Wall clock time and date at job start Tue Mar 31 2020 05:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38253 * 119.99897 * 2 1 4 4 C 1.38220 * 119.99868 * 180.22597 * 3 2 1 5 5 C 1.38258 * 119.99560 * 359.82253 * 4 3 2 6 6 C 1.38205 * 120.00605 * 359.96809 * 5 4 3 7 7 C 1.38212 * 120.00048 * 179.79491 * 2 1 3 8 8 C 1.50704 * 119.99732 * 359.97438 * 7 2 1 9 9 H 1.08992 * 109.47643 * 324.72902 * 8 7 2 10 10 C 1.53004 * 109.46946 * 84.73215 * 8 7 2 11 11 O 1.42902 * 109.47072 * 204.72803 * 8 7 2 12 12 C 1.35670 * 117.00132 * 154.21215 * 11 8 7 13 13 C 1.39316 * 119.82078 * 185.29687 * 12 11 8 14 14 C 1.36436 * 120.18535 * 179.72665 * 13 12 11 15 15 C 1.40831 * 119.81397 * 0.27737 * 14 13 12 16 16 C 1.41222 * 120.18243 * 180.02562 * 15 14 13 17 17 H 1.07999 * 120.00042 * 204.77154 * 16 15 14 18 18 C 1.39890 * 119.99773 * 24.76642 * 16 15 14 19 19 N 1.30879 * 119.99882 * 16.47936 * 18 16 15 20 20 Si 1.86800 * 119.99718 * 196.47657 * 18 16 15 21 21 H 1.48502 * 109.46943 * 60.00307 * 20 18 16 22 22 H 1.48497 * 109.46625 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47051 * 300.00083 * 20 18 16 24 24 C 1.40836 * 119.63849 * 0.02562 * 15 14 13 25 25 C 1.36431 * 119.81253 * 359.97438 * 24 15 14 26 26 H 1.08999 * 109.47219 * 270.20717 * 1 2 3 27 27 H 1.09004 * 109.46672 * 30.21129 * 1 2 3 28 28 H 1.09002 * 109.46827 * 150.20394 * 1 2 3 29 29 H 1.08000 * 120.00166 * 0.07067 * 3 2 1 30 30 H 1.07998 * 120.00104 * 179.83617 * 4 3 2 31 31 H 1.08000 * 119.99531 * 179.97438 * 5 4 3 32 32 H 1.07996 * 120.00648 * 179.97438 * 6 5 4 33 33 H 1.09000 * 109.46854 * 299.99740 * 10 8 7 34 34 H 1.09001 * 109.46798 * 59.99859 * 10 8 7 35 35 H 1.09003 * 109.47027 * 179.97438 * 10 8 7 36 36 H 1.08002 * 119.90559 * 0.02562 * 13 12 11 37 37 H 1.08004 * 120.09496 * 180.30172 * 14 13 12 38 38 H 0.96999 * 119.99685 * 180.02562 * 19 18 16 39 39 H 1.08007 * 120.08902 * 179.97438 * 24 15 14 40 40 H 1.08008 * 119.90689 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 -0.0047 5 6 4.2717 -0.0001 -0.0057 6 6 3.5807 -1.1970 -0.0014 7 6 2.1981 -1.1969 0.0043 8 6 1.4446 -2.5020 0.0095 9 1 0.5366 -2.3950 0.6028 10 6 1.0743 -2.8829 -1.4253 11 8 2.2664 -3.5243 0.5767 12 6 1.6317 -4.5776 1.1498 13 6 2.3706 -5.5520 1.8173 14 6 1.7395 -6.6114 2.4011 15 6 0.3377 -6.7214 2.3225 16 6 -0.3236 -7.8145 2.9244 17 1 -1.2883 -8.1311 2.5565 18 6 0.2712 -8.4872 3.9971 19 7 1.2595 -7.9317 4.6509 20 14 -0.3454 -10.1784 4.4963 21 1 -0.1938 -11.1171 3.3557 22 1 0.4449 -10.6718 5.6526 23 1 -1.7778 -10.0902 4.8778 24 6 -0.4011 -5.7354 1.6403 25 6 0.2453 -4.6823 1.0620 26 1 -0.3633 0.0037 1.0276 27 1 -0.3633 0.8881 -0.5171 28 1 -0.3633 -0.8918 -0.5107 29 1 1.6583 2.1326 0.0012 30 1 4.1205 2.1326 -0.0074 31 1 5.3517 -0.0001 -0.0098 32 1 4.1206 -2.1323 -0.0026 33 1 0.4475 -2.1031 -1.8579 34 1 1.9824 -2.9900 -2.0186 35 1 0.5296 -3.8271 -1.4216 36 1 3.4455 -5.4659 1.8770 37 1 2.3133 -7.3634 2.9224 38 1 1.6721 -8.3983 5.3944 39 1 -1.4765 -5.8128 1.5752 40 1 -0.3198 -3.9255 0.5381 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225267579.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:29 Heat of formation + Delta-G solvation = -4.047392 kcal Electronic energy + Delta-G solvation = -21101.348102 eV Core-core repulsion = 18038.521553 eV Total energy + Delta-G solvation = -3062.826549 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.92270 -38.51707 -36.46482 -33.62402 -33.11974 -31.92134 -29.85456 -29.04268 -28.94614 -26.93838 -24.97824 -23.63845 -22.02683 -21.32986 -20.55617 -19.82218 -17.43418 -17.06797 -16.47722 -15.26071 -15.13391 -14.97624 -14.59102 -14.20456 -13.95426 -13.74077 -13.40919 -13.08081 -12.84678 -12.60136 -12.30067 -12.21327 -12.11451 -11.88548 -11.77870 -11.38670 -11.33622 -11.10079 -11.02914 -10.88385 -10.61899 -10.37131 -9.96424 -9.80054 -9.30357 -9.02565 -8.72050 -8.52160 -7.62451 -7.00172 -6.69931 -4.24674 1.37206 1.46861 2.80253 2.96688 3.08536 3.11070 3.23029 3.78442 3.95827 4.06370 4.64006 4.82730 4.86550 4.99356 5.13525 5.25744 5.35154 5.46117 5.55464 5.59757 5.69401 5.71515 5.74355 5.90797 6.02802 6.07938 6.09045 6.20381 6.24197 6.37789 6.51216 6.59196 6.66690 6.81008 7.00044 7.06820 7.13403 7.21232 7.49664 7.57463 7.81408 8.01689 8.22306 8.47688 8.67191 8.91492 9.00410 10.24139 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.034639 B = 0.003445 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.140384 B = 8126.093479 C = 8452.531702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.079 4.079 3 C -0.125 4.125 4 C -0.122 4.122 5 C -0.130 4.130 6 C -0.089 4.089 7 C -0.077 4.077 8 C 0.127 3.873 9 H 0.077 0.923 10 C -0.171 4.171 11 O -0.319 6.319 12 C -0.005 4.005 13 C -0.121 4.121 14 C -0.133 4.133 15 C 0.088 3.912 16 C -0.464 4.464 17 H 0.075 0.925 18 C 0.074 3.926 19 N -0.801 5.801 20 Si 0.908 3.092 21 H -0.264 1.264 22 H -0.279 1.279 23 H -0.267 1.267 24 C -0.197 4.197 25 C -0.169 4.169 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.120 0.880 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.131 0.869 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.096 0.904 37 H 0.127 0.873 38 H 0.280 0.720 39 H 0.094 0.906 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.739 12.835 -7.751 15.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.079 4.079 3 C -0.143 4.143 4 C -0.140 4.140 5 C -0.148 4.148 6 C -0.107 4.107 7 C -0.077 4.077 8 C 0.070 3.930 9 H 0.095 0.905 10 C -0.228 4.228 11 O -0.235 6.235 12 C -0.048 4.048 13 C -0.140 4.140 14 C -0.152 4.152 15 C 0.085 3.915 16 C -0.494 4.494 17 H 0.094 0.906 18 C -0.142 4.142 19 N -0.427 5.427 20 Si 0.733 3.267 21 H -0.189 1.189 22 H -0.204 1.204 23 H -0.191 1.191 24 C -0.217 4.217 25 C -0.187 4.187 26 H 0.091 0.909 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.138 0.862 30 H 0.136 0.864 31 H 0.138 0.862 32 H 0.149 0.851 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.114 0.886 37 H 0.144 0.856 38 H 0.091 0.909 39 H 0.112 0.888 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.084 12.815 -7.552 15.020 hybrid contribution -0.434 -0.653 0.373 0.868 sum 1.651 12.162 -7.179 14.219 Atomic orbital electron populations 1.20920 0.91366 1.02904 1.02731 1.19661 0.95968 0.92343 0.99978 1.20914 0.94256 0.97048 1.02069 1.21091 0.94286 0.97904 1.00738 1.21145 0.99794 0.92511 1.01335 1.21073 0.93729 0.98464 0.97463 1.19678 0.94180 0.93317 1.00556 1.20817 0.93145 0.84736 0.94305 0.90485 1.22321 1.02189 1.02213 0.96081 1.85850 1.34855 1.30126 1.72635 1.18577 0.91000 0.90916 1.04281 1.19841 0.97837 0.95266 1.01031 1.21005 0.94813 0.98025 1.01370 1.17587 0.91708 0.91553 0.90611 1.19436 1.04801 1.11989 1.13182 0.90647 1.25868 0.94170 0.98910 0.95274 1.69817 1.20253 1.36653 1.15974 0.86375 0.79638 0.82191 0.78525 1.18915 1.20402 1.19131 1.20572 0.97712 0.96257 1.07164 1.20427 0.92902 1.00194 1.05215 0.90871 0.91504 0.91083 0.86232 0.86387 0.86229 0.85148 0.91853 0.91874 0.91154 0.88570 0.85568 0.90911 0.88793 0.88625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.33 9.22 36.01 0.33 -1.00 16 2 C -0.08 -1.03 5.88 -104.62 -0.62 -1.65 16 3 C -0.12 -1.44 9.70 -39.58 -0.38 -1.83 16 4 C -0.12 -1.38 10.05 -39.58 -0.40 -1.77 16 5 C -0.13 -1.61 10.05 -39.59 -0.40 -2.00 16 6 C -0.09 -1.31 9.35 -39.59 -0.37 -1.68 16 7 C -0.08 -1.17 5.07 -104.62 -0.53 -1.70 16 8 C 0.13 2.10 1.74 -27.88 -0.05 2.05 16 9 H 0.08 1.30 5.11 -51.93 -0.27 1.04 16 10 C -0.17 -2.47 8.97 37.16 0.33 -2.14 16 11 O -0.32 -6.48 8.62 -18.71 -0.16 -6.64 16 12 C 0.00 -0.11 6.63 -38.78 -0.26 -0.36 16 13 C -0.12 -2.93 9.92 -39.83 -0.40 -3.33 16 14 C -0.13 -3.47 8.64 -39.25 -0.34 -3.81 16 15 C 0.09 2.34 5.58 -106.80 -0.60 1.75 16 16 C -0.46 -12.34 9.05 -37.83 -0.34 -12.68 16 17 H 0.08 1.92 7.90 -52.49 -0.41 1.51 16 18 C 0.07 1.87 5.16 -17.34 -0.09 1.78 16 19 N -0.80 -20.82 10.89 55.54 0.60 -20.21 16 20 Si 0.91 18.76 29.59 -169.99 -5.03 13.73 16 21 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 22 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 23 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 24 C -0.20 -4.83 9.74 -39.25 -0.38 -5.21 16 25 C -0.17 -3.78 8.20 -39.83 -0.33 -4.11 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 28 H 0.07 0.77 5.40 -51.93 -0.28 0.49 16 29 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 30 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 31 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 32 H 0.13 1.99 7.35 -52.49 -0.39 1.60 16 33 H 0.06 0.76 6.88 -51.93 -0.36 0.41 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 1.09 6.98 -51.93 -0.36 0.72 16 36 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 37 H 0.13 3.38 6.12 -52.48 -0.32 3.06 16 38 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 39 H 0.09 2.15 8.06 -52.48 -0.42 1.73 16 40 H 0.10 1.86 5.42 -52.48 -0.28 1.57 16 LS Contribution 327.48 15.07 4.94 4.94 Total: -1.00 -28.28 327.48 -9.64 -37.92 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -5.19 Total: 7.95 kcal Atomic # 6 Polarization: -32.88 SS G_CDS: -4.81 Total: -37.69 kcal Atomic # 7 Polarization: -20.82 SS G_CDS: 0.60 Total: -20.21 kcal Atomic # 8 Polarization: -6.48 SS G_CDS: -0.16 Total: -6.64 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.28 -9.64 -37.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225267579.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.877 kcal (2) G-P(sol) polarization free energy of solvation -28.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds