Wall clock time and date at job start Tue Mar 31 2020 05:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38146 * 120.03281 * 2 1 4 4 C 1.38264 * 120.05965 * 180.29739 * 3 2 1 5 5 C 1.38265 * 120.10838 * 359.68090 * 4 3 2 6 6 C 1.38144 * 120.05765 * 0.02562 * 5 4 3 7 7 C 1.50702 * 120.02879 * 180.02562 * 6 5 4 8 8 C 1.38724 * 119.94293 * 0.02562 * 6 5 4 9 9 O 1.35905 * 120.05481 * 180.02562 * 8 6 5 10 10 C 1.42899 * 116.99751 * 96.90695 * 9 8 6 11 11 H 1.08994 * 109.47736 * 23.72482 * 10 9 8 12 12 C 1.50703 * 109.47058 * 263.72572 * 10 9 8 13 13 H 1.08005 * 119.99649 * 305.01986 * 12 10 9 14 14 C 1.37878 * 120.00291 * 125.01041 * 12 10 9 15 15 N 1.31513 * 119.99755 * 5.23275 * 14 12 10 16 16 Si 1.86803 * 120.00273 * 185.22932 * 14 12 10 17 17 H 1.48504 * 109.46832 * 90.00011 * 16 14 12 18 18 H 1.48490 * 109.47016 * 210.00334 * 16 14 12 19 19 H 1.48497 * 109.46903 * 330.00608 * 16 14 12 20 20 C 1.50704 * 109.47276 * 143.73311 * 10 9 8 21 21 C 1.38229 * 119.99910 * 35.67484 * 20 10 9 22 22 C 1.38240 * 119.99824 * 179.81585 * 21 20 10 23 23 C 1.38237 * 119.99902 * 0.39492 * 22 21 20 24 24 C 1.38238 * 119.99937 * 359.86279 * 23 22 21 25 25 C 1.38232 * 120.00193 * 359.94725 * 24 23 22 26 26 H 1.08997 * 109.47566 * 270.29841 * 1 2 3 27 27 H 1.09003 * 109.46632 * 30.29774 * 1 2 3 28 28 H 1.09004 * 109.47116 * 150.29523 * 1 2 3 29 29 H 1.08005 * 119.97006 * 359.97438 * 3 2 1 30 30 H 1.07996 * 119.94387 * 179.70179 * 4 3 2 31 31 H 1.08004 * 119.96962 * 180.02562 * 5 4 3 32 32 H 1.09003 * 109.46906 * 275.83510 * 7 6 5 33 33 H 1.09002 * 109.46655 * 35.83373 * 7 6 5 34 34 H 1.09003 * 109.47007 * 155.83502 * 7 6 5 35 35 H 0.97003 * 120.00219 * 179.97438 * 15 14 12 36 36 H 1.07994 * 120.00264 * 0.02562 * 21 20 10 37 37 H 1.07998 * 120.00228 * 180.22838 * 22 21 20 38 38 H 1.07998 * 119.99912 * 179.83569 * 23 22 21 39 39 H 1.07997 * 119.99997 * 179.97438 * 24 23 22 40 40 H 1.07996 * 120.00532 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1960 0.0000 4 6 3.5810 1.1966 -0.0062 5 6 4.2752 0.0009 -0.0058 6 6 3.5885 -1.1978 0.0003 7 6 4.3458 -2.5008 0.0014 8 6 2.2013 -1.2011 0.0055 9 8 1.5234 -2.3790 0.0120 10 6 1.0719 -2.8606 1.2794 11 1 0.9762 -2.0250 1.9726 12 6 2.0671 -3.8530 1.8233 13 1 2.3532 -4.7102 1.2319 14 6 2.6125 -3.6665 3.0758 15 7 2.1892 -2.6814 3.8373 16 14 3.9527 -4.8132 3.6912 17 1 5.2813 -4.2740 3.3048 18 1 3.8726 -4.9195 5.1701 19 1 3.7695 -6.1575 3.0876 20 6 -0.2672 -3.5317 1.1137 21 6 -0.5411 -4.2543 -0.0324 22 6 -1.7681 -4.8731 -0.1827 23 6 -2.7241 -4.7625 0.8096 24 6 -2.4522 -4.0353 1.9534 25 6 -1.2238 -3.4198 2.1055 26 1 -0.3634 0.0054 1.0276 27 1 -0.3633 0.8874 -0.5185 28 1 -0.3633 -0.8927 -0.5093 29 1 1.6584 2.1314 -0.0004 30 1 4.1196 2.1327 -0.0111 31 1 5.3552 0.0040 -0.0102 32 1 4.6149 -2.7654 -1.0212 33 1 5.2509 -2.3944 0.5994 34 1 3.7192 -3.2848 0.4268 35 1 2.5726 -2.5504 4.7187 36 1 0.2047 -4.3383 -0.8089 37 1 -1.9807 -5.4408 -1.0765 38 1 -3.6837 -5.2437 0.6910 39 1 -3.1992 -3.9485 2.7285 40 1 -1.0111 -2.8521 2.9992 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225983278.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:21 Heat of formation + Delta-G solvation = -2.835543 kcal Electronic energy + Delta-G solvation = -22290.766990 eV Core-core repulsion = 19227.992990 eV Total energy + Delta-G solvation = -3062.773999 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.42101 -38.31380 -36.21749 -33.13548 -32.81438 -31.10903 -30.16194 -29.98075 -27.11715 -26.12297 -25.77710 -23.36655 -21.83085 -21.02223 -20.15517 -20.11506 -16.91896 -16.68605 -16.18429 -15.21144 -14.92381 -14.65501 -14.52523 -13.93509 -13.61670 -13.26716 -12.86484 -12.73454 -12.59875 -12.43952 -12.32907 -12.06388 -12.01539 -11.55833 -11.29598 -11.20601 -10.97754 -10.88534 -10.85046 -10.58523 -10.49675 -10.28607 -10.05069 -9.38364 -8.80661 -8.63354 -8.15705 -7.93900 -7.87762 -7.57026 -6.29527 -4.35281 1.94577 2.00686 2.17568 2.22709 3.17647 3.25019 3.28167 4.16048 4.24622 4.62937 4.97519 5.13632 5.41662 5.45537 5.57084 5.58119 5.66543 5.75878 5.80057 6.04192 6.09522 6.17756 6.23125 6.27511 6.34245 6.38870 6.42760 6.45243 6.61271 6.74206 6.78220 6.88608 7.04704 7.08235 7.08974 7.21018 7.21837 7.33869 7.44360 7.48331 7.61963 7.69182 7.81368 8.00765 8.56068 8.97329 9.30239 10.73865 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.012016 B = 0.008555 C = 0.005878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.715034 B = 3272.205397 C = 4761.993494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.120 4.120 3 C -0.120 4.120 4 C -0.142 4.142 5 C -0.121 4.121 6 C -0.088 4.088 7 C -0.125 4.125 8 C 0.142 3.858 9 O -0.352 6.352 10 C 0.232 3.768 11 H 0.073 0.927 12 C -0.518 4.518 13 H 0.066 0.934 14 C 0.077 3.923 15 N -0.875 5.875 16 Si 0.893 3.107 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.269 1.269 20 C -0.031 4.031 21 C -0.111 4.111 22 C -0.130 4.130 23 C -0.149 4.149 24 C -0.127 4.127 25 C -0.114 4.114 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.052 0.948 33 H 0.049 0.951 34 H 0.111 0.889 35 H 0.269 0.731 36 H 0.118 0.882 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.110 0.890 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.485 3.105 -5.313 6.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.120 4.120 3 C -0.138 4.138 4 C -0.160 4.160 5 C -0.139 4.139 6 C -0.088 4.088 7 C -0.181 4.181 8 C 0.097 3.903 9 O -0.271 6.271 10 C 0.180 3.820 11 H 0.091 0.909 12 C -0.555 4.555 13 H 0.084 0.916 14 C -0.129 4.129 15 N -0.511 5.511 16 Si 0.719 3.281 17 H -0.199 1.199 18 H -0.209 1.209 19 H -0.193 1.193 20 C -0.032 4.032 21 C -0.129 4.129 22 C -0.148 4.148 23 C -0.168 4.168 24 C -0.145 4.145 25 C -0.132 4.132 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.131 0.869 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.129 0.871 35 H 0.079 0.921 36 H 0.136 0.864 37 H 0.126 0.874 38 H 0.125 0.875 39 H 0.128 0.872 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.521 3.060 -5.263 6.590 hybrid contribution 0.847 -0.448 0.767 1.228 sum -1.674 2.612 -4.496 5.463 Atomic orbital electron populations 1.20613 0.91435 1.02093 1.02027 1.20217 0.96346 0.92963 1.02488 1.20714 0.94047 0.96631 1.02449 1.20859 0.94176 0.97371 1.03588 1.20814 0.99044 0.91936 1.02148 1.20156 0.93451 0.95683 0.99531 1.20999 0.99975 0.96615 1.00551 1.18318 0.89504 0.85655 0.96778 1.85908 1.72305 1.34290 1.34558 1.19192 0.87586 0.94994 0.80230 0.90888 1.21272 1.23877 1.09271 1.01057 0.91623 1.25026 0.96237 0.95094 0.96505 1.69859 1.41297 1.29945 1.10027 0.86564 0.82125 0.81297 0.78094 1.19949 1.20925 1.19344 1.20345 0.94569 0.95613 0.92648 1.20972 0.96297 0.97518 0.98101 1.21011 0.94501 1.00600 0.98688 1.20859 0.98977 1.01703 0.95211 1.20958 0.97023 0.98953 0.97532 1.20970 0.92641 1.00440 0.99179 0.91669 0.92582 0.91099 0.86915 0.87033 0.86889 0.92897 0.93155 0.87110 0.92131 0.86359 0.87369 0.87500 0.87237 0.86232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.84 9.58 36.00 0.35 -1.49 16 2 C -0.12 -2.34 5.89 -104.47 -0.62 -2.96 16 3 C -0.12 -2.08 9.70 -39.61 -0.38 -2.47 16 4 C -0.14 -2.37 10.04 -39.56 -0.40 -2.77 16 5 C -0.12 -2.20 9.72 -39.61 -0.38 -2.58 16 6 C -0.09 -1.82 5.89 -104.48 -0.62 -2.43 16 7 C -0.13 -2.50 9.85 36.01 0.35 -2.15 16 8 C 0.14 3.10 5.50 -39.22 -0.22 2.89 16 9 O -0.35 -8.10 7.16 -19.44 -0.14 -8.24 16 10 C 0.23 5.59 2.48 -29.03 -0.07 5.51 16 11 H 0.07 1.94 6.56 -51.93 -0.34 1.60 16 12 C -0.52 -13.30 6.20 -34.44 -0.21 -13.51 16 13 H 0.07 1.71 7.65 -52.48 -0.40 1.31 16 14 C 0.08 1.99 5.45 -17.82 -0.10 1.89 16 15 N -0.87 -23.53 12.63 55.43 0.70 -22.83 16 16 Si 0.89 20.27 29.54 -169.99 -5.02 15.25 16 17 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 19 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 20 C -0.03 -0.69 4.98 -104.62 -0.52 -1.21 16 21 C -0.11 -2.23 9.35 -39.58 -0.37 -2.60 16 22 C -0.13 -2.27 10.05 -39.58 -0.40 -2.66 16 23 C -0.15 -2.49 10.05 -39.58 -0.40 -2.88 16 24 C -0.13 -2.24 10.05 -39.58 -0.40 -2.64 16 25 C -0.11 -2.37 9.68 -39.58 -0.38 -2.75 16 26 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.06 0.81 8.09 -51.93 -0.42 0.39 16 28 H 0.07 1.31 7.53 -51.93 -0.39 0.92 16 29 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 30 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 31 H 0.11 1.77 8.06 -52.48 -0.42 1.34 16 32 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.05 0.94 8.12 -51.93 -0.42 0.52 16 34 H 0.11 2.50 4.47 -51.93 -0.23 2.27 16 35 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 36 H 0.12 2.38 7.65 -52.49 -0.40 1.98 16 37 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 38 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 39 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 40 H 0.12 2.56 8.06 -52.49 -0.42 2.14 16 LS Contribution 336.19 15.07 5.07 5.07 Total: -1.00 -27.26 336.19 -9.71 -36.96 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -5.55 Total: 8.61 kcal Atomic # 6 Polarization: -30.05 SS G_CDS: -4.76 Total: -34.82 kcal Atomic # 7 Polarization: -23.53 SS G_CDS: 0.70 Total: -22.83 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: -0.14 Total: -8.24 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -27.26 -9.71 -36.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225983278.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.128 kcal (2) G-P(sol) polarization free energy of solvation -27.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds