Wall clock time and date at job start Tue Mar 31 2020 05:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38252 * 120.00542 * 2 1 4 4 C 1.38211 * 120.00637 * 180.02562 * 3 2 1 5 5 C 1.38265 * 119.99452 * 359.94869 * 4 3 2 6 6 C 1.38209 * 119.99896 * 359.97438 * 5 4 3 7 7 C 1.38220 * 119.99469 * 180.16313 * 2 1 3 8 8 C 1.50695 * 120.00494 * 0.04799 * 7 2 1 9 9 O 1.42898 * 109.47194 * 180.18996 * 8 7 2 10 10 C 1.42901 * 113.99657 * 179.97438 * 9 8 7 11 11 H 1.08996 * 109.47276 * 29.99741 * 10 9 8 12 12 C 1.50701 * 109.47180 * 269.99686 * 10 9 8 13 13 H 1.08003 * 119.99971 * 304.93663 * 12 10 9 14 14 C 1.37868 * 120.00218 * 124.93643 * 12 10 9 15 15 N 1.31513 * 120.00113 * 184.79385 * 14 12 10 16 16 Si 1.86806 * 120.00033 * 4.79249 * 14 12 10 17 17 H 1.48504 * 109.47163 * 84.63025 * 16 14 12 18 18 H 1.48497 * 109.47158 * 204.63301 * 16 14 12 19 19 H 1.48500 * 109.46953 * 324.63119 * 16 14 12 20 20 C 1.50705 * 109.46781 * 149.99740 * 10 9 8 21 21 C 1.38231 * 119.99960 * 34.87015 * 20 10 9 22 22 C 1.38241 * 119.99687 * 179.78739 * 21 20 10 23 23 C 1.38236 * 119.99921 * 0.43894 * 22 21 20 24 24 C 1.38231 * 119.99872 * 359.81194 * 23 22 21 25 25 C 1.38228 * 120.00252 * 359.97438 * 24 23 22 26 26 H 1.09006 * 109.47299 * 89.99953 * 1 2 3 27 27 H 1.09001 * 109.47532 * 210.00553 * 1 2 3 28 28 H 1.09002 * 109.47221 * 330.00540 * 1 2 3 29 29 H 1.08003 * 119.99646 * 359.97438 * 3 2 1 30 30 H 1.07995 * 120.00701 * 179.97438 * 4 3 2 31 31 H 1.08001 * 119.99778 * 179.97438 * 5 4 3 32 32 H 1.08004 * 119.99558 * 180.02562 * 6 5 4 33 33 H 1.09005 * 109.46881 * 300.19221 * 8 7 2 34 34 H 1.08996 * 109.47165 * 60.18479 * 8 7 2 35 35 H 0.97000 * 120.00224 * 179.97438 * 15 14 12 36 36 H 1.07993 * 120.00186 * 359.97438 * 21 20 10 37 37 H 1.08005 * 119.99699 * 180.26911 * 22 21 20 38 38 H 1.07999 * 119.99258 * 179.83707 * 23 22 21 39 39 H 1.08001 * 119.99517 * 180.02562 * 24 23 22 40 40 H 1.08007 * 120.00137 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1972 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 -0.0002 0.0000 6 6 3.5806 -1.1971 0.0016 7 6 2.1980 -1.1971 -0.0034 8 6 1.4445 -2.5021 -0.0082 9 8 2.3731 -3.5883 -0.0066 10 6 1.7584 -4.8783 -0.0103 11 1 0.8004 -4.8229 -0.5271 12 6 1.5378 -5.3338 1.4092 13 1 2.3676 -5.3711 2.0995 14 6 0.2767 -5.7027 1.8267 15 7 0.0651 -6.0095 3.0879 16 14 -1.1315 -5.7668 0.6009 17 1 -1.1239 -7.0794 -0.0936 18 1 -2.4203 -5.5936 1.3181 19 1 -0.9697 -4.6783 -0.3962 20 6 2.6555 -5.8601 -0.7192 21 6 4.0287 -5.7441 -0.6114 22 6 4.8515 -6.6473 -1.2581 23 6 4.3012 -7.6611 -2.0199 24 6 2.9281 -7.7739 -2.1319 25 6 2.1052 -6.8734 -1.4817 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3634 0.8900 0.5138 29 1 1.6584 2.1326 -0.0004 30 1 4.1206 2.1325 -0.0010 31 1 5.3517 -0.0002 -0.0008 32 1 4.1206 -2.1324 0.0024 33 1 0.8146 -2.5612 0.8794 34 1 0.8210 -2.5584 -0.9005 35 1 -0.8222 -6.2688 3.3817 36 1 4.4587 -4.9497 -0.0195 37 1 5.9244 -6.5593 -1.1703 38 1 4.9442 -8.3651 -2.5272 39 1 2.4981 -8.5662 -2.7267 40 1 1.0323 -6.9618 -1.5688 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204660293.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:42 Heat of formation + Delta-G solvation = -3.548566 kcal Electronic energy + Delta-G solvation = -21443.310536 eV Core-core repulsion = 18380.505617 eV Total energy + Delta-G solvation = -3062.804918 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.30837 -38.62407 -36.60450 -33.10439 -32.64951 -31.57317 -30.52045 -30.19633 -27.29548 -26.76027 -25.41734 -22.90329 -21.93840 -21.47811 -20.45660 -20.08915 -17.28350 -16.55517 -16.03353 -15.87863 -14.98145 -14.73341 -14.52626 -14.39978 -14.19711 -13.52806 -13.40666 -13.19705 -12.83491 -12.78979 -12.64503 -12.37884 -12.09680 -12.08381 -11.78318 -11.59493 -11.15488 -11.03642 -10.72003 -10.63124 -10.45805 -10.32640 -9.85607 -9.42188 -8.85071 -8.72401 -8.46588 -8.27051 -8.17054 -7.80278 -6.29190 -4.31633 1.60702 1.69917 2.04911 2.09540 3.09042 3.15173 3.19805 4.03733 4.17875 4.37204 4.59254 5.05654 5.08736 5.12516 5.30200 5.38028 5.49225 5.49561 5.53540 5.66316 5.73984 5.80961 5.91636 5.96553 5.97969 6.10441 6.20166 6.20925 6.26675 6.38071 6.42782 6.49926 6.67226 6.71757 6.74183 6.83973 6.99788 7.09447 7.19782 7.30740 7.36869 7.42147 7.69084 8.12630 8.40969 8.84446 9.31542 10.83169 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.013151 B = 0.006276 C = 0.004743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.580185 B = 4460.499367 C = 5902.289547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.088 4.088 3 C -0.125 4.125 4 C -0.129 4.129 5 C -0.131 4.131 6 C -0.090 4.090 7 C -0.073 4.073 8 C 0.109 3.891 9 O -0.389 6.389 10 C 0.206 3.794 11 H 0.039 0.961 12 C -0.520 4.520 13 H 0.083 0.917 14 C 0.080 3.920 15 N -0.881 5.881 16 Si 0.863 3.137 17 H -0.268 1.268 18 H -0.282 1.282 19 H -0.262 1.262 20 C -0.033 4.033 21 C -0.102 4.102 22 C -0.126 4.126 23 C -0.147 4.147 24 C -0.122 4.122 25 C -0.127 4.127 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.117 0.883 30 H 0.115 0.885 31 H 0.117 0.883 32 H 0.135 0.865 33 H 0.066 0.934 34 H 0.046 0.954 35 H 0.268 0.732 36 H 0.122 0.878 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.608 8.107 -8.957 12.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.088 4.088 3 C -0.143 4.143 4 C -0.147 4.147 5 C -0.149 4.149 6 C -0.107 4.107 7 C -0.073 4.073 8 C 0.033 3.967 9 O -0.309 6.309 10 C 0.151 3.849 11 H 0.057 0.943 12 C -0.557 4.557 13 H 0.101 0.899 14 C -0.125 4.125 15 N -0.518 5.518 16 Si 0.689 3.311 17 H -0.193 1.193 18 H -0.208 1.208 19 H -0.188 1.188 20 C -0.033 4.033 21 C -0.120 4.120 22 C -0.144 4.144 23 C -0.165 4.165 24 C -0.141 4.141 25 C -0.146 4.146 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.135 0.865 30 H 0.133 0.867 31 H 0.135 0.865 32 H 0.153 0.847 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.140 0.860 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.130 0.870 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.654 8.061 -8.806 12.485 hybrid contribution -1.089 -0.266 -0.373 1.181 sum 2.566 7.795 -9.178 12.312 Atomic orbital electron populations 1.20835 0.91529 1.03026 1.02167 1.19648 0.95895 0.92476 1.00760 1.20865 0.94230 0.96929 1.02316 1.21030 0.94256 0.97772 1.01610 1.21141 0.99618 0.92619 1.01508 1.21104 0.93851 0.98432 0.97353 1.19821 0.94384 0.93769 0.99318 1.20962 0.91414 0.84411 0.99932 1.87737 1.33610 1.14258 1.95274 1.19220 0.90513 0.79657 0.95530 0.94331 1.21281 0.96120 1.44260 0.94028 0.89943 1.25086 0.98250 0.94209 0.94939 1.69885 1.22858 1.44400 1.14673 0.87102 0.82432 0.79562 0.81956 1.19315 1.20783 1.18754 1.20211 0.94547 0.96132 0.92427 1.20932 0.93177 0.98801 0.99090 1.21063 0.99069 0.95792 0.98439 1.20888 0.94897 0.99317 1.01387 1.20919 0.93751 0.98967 1.00414 1.20858 0.99305 0.96129 0.98259 0.91328 0.91045 0.91693 0.86524 0.86683 0.86474 0.84735 0.91589 0.93607 0.92174 0.86009 0.87031 0.87203 0.87015 0.87174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.55 9.60 36.01 0.35 -1.21 16 2 C -0.09 -1.34 5.88 -104.62 -0.62 -1.95 16 3 C -0.13 -1.68 9.70 -39.59 -0.38 -2.07 16 4 C -0.13 -1.68 10.05 -39.58 -0.40 -2.07 16 5 C -0.13 -1.86 10.05 -39.58 -0.40 -2.26 16 6 C -0.09 -1.51 9.38 -39.58 -0.37 -1.88 16 7 C -0.07 -1.28 5.88 -104.62 -0.62 -1.90 16 8 C 0.11 2.16 4.85 36.00 0.17 2.34 16 9 O -0.39 -8.59 7.60 -35.23 -0.27 -8.86 16 10 C 0.21 4.86 2.25 -29.03 -0.07 4.79 16 11 H 0.04 0.91 4.03 -51.93 -0.21 0.70 16 12 C -0.52 -14.23 9.17 -34.44 -0.32 -14.54 16 13 H 0.08 2.52 8.06 -52.48 -0.42 2.10 16 14 C 0.08 2.19 5.47 -17.82 -0.10 2.10 16 15 N -0.88 -25.87 13.96 55.43 0.77 -25.10 16 16 Si 0.86 20.11 27.33 -169.99 -4.65 15.47 16 17 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.26 -5.74 6.20 56.52 0.35 -5.39 16 20 C -0.03 -0.71 4.99 -104.62 -0.52 -1.23 16 21 C -0.10 -2.03 9.35 -39.58 -0.37 -2.40 16 22 C -0.13 -2.15 10.05 -39.58 -0.40 -2.55 16 23 C -0.15 -2.38 10.05 -39.58 -0.40 -2.78 16 24 C -0.12 -2.11 10.05 -39.59 -0.40 -2.51 16 25 C -0.13 -2.55 9.68 -39.59 -0.38 -2.94 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.07 1.00 6.64 -51.93 -0.34 0.66 16 28 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 29 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 30 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 31 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 32 H 0.13 2.36 7.01 -52.48 -0.37 1.99 16 33 H 0.07 1.39 7.48 -51.93 -0.39 1.01 16 34 H 0.05 0.86 8.08 -51.93 -0.42 0.44 16 35 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.12 2.41 7.62 -52.49 -0.40 2.01 16 37 H 0.11 1.59 8.06 -52.48 -0.42 1.16 16 38 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 39 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 40 H 0.11 2.16 8.01 -52.48 -0.42 1.74 16 LS Contribution 335.56 15.07 5.06 5.06 Total: -1.00 -29.62 335.56 -9.83 -39.45 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -5.54 Total: 7.04 kcal Atomic # 6 Polarization: -27.85 SS G_CDS: -5.21 Total: -33.06 kcal Atomic # 7 Polarization: -25.87 SS G_CDS: 0.77 Total: -25.10 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: -0.27 Total: -8.86 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -4.65 Total: 15.47 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.62 -9.83 -39.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204660293.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.899 kcal (2) G-P(sol) polarization free energy of solvation -29.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds