Wall clock time and date at job start Tue Mar 31 2020 05:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37953 * 119.92787 * 2 1 4 4 C 1.50702 * 120.07632 * 0.04030 * 3 2 1 5 5 C 1.39586 * 119.85175 * 180.02562 * 3 2 1 6 6 C 1.47983 * 120.14366 * 180.02562 * 5 3 2 7 7 C 1.39939 * 119.88510 * 235.74151 * 6 5 3 8 8 C 1.36248 * 120.12191 * 179.72292 * 7 6 5 9 9 C 1.40929 * 119.88088 * 0.54586 * 8 7 6 10 10 C 1.41027 * 120.12033 * 179.70019 * 9 8 7 11 11 H 1.07999 * 120.00075 * 24.19737 * 10 9 8 12 12 C 1.40017 * 119.99894 * 204.19274 * 10 9 8 13 13 N 1.30798 * 120.00209 * 18.68512 * 12 10 9 14 14 Si 1.86798 * 119.99871 * 198.69080 * 12 10 9 15 15 H 1.48504 * 109.47127 * 89.99721 * 14 12 10 16 16 H 1.48500 * 109.46933 * 209.99960 * 14 12 10 17 17 H 1.48498 * 109.47230 * 329.99891 * 14 12 10 18 18 C 1.40936 * 119.76284 * 359.73021 * 9 8 7 19 19 C 1.36256 * 119.87381 * 359.97438 * 18 9 8 20 20 C 1.39620 * 119.71312 * 0.02562 * 5 3 2 21 21 C 1.37923 * 119.85161 * 359.74373 * 20 5 3 22 22 C 1.38373 * 119.92250 * 180.02562 * 2 1 3 23 23 C 1.50696 * 119.85866 * 359.95226 * 22 2 1 24 24 O 1.42893 * 109.47228 * 180.02562 * 23 22 2 25 25 H 1.09000 * 109.47681 * 269.97946 * 1 2 3 26 26 H 1.09006 * 109.47207 * 29.97901 * 1 2 3 27 27 H 1.09000 * 109.47351 * 149.97977 * 1 2 3 28 28 H 1.09000 * 109.46744 * 82.97517 * 4 3 2 29 29 H 1.08994 * 109.47187 * 202.97350 * 4 3 2 30 30 H 1.09007 * 109.46613 * 322.97714 * 4 3 2 31 31 H 1.08004 * 119.93412 * 359.97438 * 7 6 5 32 32 H 1.08002 * 120.06368 * 180.27653 * 8 7 6 33 33 H 0.96995 * 120.00289 * 179.97438 * 13 12 10 34 34 H 1.07995 * 120.06414 * 179.97438 * 18 9 8 35 35 H 1.08000 * 119.93836 * 180.02562 * 19 18 9 36 36 H 1.07995 * 120.07860 * 180.02562 * 20 5 3 37 37 H 1.07994 * 119.92828 * 180.27571 * 21 20 5 38 38 H 1.09000 * 109.46457 * 60.00271 * 23 22 2 39 39 H 1.08998 * 109.47470 * 300.00539 * 23 22 2 40 40 H 0.96698 * 114.00085 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1956 0.0000 4 6 1.4419 2.5007 0.0009 5 6 3.5911 1.1937 -0.0005 6 6 4.3359 2.4724 0.0000 7 6 5.2767 2.7319 -1.0030 8 6 5.9611 3.9099 -1.0103 9 6 5.7286 4.8633 0.0012 10 6 6.4388 6.0817 0.0020 11 1 6.8480 6.4689 -0.9194 12 6 6.6132 6.7895 1.1974 13 7 6.4568 6.1828 2.3456 14 14 7.0690 8.6005 1.1526 15 1 5.8320 9.4221 1.1364 16 1 7.8722 8.9386 2.3550 17 1 7.8651 8.8805 -0.0693 18 6 4.7842 4.5945 1.0122 19 6 4.1009 3.4157 1.0066 20 6 4.2815 -0.0198 -0.0016 21 6 3.5813 -1.2081 0.0032 22 6 2.1972 -1.1993 -0.0005 23 6 1.4388 -2.5015 0.0000 24 8 2.3632 -3.5911 -0.0001 25 1 -0.3634 -0.0004 1.0276 26 1 -0.3634 0.8902 -0.5135 27 1 -0.3634 -0.8898 -0.5141 28 1 1.1520 2.7522 1.0211 29 1 2.0793 3.2885 -0.4003 30 1 0.5492 2.4053 -0.6174 31 1 5.4575 1.9985 -1.7750 32 1 6.6837 4.1110 -1.7874 33 1 6.5780 6.6730 3.1737 34 1 4.6025 5.3215 1.7899 35 1 3.3767 3.2088 1.7807 36 1 5.3615 -0.0281 -0.0016 37 1 4.1141 -2.1474 0.0069 38 1 0.8113 -2.5567 -0.8896 39 1 0.8125 -2.5569 0.8903 40 1 1.9440 -4.4625 -0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204962333.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:17 Heat of formation + Delta-G solvation = -26.785768 kcal Electronic energy + Delta-G solvation = -21028.495832 eV Core-core repulsion = 17964.683273 eV Total energy + Delta-G solvation = -3063.812559 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.57378 -37.59461 -36.56567 -34.04224 -32.96598 -32.36522 -29.57815 -29.39575 -27.63162 -26.52947 -25.70305 -24.18462 -21.37091 -20.78126 -20.23785 -19.30528 -17.45940 -17.35660 -15.86666 -15.32087 -15.11499 -15.04792 -14.67547 -13.99638 -13.76235 -13.40290 -13.29438 -12.90645 -12.58995 -12.54274 -12.38598 -12.13522 -12.01042 -11.77652 -11.48233 -11.35146 -11.16382 -11.10804 -10.91250 -10.60587 -10.40432 -10.27710 -10.23292 -9.64300 -9.42207 -9.17406 -8.14343 -8.06280 -7.55297 -7.16570 -6.84794 -4.39695 1.69880 1.87377 2.73098 3.02574 3.06074 3.11160 3.16423 3.86227 4.16891 4.18218 4.56068 5.01620 5.18269 5.24440 5.31233 5.39491 5.50500 5.58614 5.65563 5.68604 5.82375 5.97214 6.08934 6.13717 6.20669 6.28947 6.33767 6.39961 6.57483 6.74471 6.87312 6.95174 6.98752 7.01119 7.17690 7.24518 7.36646 7.49788 7.56040 7.58756 7.89935 8.00196 8.09970 8.22995 8.56896 8.80906 8.91992 10.07325 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.035306 B = 0.003554 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.883373 B = 7876.501871 C = 8223.459805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.085 4.085 3 C -0.090 4.090 4 C -0.111 4.111 5 C 0.017 3.983 6 C -0.200 4.200 7 C -0.066 4.066 8 C -0.231 4.231 9 C 0.118 3.882 10 C -0.456 4.456 11 H 0.080 0.920 12 C 0.076 3.924 13 N -0.783 5.783 14 Si 0.909 3.091 15 H -0.266 1.266 16 H -0.277 1.277 17 H -0.261 1.261 18 C -0.173 4.173 19 C -0.073 4.073 20 C -0.130 4.130 21 C -0.097 4.097 22 C -0.122 4.122 23 C 0.126 3.874 24 O -0.569 6.569 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.056 0.944 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.283 0.717 34 H 0.117 0.883 35 H 0.087 0.913 36 H 0.118 0.882 37 H 0.123 0.877 38 H 0.052 0.948 39 H 0.052 0.948 40 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.900 -10.390 -1.994 14.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.085 4.085 3 C -0.090 4.090 4 C -0.167 4.167 5 C 0.017 3.983 6 C -0.202 4.202 7 C -0.084 4.084 8 C -0.250 4.250 9 C 0.115 3.885 10 C -0.484 4.484 11 H 0.098 0.902 12 C -0.143 4.143 13 N -0.407 5.407 14 Si 0.733 3.267 15 H -0.191 1.191 16 H -0.202 1.202 17 H -0.185 1.185 18 C -0.192 4.192 19 C -0.091 4.091 20 C -0.148 4.148 21 C -0.115 4.115 22 C -0.122 4.122 23 C 0.049 3.951 24 O -0.374 6.374 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.098 0.902 30 H 0.075 0.925 31 H 0.106 0.894 32 H 0.111 0.889 33 H 0.094 0.906 34 H 0.135 0.865 35 H 0.105 0.895 36 H 0.136 0.864 37 H 0.141 0.859 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -9.437 -9.845 -1.729 13.746 hybrid contribution -0.048 0.270 0.161 0.318 sum -9.484 -9.575 -1.567 13.568 Atomic orbital electron populations 1.20827 0.92045 1.02386 1.01895 1.19254 0.95143 0.91912 1.02181 1.19789 0.93190 0.94198 1.01844 1.20831 0.99299 0.95189 1.01430 1.18948 0.91664 0.93232 0.94484 1.17990 1.05637 0.95027 1.01510 1.20295 0.95232 0.96341 0.96524 1.20651 1.05187 0.95558 1.03623 1.17676 0.89210 0.91402 0.90221 1.19644 1.29923 1.04132 0.94744 0.90226 1.25983 0.93055 1.00404 0.94902 1.69824 1.34675 1.37441 0.98784 0.86294 0.79393 0.82068 0.78919 1.19140 1.20230 1.18505 1.20978 0.98678 0.97421 1.02099 1.20417 0.98493 0.93987 0.96220 1.21346 0.99729 0.91675 1.02016 1.20764 0.93370 0.97871 0.99482 1.19322 0.94170 0.92495 1.06225 1.20811 0.90152 0.84789 0.99324 1.86490 1.36463 1.16715 1.97735 0.91531 0.91175 0.92290 0.91937 0.90223 0.92492 0.89434 0.88947 0.90643 0.86496 0.89469 0.86397 0.85945 0.92975 0.93011 0.77689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.32 9.18 36.01 0.33 -0.99 16 2 C -0.08 -1.31 5.87 -104.68 -0.61 -1.92 16 3 C -0.09 -1.60 5.88 -104.22 -0.61 -2.21 16 4 C -0.11 -1.79 8.21 36.01 0.30 -1.50 16 5 C 0.02 0.33 5.40 -104.89 -0.57 -0.23 16 6 C -0.20 -4.48 4.51 -104.63 -0.47 -4.95 16 7 C -0.07 -1.50 9.53 -39.66 -0.38 -1.87 16 8 C -0.23 -5.64 9.73 -39.28 -0.38 -6.03 16 9 C 0.12 3.09 5.58 -106.80 -0.60 2.49 16 10 C -0.46 -11.86 9.03 -37.86 -0.34 -12.20 16 11 H 0.08 1.99 7.91 -52.49 -0.42 1.58 16 12 C 0.08 1.86 5.12 -17.33 -0.09 1.77 16 13 N -0.78 -19.84 10.97 55.55 0.61 -19.23 16 14 Si 0.91 18.21 29.60 -169.99 -5.03 13.18 16 15 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 16 H -0.28 -5.44 7.11 56.52 0.40 -5.03 16 17 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 18 C -0.17 -4.41 8.64 -39.27 -0.34 -4.75 16 19 C -0.07 -1.69 7.92 -39.66 -0.31 -2.01 16 20 C -0.13 -2.42 9.62 -39.18 -0.38 -2.80 16 21 C -0.10 -1.64 9.36 -39.63 -0.37 -2.01 16 22 C -0.12 -1.88 5.89 -104.51 -0.62 -2.49 16 23 C 0.13 1.46 6.14 36.00 0.22 1.68 16 24 O -0.57 -6.42 12.12 -35.23 -0.43 -6.85 16 25 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.07 0.77 6.06 -51.93 -0.31 0.45 16 27 H 0.06 0.57 6.62 -51.93 -0.34 0.22 16 28 H 0.06 0.95 8.13 -51.93 -0.42 0.53 16 29 H 0.08 1.46 6.20 -51.93 -0.32 1.14 16 30 H 0.06 0.77 6.25 -51.92 -0.32 0.45 16 31 H 0.09 1.82 8.06 -52.48 -0.42 1.40 16 32 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 33 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 34 H 0.12 3.08 6.15 -52.49 -0.32 2.75 16 35 H 0.09 1.89 7.72 -52.49 -0.41 1.49 16 36 H 0.12 2.15 8.06 -52.49 -0.42 1.73 16 37 H 0.12 1.95 6.99 -52.49 -0.37 1.59 16 38 H 0.05 0.52 7.48 -51.93 -0.39 0.13 16 39 H 0.05 0.52 8.13 -51.93 -0.42 0.10 16 40 H 0.38 2.21 9.12 45.56 0.42 2.63 16 LS Contribution 327.01 15.07 4.93 4.93 Total: -1.00 -28.75 327.01 -9.60 -38.35 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -4.46 Total: 9.64 kcal Atomic # 6 Polarization: -34.80 SS G_CDS: -5.22 Total: -40.02 kcal Atomic # 7 Polarization: -19.84 SS G_CDS: 0.61 Total: -19.23 kcal Atomic # 8 Polarization: -6.42 SS G_CDS: -0.43 Total: -6.85 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.03 Total: 13.18 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.75 -9.60 -38.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204962333.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.569 kcal (2) G-P(sol) polarization free energy of solvation -28.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds