Wall clock time and date at job start Tue Mar 31 2020 05:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38265 * 119.99809 * 2 1 4 4 C 1.38210 * 119.99921 * 179.97438 * 3 2 1 5 5 C 1.38251 * 120.00211 * 359.73939 * 4 3 2 6 6 C 1.38224 * 119.99905 * 0.51638 * 5 4 3 7 7 C 1.38203 * 120.00348 * 179.97438 * 2 1 3 8 8 C 1.50704 * 120.00114 * 359.97438 * 7 2 1 9 9 H 1.09001 * 109.47226 * 326.85730 * 8 7 2 10 10 O 1.42897 * 109.47423 * 206.85472 * 8 7 2 11 11 C 1.42901 * 113.99833 * 90.00006 * 10 8 7 12 12 C 1.50701 * 109.46737 * 180.02562 * 11 10 8 13 13 H 1.07999 * 120.00568 * 0.02562 * 12 11 10 14 14 C 1.37882 * 119.99803 * 180.02562 * 12 11 10 15 15 N 1.31510 * 119.99678 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 119.99956 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47419 * 59.99824 * 16 14 12 18 18 H 1.48501 * 109.47038 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47395 * 299.99620 * 16 14 12 20 20 C 1.50705 * 109.46651 * 86.85233 * 8 7 2 21 21 C 1.38238 * 119.99474 * 75.46770 * 20 8 7 22 22 C 1.38239 * 119.99278 * 179.80783 * 21 20 8 23 23 C 1.38229 * 120.00341 * 0.41481 * 22 21 20 24 24 C 1.38238 * 120.00036 * 359.81744 * 23 22 21 25 25 C 1.38231 * 120.00148 * 255.72978 * 20 8 7 26 26 H 1.09000 * 109.47012 * 264.75583 * 1 2 3 27 27 H 1.08997 * 109.47321 * 24.76237 * 1 2 3 28 28 H 1.09001 * 109.46402 * 144.75693 * 1 2 3 29 29 H 1.08000 * 120.00011 * 359.97438 * 3 2 1 30 30 H 1.08004 * 119.99627 * 180.02562 * 4 3 2 31 31 H 1.07991 * 120.00458 * 180.28461 * 5 4 3 32 32 H 1.07990 * 120.00021 * 179.76521 * 6 5 4 33 33 H 1.08997 * 109.47396 * 299.99772 * 11 10 8 34 34 H 1.09001 * 109.46732 * 60.00541 * 11 10 8 35 35 H 0.97002 * 119.99881 * 180.02562 * 15 14 12 36 36 H 1.07998 * 120.00642 * 359.97438 * 21 20 8 37 37 H 1.08005 * 119.99743 * 180.20240 * 22 21 20 38 38 H 1.08001 * 120.00367 * 179.79200 * 23 22 21 39 39 H 1.08001 * 120.00242 * 179.97438 * 24 23 22 40 40 H 1.08002 * 120.00323 * 359.97438 * 25 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1975 0.0005 5 6 4.2717 0.0002 0.0065 6 6 3.5807 -1.1969 0.0012 7 6 2.1981 -1.1968 0.0005 8 6 1.4447 -2.5020 0.0017 9 1 0.5180 -2.3862 0.5638 10 8 2.2477 -3.5151 0.6107 11 6 2.0640 -3.6315 2.0230 12 6 2.9553 -4.7231 2.5571 13 1 3.5980 -5.2727 1.8853 14 6 2.9502 -5.0202 3.9035 15 7 2.1679 -4.3507 4.7216 16 14 4.0553 -6.3728 4.5657 17 1 5.4733 -6.0390 4.2773 18 1 3.8644 -6.4939 6.0333 19 1 3.7074 -7.6604 3.9129 20 6 1.1255 -2.8989 -1.4167 21 6 2.1181 -3.4115 -2.2309 22 6 1.8244 -3.7793 -3.5307 23 6 0.5402 -3.6265 -4.0189 24 6 -0.4513 -3.1095 -3.2061 25 6 -0.1585 -2.7454 -1.9051 26 1 -0.3633 -0.0939 1.0234 27 1 -0.3634 0.9331 -0.4304 28 1 -0.3632 -0.8393 -0.5930 29 1 1.6583 2.1327 -0.0004 30 1 4.1204 2.1329 0.0010 31 1 5.3516 0.0002 0.0116 32 1 4.1207 -2.1321 0.0020 33 1 2.3207 -2.6866 2.5019 34 1 1.0231 -3.8756 2.2351 35 1 2.1645 -4.5595 5.6689 36 1 3.1224 -3.5272 -1.8508 37 1 2.5991 -4.1828 -4.1659 38 1 0.3115 -3.9107 -5.0354 39 1 -1.4545 -2.9897 -3.5876 40 1 -0.9331 -2.3414 -1.2701 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205604188.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:25 Heat of formation + Delta-G solvation = -4.709757 kcal Electronic energy + Delta-G solvation = -21650.719756 eV Core-core repulsion = 18587.864484 eV Total energy + Delta-G solvation = -3062.855271 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.90939 -38.47303 -36.57087 -33.22557 -32.62542 -31.60968 -30.68333 -30.10504 -27.46822 -26.69025 -25.18334 -22.75604 -22.08098 -21.85471 -21.22649 -19.99278 -16.97155 -16.56226 -16.08841 -15.88902 -15.08804 -14.91959 -14.64304 -14.45307 -13.89000 -13.82643 -13.63912 -13.31149 -13.10662 -12.76855 -12.50564 -12.31191 -12.08681 -11.97712 -11.73183 -11.21899 -11.07817 -10.95466 -10.85497 -10.73987 -10.56640 -10.39582 -10.07981 -9.17024 -8.95745 -8.69621 -8.56906 -8.39180 -8.24744 -8.19515 -6.11825 -4.13851 1.48392 1.63011 1.70930 1.78820 3.31294 3.34227 3.37692 3.98184 4.09285 4.32091 4.67895 5.05281 5.07467 5.12704 5.15933 5.24618 5.29377 5.31946 5.32913 5.47141 5.52779 5.72213 5.77314 5.82219 5.86974 5.93801 6.01177 6.10637 6.15835 6.28730 6.36419 6.45421 6.64791 6.71261 6.78165 6.86665 6.88160 6.98165 7.13694 7.20682 7.36358 7.41891 7.77259 8.12500 8.51023 8.97652 9.50614 10.99512 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.012930 B = 0.005785 C = 0.004684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.920416 B = 4838.551140 C = 5976.786823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.079 4.079 3 C -0.129 4.129 4 C -0.123 4.123 5 C -0.131 4.131 6 C -0.082 4.082 7 C -0.093 4.093 8 C 0.164 3.836 9 H 0.070 0.930 10 O -0.376 6.376 11 C 0.197 3.803 12 C -0.515 4.515 13 H 0.066 0.934 14 C 0.058 3.942 15 N -0.897 5.897 16 Si 0.907 3.093 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.275 1.275 20 C -0.063 4.063 21 C -0.086 4.086 22 C -0.125 4.125 23 C -0.127 4.127 24 C -0.125 4.125 25 C -0.116 4.116 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.116 0.884 30 H 0.115 0.885 31 H 0.118 0.882 32 H 0.132 0.868 33 H 0.008 0.992 34 H 0.005 0.995 35 H 0.265 0.735 36 H 0.127 0.873 37 H 0.119 0.881 38 H 0.116 0.884 39 H 0.119 0.881 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.894 8.455 -13.958 16.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.079 4.079 3 C -0.147 4.147 4 C -0.141 4.141 5 C -0.149 4.149 6 C -0.100 4.100 7 C -0.094 4.094 8 C 0.105 3.895 9 H 0.088 0.912 10 O -0.296 6.296 11 C 0.123 3.877 12 C -0.553 4.553 13 H 0.084 0.916 14 C -0.143 4.143 15 N -0.536 5.536 16 Si 0.734 3.266 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.200 1.200 20 C -0.063 4.063 21 C -0.104 4.104 22 C -0.143 4.143 23 C -0.145 4.145 24 C -0.143 4.143 25 C -0.134 4.134 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.134 0.866 30 H 0.133 0.867 31 H 0.136 0.864 32 H 0.150 0.850 33 H 0.025 0.975 34 H 0.023 0.977 35 H 0.074 0.926 36 H 0.145 0.855 37 H 0.137 0.863 38 H 0.134 0.866 39 H 0.137 0.863 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.821 8.345 -13.850 16.414 hybrid contribution 0.409 -0.450 0.769 0.980 sum -2.412 7.896 -13.081 15.468 Atomic orbital electron populations 1.21009 0.91818 1.02784 1.02613 1.19686 0.95785 0.92624 0.99802 1.20885 0.94252 0.96957 1.02600 1.21035 0.94266 0.97754 1.01057 1.21111 0.99653 0.92561 1.01567 1.21083 0.93764 0.98467 0.96709 1.20263 0.94501 0.94465 1.00159 1.19516 0.93667 0.85928 0.90362 0.91236 1.87912 1.63381 1.53010 1.25283 1.20265 0.96337 0.96725 0.74371 1.20976 1.23669 1.17907 0.92761 0.91590 1.24927 0.96011 0.96945 0.96458 1.69952 1.38527 1.40941 1.04169 0.86416 0.80794 0.81836 0.77567 1.20015 1.21144 1.20003 1.19770 0.93502 0.98219 0.94856 1.21047 0.99837 0.96563 0.92947 1.21138 0.96695 1.00601 0.95855 1.21073 0.93490 1.00420 0.99517 1.21009 0.99045 1.00155 0.94089 1.21023 0.95803 1.00570 0.95982 0.91013 0.91836 0.90880 0.86604 0.86676 0.86418 0.85034 0.97452 0.97695 0.92590 0.85526 0.86325 0.86556 0.86341 0.86023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.66 9.06 36.01 0.33 -1.33 16 2 C -0.08 -1.25 5.88 -104.62 -0.62 -1.87 16 3 C -0.13 -1.85 9.68 -39.58 -0.38 -2.23 16 4 C -0.12 -1.74 10.05 -39.59 -0.40 -2.14 16 5 C -0.13 -2.03 10.05 -39.58 -0.40 -2.42 16 6 C -0.08 -1.48 9.35 -39.58 -0.37 -1.85 16 7 C -0.09 -1.69 4.94 -104.62 -0.52 -2.20 16 8 C 0.16 3.14 1.94 -29.03 -0.06 3.09 16 9 H 0.07 1.33 6.44 -51.93 -0.33 1.00 16 10 O -0.38 -8.83 8.35 -35.23 -0.29 -9.12 16 11 C 0.20 5.34 5.49 36.01 0.20 5.54 16 12 C -0.51 -14.97 9.43 -34.44 -0.32 -15.30 16 13 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 15 N -0.90 -26.77 13.29 55.43 0.74 -26.03 16 16 Si 0.91 21.80 29.54 -169.99 -5.02 16.78 16 17 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 19 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 20 C -0.06 -1.07 4.88 -104.62 -0.51 -1.58 16 21 C -0.09 -1.40 9.32 -39.58 -0.37 -1.76 16 22 C -0.12 -1.70 10.05 -39.58 -0.40 -2.10 16 23 C -0.13 -1.57 10.05 -39.58 -0.40 -1.97 16 24 C -0.12 -1.57 10.05 -39.58 -0.40 -1.97 16 25 C -0.12 -1.67 8.53 -39.59 -0.34 -2.01 16 26 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.06 0.69 8.05 -51.93 -0.42 0.27 16 28 H 0.07 0.93 3.85 -51.93 -0.20 0.73 16 29 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 30 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 31 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 32 H 0.13 2.49 7.40 -52.49 -0.39 2.10 16 33 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 34 H 0.01 0.15 8.08 -51.93 -0.42 -0.27 16 35 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.13 2.12 7.91 -52.49 -0.42 1.71 16 37 H 0.12 1.34 8.06 -52.48 -0.42 0.91 16 38 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 39 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 40 H 0.12 1.54 6.37 -52.49 -0.33 1.21 16 LS Contribution 335.55 15.07 5.06 5.06 Total: -1.00 -31.43 335.55 -10.00 -41.44 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -5.44 Total: 2.42 kcal Atomic # 6 Polarization: -25.50 SS G_CDS: -5.04 Total: -30.54 kcal Atomic # 7 Polarization: -26.77 SS G_CDS: 0.74 Total: -26.03 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -0.29 Total: -9.12 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.43 -10.00 -41.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205604188.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.727 kcal (2) G-P(sol) polarization free energy of solvation -31.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds