5 C 1.38255 * 119.99744 * 359.97438 * 4 3 2 6 6 C 1.38212 * 120.00300 * 359.97134 * 5 4 3 7 7 C 1.38208 * 120.00214 * 180.16630 * 2 1 3 8 8 C 1.50698 * 120.00322 * 0.06609 * 7 2 1 9 9 O 1.42895 * 109.47522 * 180.21690 * 8 7 2 10 10 C 1.42895 * 114.00318 * 180.02562 * 9 8 7 11 11 H 1.09003 * 109.47286 * 329.99190 * 10 9 8 12 12 C 1.50700 * 109.47762 * 89.99431 * 10 9 8 13 13 H 1.08002 * 120.00229 * 240.00490 * 12 10 9 14 14 C 1.37879 * 119.99678 * 59.99888 * 12 10 9 15 15 N 1.31514 * 120.00267 * 0.02562 * 14 12 10 16 16 Si 1.86801 * 119.99628 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47150 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.46888 * 120.00401 * 16 14 12 19 19 H 1.48501 * 109.47002 * 239.99979 * 16 14 12 20 20 C 1.50706 * 109.47306 * 209.99582 * 10 9 8 21 21 C 1.38240 * 119.99708 * 324.72707 * 20 10 9 22 22 C 1.38236 * 119.99784 * 179.78661 * 21 20 10 23 23 C 1.38237 * 119.99745 * 0.43798 * 22 21 20 24 24 C 1.38228 * 120.00418 * 359.81146 * 23 22 21 25 25 C 1.38235 * 120.00280 * 144.99374 * 20 10 9 26 26 H 1.09008 * 109.46685 * 90.00242 * 1 2 3 27 27 H 1.09003 * 109.47192 * 209.99628 * 1 2 3 28 28 H 1.08994 * 109.47503 * 330.00090 * 1 2 3 29 29 H 1.08002 * 120.00213 * 359.97438 * 3 2 1 30 30 H 1.08005 * 120.00025 * 179.97438 * 4 3 2 31 31 H 1.07999 * 119.99759 * 179.97438 * 5 4 3 32 32 H 1.08002 * 119.99812 * 180.02562 * 6 5 4 33 33 H 1.09004 * 109.46916 * 300.21533 * 8 7 2 34 34 H 1.08997 * 109.47096 * 60.21082 * 8 7 2 35 35 H 0.96990 * 120.00009 * 180.02562 * 15 14 12 36 36 H 1.08001 * 119.99901 * 359.97438 * 21 20 10 37 37 H 1.07995 * 120.00172 * 180.26855 * 22 21 20 38 38 H 1.08002 * 119.99630 * 179.83303 * 23 22 21 39 39 H 1.08001 * 120.00226 * 180.02562 * 24 23 22 40 40 H 1.08006 * 119.99839 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0001 0.0016 6 6 3.5807 -1.1969 0.0027 7 6 2.1981 -1.1969 -0.0035 8 6 1.4447 -2.5020 -0.0088 9 8 2.3733 -3.5881 -0.0065 10 6 1.7589 -4.8782 -0.0118 11 1 0.7968 -4.8246 0.4979 12 6 1.5492 -5.3292 -1.4344 13 1 0.5525 -5.5407 -1.7925 14 6 2.6299 -5.4715 -2.2787 15 7 3.8436 -5.2143 -1.8425 16 14 2.3700 -6.0298 -4.0423 17 1 0.9216 -6.2530 -4.2825 18 1 2.8712 -4.9851 -4.9711 19 1 3.1107 -7.2957 -4.2750 20 6 2.6505 -5.8623 0.7008 21 6 4.0245 -5.7507 0.5973 22 6 4.8425 -6.6507 1.2545 23 6 4.2863 -7.6676 2.0079 24 6 2.9124 -7.7822 2.1073 25 6 2.0945 -6.8797 1.4535 26 1 -0.3633 0.0000 -1.0278 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5138 29 1 1.6582 2.1327 -0.0004 30 1 4.1204 2.1328 0.0001 31 1 5.3516 0.0002 0.0016 32 1 4.1208 -2.1322 0.0040 33 1 0.8143 -2.5612 0.8785 34 1 0.8218 -2.5584 -0.9014 35 1 4.6038 -5.3140 -2.4366 36 1 4.4589 -4.9587 0.0054 37 1 5.9159 -6.5610 1.1772 38 1 4.9254 -8.3723 2.5192 39 1 2.4779 -8.5764 2.6962 40 1 1.0209 -6.9691 1.5312 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204660292.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:39 Heat of formation + Delta-G solvation = 4.546231 kcal Electronic energy + Delta-G solvation = -21718.900965 eV Core-core repulsion = 18656.447063 eV Total energy + Delta-G solvation = -3062.453902 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.12445 -38.19391 -36.22108 -33.09127 -32.49967 -31.09486 -30.12574 -29.57311 -26.98365 -26.53344 -25.19016 -22.88127 -21.48902 -21.20432 -20.33977 -20.01363 -16.76697 -16.27616 -15.71657 -15.37927 -14.91362 -14.50869 -14.32676 -14.17434 -13.90096 -13.27483 -13.18537 -13.11099 -12.68729 -12.46136 -12.13457 -12.08244 -11.96129 -11.59749 -11.50238 -11.18809 -10.98819 -10.81219 -10.50808 -10.49641 -10.16556 -10.08207 -9.78685 -9.21475 -8.74842 -8.38730 -8.29889 -7.93858 -7.71936 -7.41836 -5.95611 -4.28719 1.74782 1.85679 2.49828 2.65311 3.23701 3.32213 3.34519 4.19041 4.33069 4.76522 5.06125 5.16675 5.22098 5.27136 5.48432 5.52629 5.61493 5.80191 5.83469 5.92479 5.99051 6.00644 6.08668 6.16085 6.24598 6.36433 6.40328 6.50064 6.58393 6.60618 6.80314 6.86358 6.90497 7.03997 7.14654 7.17960 7.33414 7.48089 7.54558 7.64692 7.86663 8.05019 8.08878 8.32545 8.54041 8.94067 9.46887 10.88636 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.014081 B = 0.005930 C = 0.005080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.082146 B = 4720.798032 C = 5510.620896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.092 4.092 3 C -0.130 4.130 4 C -0.131 4.131 5 C -0.132 4.132 6 C -0.082 4.082 7 C -0.071 4.071 8 C 0.109 3.891 9 O -0.365 6.365 10 C 0.246 3.754 11 H 0.017 0.983 12 C -0.544 4.544 13 H 0.060 0.940 14 C 0.086 3.914 15 N -0.846 5.846 16 Si 0.889 3.111 17 H -0.273 1.273 18 H -0.282 1.282 19 H -0.283 1.283 20 C -0.040 4.040 21 C -0.044 4.044 22 C -0.154 4.154 23 C -0.146 4.146 24 C -0.150 4.150 25 C -0.130 4.130 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.116 0.884 32 H 0.141 0.859 33 H 0.039 0.961 34 H 0.056 0.944 35 H 0.261 0.739 36 H 0.165 0.835 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.486 7.172 4.724 8.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.092 4.092 3 C -0.148 4.148 4 C -0.149 4.149 5 C -0.150 4.150 6 C -0.100 4.100 7 C -0.071 4.071 8 C 0.032 3.968 9 O -0.284 6.284 10 C 0.190 3.810 11 H 0.035 0.965 12 C -0.580 4.580 13 H 0.078 0.922 14 C -0.120 4.120 15 N -0.481 5.481 16 Si 0.717 3.283 17 H -0.198 1.198 18 H -0.208 1.208 19 H -0.209 1.209 20 C -0.041 4.041 21 C -0.063 4.063 22 C -0.173 4.173 23 C -0.165 4.165 24 C -0.169 4.169 25 C -0.148 4.148 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.132 0.868 30 H 0.131 0.869 31 H 0.134 0.866 32 H 0.159 0.841 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.182 0.818 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.109 7.197 4.653 8.641 hybrid contribution -0.272 -0.602 -1.164 1.338 sum -1.380 6.595 3.488 7.588 Atomic orbital electron populations 1.20784 0.91700 1.02409 1.02205 1.19638 0.95750 0.92586 1.01247 1.20821 0.94212 0.96839 1.02894 1.21005 0.94258 0.97695 1.01920 1.21159 0.99614 0.92679 1.01585 1.21234 0.94011 0.98655 0.96132 1.19856 0.94425 0.93843 0.99000 1.20887 0.91634 0.85414 0.98879 1.87968 1.31974 1.13573 1.94923 1.18545 0.88781 0.79845 0.93828 0.96513 1.21458 0.93648 1.47465 0.95474 0.92182 1.24958 0.95041 0.93626 0.98396 1.69806 0.98288 1.45876 1.34161 0.86596 0.78447 0.78397 0.84902 1.19763 1.20782 1.20865 1.19993 0.95081 0.96242 0.92798 1.21864 0.93077 0.99222 0.92108 1.21154 0.98896 0.97382 0.99851 1.20813 0.94764 0.99239 1.01657 1.20692 0.93783 0.99887 1.02490 1.20789 0.98560 0.96500 0.98975 0.91292 0.91381 0.92054 0.86789 0.86915 0.86622 0.84090 0.94281 0.92617 0.92859 0.81843 0.88090 0.88342 0.88071 0.87886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.47 9.60 36.01 0.35 -1.12 16 2 C -0.09 -1.45 5.88 -104.63 -0.62 -2.06 16 3 C -0.13 -1.85 9.70 -39.58 -0.38 -2.23 16 4 C -0.13 -1.86 10.05 -39.58 -0.40 -2.26 16 5 C -0.13 -2.09 10.05 -39.58 -0.40 -2.49 16 6 C -0.08 -1.54 9.38 -39.58 -0.37 -1.91 16 7 C -0.07 -1.31 5.88 -104.63 -0.62 -1.93 16 8 C 0.11 2.17 4.86 36.00 0.17 2.35 16 9 O -0.37 -8.55 7.01 -35.23 -0.25 -8.79 16 10 C 0.25 5.94 2.59 -29.03 -0.08 5.87 16 11 H 0.02 0.39 7.70 -51.93 -0.40 -0.01 16 12 C -0.54 -14.24 8.89 -34.44 -0.31 -14.54 16 13 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 14 C 0.09 2.24 5.24 -17.82 -0.09 2.15 16 15 N -0.85 -22.20 8.50 55.43 0.47 -21.73 16 16 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 17 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 20 C -0.04 -0.96 4.80 -104.62 -0.50 -1.46 16 21 C -0.04 -1.03 7.46 -39.58 -0.30 -1.33 16 22 C -0.15 -3.24 10.05 -39.58 -0.40 -3.64 16 23 C -0.15 -2.85 10.05 -39.59 -0.40 -3.25 16 24 C -0.15 -2.94 10.05 -39.59 -0.40 -3.34 16 25 C -0.13 -2.79 9.68 -39.58 -0.38 -3.17 16 26 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 27 H 0.07 0.87 6.64 -51.93 -0.34 0.53 16 28 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 29 H 0.11 1.32 8.06 -52.49 -0.42 0.89 16 30 H 0.11 1.29 8.06 -52.48 -0.42 0.86 16 31 H 0.12 1.59 8.06 -52.49 -0.42 1.16 16 32 H 0.14 2.91 7.01 -52.49 -0.37 2.54 16 33 H 0.04 0.72 7.42 -51.93 -0.39 0.34 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 36 H 0.16 4.13 5.50 -52.49 -0.29 3.84 16 37 H 0.10 1.90 8.06 -52.49 -0.42 1.47 16 38 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 39 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 40 H 0.10 2.02 8.06 -52.48 -0.42 1.60 16 LS Contribution 331.72 15.07 5.00 5.00 Total: -1.00 -27.57 331.72 -10.46 -38.04 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -5.56 Total: 6.22 kcal Atomic # 6 Polarization: -29.27 SS G_CDS: -5.11 Total: -34.38 kcal Atomic # 7 Polarization: -22.20 SS G_CDS: 0.47 Total: -21.73 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: -0.25 Total: -8.79 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -27.57 -10.46 -38.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204660292.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.583 kcal (2) G-P(sol) polarization free energy of solvation -27.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds