Wall clock time and date at job start Tue Mar 31 2020 05:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38242 * 119.99652 * 2 1 4 4 C 1.38236 * 119.99569 * 179.97438 * 3 2 1 5 5 C 1.38226 * 120.00028 * 0.02562 * 4 3 2 6 6 C 1.50707 * 120.00045 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.46606 * 25.00407 * 6 5 4 8 8 C 1.53000 * 109.47280 * 265.00150 * 6 5 4 9 9 O 1.42899 * 109.47010 * 144.99825 * 6 5 4 10 10 C 1.35679 * 116.99892 * 203.27179 * 9 6 5 11 11 C 1.39308 * 119.81835 * 175.04304 * 10 9 6 12 12 C 1.36441 * 120.18587 * 179.76449 * 11 10 9 13 13 C 1.40836 * 119.80790 * 0.51033 * 12 11 10 14 14 C 1.41217 * 120.17555 * 179.72773 * 13 12 11 15 15 H 1.08004 * 119.99451 * 208.87495 * 14 13 12 16 16 C 1.39885 * 120.00344 * 28.86856 * 14 13 12 17 17 N 1.30873 * 120.00300 * 11.07068 * 16 14 13 18 18 Si 1.86803 * 119.99738 * 191.07398 * 16 14 13 19 19 H 1.48506 * 109.47046 * 90.00262 * 18 16 14 20 20 H 1.48506 * 109.46831 * 209.99664 * 18 16 14 21 21 H 1.48499 * 109.47344 * 329.99575 * 18 16 14 22 22 C 1.40832 * 119.64246 * 359.74107 * 13 12 11 23 23 C 1.36435 * 119.81050 * 0.02562 * 22 13 12 24 24 C 1.38237 * 120.00375 * 0.24805 * 5 4 3 25 25 C 1.38229 * 120.00244 * 179.97438 * 2 1 3 26 26 H 1.08993 * 109.46949 * 89.99798 * 1 2 3 27 27 H 1.08999 * 109.47046 * 210.00295 * 1 2 3 28 28 H 1.09005 * 109.46757 * 330.00006 * 1 2 3 29 29 H 1.07995 * 120.00212 * 359.97438 * 3 2 1 30 30 H 1.08000 * 119.99660 * 179.97438 * 4 3 2 31 31 H 1.08995 * 109.47002 * 179.97438 * 8 6 5 32 32 H 1.09000 * 109.46767 * 299.99698 * 8 6 5 33 33 H 1.08997 * 109.47258 * 59.99430 * 8 6 5 34 34 H 1.08000 * 119.90794 * 0.02562 * 11 10 9 35 35 H 1.07999 * 120.09613 * 180.25624 * 12 11 10 36 36 H 0.97002 * 120.00683 * 180.02562 * 17 16 14 37 37 H 1.08002 * 120.09386 * 179.97438 * 22 13 12 38 38 H 1.08009 * 119.90635 * 179.97438 * 23 22 13 39 39 H 1.08001 * 120.00354 * 179.73124 * 24 5 4 40 40 H 1.08003 * 119.99548 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5806 1.1972 0.0005 5 6 4.2717 0.0002 0.0005 6 6 5.7787 0.0001 0.0005 7 1 6.1420 0.9315 0.4349 8 6 6.2888 -0.1256 -1.4365 9 8 6.2550 -1.1035 0.7733 10 6 7.5074 -1.0020 1.2854 11 6 7.9920 -1.9960 2.1326 12 6 9.2520 -1.9039 2.6479 13 6 10.0592 -0.7946 2.3296 14 6 11.3624 -0.6886 2.8632 15 1 11.7998 0.2846 3.0304 16 6 12.0866 -1.8440 3.1753 17 7 11.6553 -3.0140 2.7779 18 14 13.6693 -1.7169 4.1593 19 1 13.3608 -1.8186 5.6084 20 1 14.5844 -2.8197 3.7695 21 1 14.3210 -0.4116 3.8823 22 6 9.5597 0.2084 1.4766 23 6 8.2993 0.0987 0.9659 24 6 3.5806 -1.1970 -0.0052 25 6 2.1982 -1.1971 0.0005 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5139 29 1 1.6582 2.1325 -0.0004 30 1 4.1205 2.1326 0.0001 31 1 7.3787 -0.1251 -1.4364 32 1 5.9255 -1.0570 -1.8707 33 1 5.9254 0.7162 -2.0259 34 1 7.3702 -2.8440 2.3788 35 1 9.6278 -2.6774 3.3012 36 1 12.1573 -3.8153 2.9946 37 1 10.1723 1.0625 1.2280 38 1 7.9144 0.8673 0.3119 39 1 4.1206 -2.1323 -0.0096 40 1 1.6582 -2.1324 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225268152.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:32 Heat of formation + Delta-G solvation = -6.325921 kcal Electronic energy + Delta-G solvation = -20730.759491 eV Core-core repulsion = 17667.834137 eV Total energy + Delta-G solvation = -3062.925354 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.79872 -38.60278 -36.52509 -33.79552 -33.02782 -30.89937 -30.72188 -29.40730 -28.98635 -26.72306 -24.92608 -22.99864 -22.65859 -21.36749 -20.65550 -19.89082 -17.40918 -17.02016 -16.33042 -15.24130 -15.11672 -15.01057 -14.53678 -14.25072 -13.95076 -13.81884 -13.38290 -13.32357 -12.89385 -12.51333 -12.37692 -12.32885 -12.12585 -11.78754 -11.71940 -11.60519 -11.21142 -11.15425 -10.96778 -10.87136 -10.64108 -10.46612 -9.91986 -9.77955 -9.28332 -9.06273 -8.88052 -8.48042 -7.62513 -6.94495 -6.65024 -4.25560 1.32319 1.45144 2.79926 2.96224 3.10612 3.13848 3.22178 3.72876 3.98463 4.09461 4.67569 4.76001 4.83468 4.96834 5.06244 5.22963 5.37556 5.42368 5.45794 5.53459 5.66451 5.68147 5.72516 5.84357 5.98985 6.08439 6.09504 6.12302 6.23293 6.36542 6.48644 6.58844 6.63732 6.80170 6.99977 7.03622 7.14067 7.22689 7.49417 7.58454 7.80503 8.03225 8.23268 8.47839 8.68090 8.93682 9.00750 10.29950 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.043925 B = 0.003043 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.291803 B = 9198.939347 C = 9416.478474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.094 4.094 3 C -0.123 4.123 4 C -0.109 4.109 5 C -0.080 4.080 6 C 0.128 3.872 7 H 0.074 0.926 8 C -0.171 4.171 9 O -0.318 6.318 10 C 0.001 3.999 11 C -0.124 4.124 12 C -0.125 4.125 13 C 0.086 3.914 14 C -0.465 4.465 15 H 0.075 0.925 16 C 0.072 3.928 17 N -0.809 5.809 18 Si 0.910 3.090 19 H -0.269 1.269 20 H -0.279 1.279 21 H -0.264 1.264 22 C -0.192 4.192 23 C -0.172 4.172 24 C -0.088 4.088 25 C -0.124 4.124 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.120 0.880 30 H 0.122 0.878 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.097 0.903 35 H 0.127 0.873 36 H 0.278 0.722 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.129 0.871 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.310 4.513 -5.404 16.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.094 4.094 3 C -0.141 4.141 4 C -0.127 4.127 5 C -0.080 4.080 6 C 0.071 3.929 7 H 0.091 0.909 8 C -0.229 4.229 9 O -0.234 6.234 10 C -0.042 4.042 11 C -0.143 4.143 12 C -0.145 4.145 13 C 0.084 3.916 14 C -0.495 4.495 15 H 0.093 0.907 16 C -0.143 4.143 17 N -0.436 5.436 18 Si 0.735 3.265 19 H -0.194 1.194 20 H -0.204 1.204 21 H -0.188 1.188 22 C -0.212 4.212 23 C -0.191 4.191 24 C -0.106 4.106 25 C -0.142 4.142 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.138 0.862 30 H 0.140 0.860 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.115 0.885 35 H 0.145 0.855 36 H 0.089 0.911 37 H 0.113 0.887 38 H 0.115 0.885 39 H 0.147 0.853 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -15.358 4.108 -5.383 16.784 hybrid contribution 0.948 0.173 0.277 1.002 sum -14.410 4.281 -5.105 15.876 Atomic orbital electron populations 1.20768 0.91449 1.02599 1.02064 1.19908 0.95889 0.93336 1.00237 1.20913 0.93864 0.97408 1.01966 1.20930 0.94179 0.97304 1.00258 1.19772 0.94340 0.93611 1.00255 1.20824 0.89326 0.90967 0.91776 0.90863 1.22330 1.02591 1.02254 0.95695 1.85879 1.30324 1.40651 1.66578 1.18602 0.84372 0.98230 1.02985 1.19862 0.96863 0.97656 0.99930 1.21026 0.91319 1.00578 1.01566 1.17608 0.92964 0.91114 0.89943 1.19446 0.99010 0.93424 1.37667 0.90702 1.25844 0.99458 0.94878 0.94143 1.69792 1.38351 0.99092 1.36351 0.86289 0.81006 0.78847 0.80363 1.19448 1.20412 1.18812 1.20631 0.95804 1.02010 1.02742 1.20459 0.96346 0.97821 1.04488 1.21059 0.93680 0.98388 0.97458 1.21040 0.94186 0.97412 1.01557 0.91398 0.91667 0.91727 0.86200 0.86043 0.91043 0.91896 0.91988 0.88521 0.85535 0.91074 0.88733 0.88516 0.85319 0.86201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 10.01 36.01 0.36 -0.54 16 2 C -0.09 -1.04 5.88 -104.62 -0.62 -1.66 16 3 C -0.12 -1.39 9.70 -39.58 -0.38 -1.78 16 4 C -0.11 -1.38 9.68 -39.59 -0.38 -1.76 16 5 C -0.08 -1.17 5.00 -104.62 -0.52 -1.70 16 6 C 0.13 2.11 2.44 -27.88 -0.07 2.04 16 7 H 0.07 1.21 6.27 -51.93 -0.33 0.88 16 8 C -0.17 -2.54 9.11 37.16 0.34 -2.20 16 9 O -0.32 -6.47 8.95 -18.74 -0.17 -6.64 16 10 C 0.00 0.03 6.61 -38.79 -0.26 -0.23 16 11 C -0.12 -3.01 9.92 -39.83 -0.40 -3.41 16 12 C -0.13 -3.29 8.61 -39.25 -0.34 -3.63 16 13 C 0.09 2.30 5.55 -106.80 -0.59 1.71 16 14 C -0.46 -12.42 9.05 -37.83 -0.34 -12.76 16 15 H 0.07 1.92 7.87 -52.48 -0.41 1.51 16 16 C 0.07 1.83 5.24 -17.34 -0.09 1.74 16 17 N -0.81 -21.19 10.86 55.54 0.60 -20.59 16 18 Si 0.91 18.97 29.57 -169.99 -5.03 13.95 16 19 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 20 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 21 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 22 C -0.19 -4.71 9.74 -39.25 -0.38 -5.10 16 23 C -0.17 -3.87 8.10 -39.83 -0.32 -4.19 16 24 C -0.09 -1.25 9.35 -39.58 -0.37 -1.62 16 25 C -0.12 -1.50 9.70 -39.59 -0.38 -1.89 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 28 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 29 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 30 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 31 H 0.07 1.15 6.76 -51.93 -0.35 0.80 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 35 H 0.13 3.41 6.23 -52.49 -0.33 3.08 16 36 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 37 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 38 H 0.10 1.88 5.35 -52.48 -0.28 1.60 16 39 H 0.13 1.89 7.64 -52.49 -0.40 1.49 16 40 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 LS Contribution 333.70 15.07 5.03 5.03 Total: -1.00 -28.43 333.70 -9.77 -38.19 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -5.45 Total: 7.01 kcal Atomic # 6 Polarization: -32.20 SS G_CDS: -4.75 Total: -36.95 kcal Atomic # 7 Polarization: -21.19 SS G_CDS: 0.60 Total: -20.59 kcal Atomic # 8 Polarization: -6.47 SS G_CDS: -0.17 Total: -6.64 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.95 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.43 -9.77 -38.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225268152.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.867 kcal (2) G-P(sol) polarization free energy of solvation -28.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds