Wall clock time and date at job start Tue Mar 31 2020 05:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99553 * 2 1 4 4 H 1.48496 * 109.46862 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47479 * 300.00136 * 3 2 1 6 6 H 1.48497 * 109.47205 * 60.00306 * 3 2 1 7 7 C 1.37870 * 120.00303 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00155 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00149 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47550 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47442 * 180.02562 * 10 9 7 12 12 N 1.46502 * 109.47308 * 180.02562 * 11 10 9 13 13 C 1.34779 * 120.00176 * 179.97438 * 12 11 10 14 14 O 1.21584 * 119.99597 * 359.97438 * 13 12 11 15 15 N 1.34781 * 119.99892 * 179.97438 * 13 12 11 16 16 C 1.46608 * 125.25547 * 0.02562 * 15 13 12 17 17 C 1.53235 * 107.25059 * 196.73103 * 16 15 13 18 18 H 1.09002 * 111.55037 * 215.33973 * 17 16 15 19 19 C 1.50691 * 111.91994 * 89.56927 * 17 16 15 20 20 O 1.20823 * 125.07514 * 68.65326 * 19 17 16 21 21 O 1.34200 * 109.80656 * 249.95521 * 19 17 16 22 22 C 1.45788 * 109.62806 * 338.07820 * 21 19 17 23 23 C 1.54908 * 104.53859 * 31.71320 * 22 21 19 24 24 H 1.09002 * 114.48001 * 209.49797 * 23 22 21 25 25 C 1.46415 * 125.25421 * 179.97438 * 15 13 12 26 26 H 0.97004 * 120.00476 * 359.97438 * 1 2 3 27 27 H 1.09009 * 109.46738 * 60.00426 * 9 7 2 28 28 H 1.08997 * 109.47344 * 300.00684 * 9 7 2 29 29 H 1.09008 * 109.46786 * 59.99783 * 10 9 7 30 30 H 1.08997 * 109.47147 * 300.00549 * 10 9 7 31 31 H 1.08995 * 109.47597 * 59.99672 * 11 10 9 32 32 H 1.09003 * 109.46555 * 299.99671 * 11 10 9 33 33 H 0.97006 * 119.99809 * 359.97438 * 12 11 10 34 34 H 1.09003 * 109.88078 * 77.32087 * 16 15 13 35 35 H 1.08998 * 109.88222 * 316.14725 * 16 15 13 36 36 H 1.09000 * 110.42032 * 272.94575 * 22 21 19 37 37 H 1.08999 * 110.42328 * 150.48195 * 22 21 19 38 38 H 1.09003 * 109.69149 * 57.55149 * 25 15 13 39 39 H 1.09002 * 109.63079 * 297.05495 * 25 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4805 -4.9870 -0.0012 12 7 2.4325 -6.1005 -0.0006 13 6 1.9833 -7.3713 -0.0005 14 8 0.7880 -7.5934 -0.0004 15 7 2.8593 -8.3957 -0.0004 16 6 4.3191 -8.2608 0.0001 17 6 4.9007 -9.6144 -0.4213 18 1 5.8328 -9.8298 0.1010 19 6 5.0678 -9.7142 -1.9156 20 8 5.8652 -9.0838 -2.5687 21 8 4.1793 -10.5871 -2.4153 22 6 3.7391 -11.4945 -1.3626 23 6 3.7940 -10.6448 -0.0686 24 1 3.9950 -11.2153 0.8382 25 6 2.4998 -9.8150 0.0002 26 1 -0.4851 0.8400 0.0004 27 1 0.6242 -2.5567 -0.8904 28 1 0.6248 -2.5571 0.8896 29 1 2.8721 -3.6042 0.8895 30 1 2.8721 -3.6042 -0.8904 31 1 0.8541 -5.0446 -0.8913 32 1 0.8536 -5.0450 0.8887 33 1 3.3862 -5.9232 -0.0002 34 1 4.6672 -8.0029 1.0003 35 1 4.6205 -7.4905 -0.7098 36 1 4.4152 -12.3462 -1.2874 37 1 2.7204 -11.8322 -1.5530 38 1 1.8755 -10.0362 -0.8655 39 1 1.9575 -10.0550 0.9149 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227026320.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:13 Heat of formation + Delta-G solvation = -112.654254 kcal Electronic energy + Delta-G solvation = -21875.145393 eV Core-core repulsion = 18396.760034 eV Total energy + Delta-G solvation = -3478.385359 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.11150 -39.86564 -38.10045 -37.04931 -35.38804 -33.41396 -32.55505 -31.02242 -30.66373 -27.25635 -26.24553 -24.96366 -22.97449 -21.78326 -21.25509 -20.61043 -19.94747 -18.33619 -17.81930 -17.16364 -16.75096 -16.33341 -15.89534 -15.68282 -14.95547 -14.64394 -14.56855 -14.38048 -14.06310 -13.72112 -13.50771 -13.11417 -13.00037 -12.31117 -12.23342 -12.03468 -11.97825 -11.79340 -11.69152 -11.12276 -10.91389 -10.72875 -10.60647 -10.56184 -10.20049 -9.86411 -9.45313 -9.10614 -9.06319 -8.59570 -8.36646 -6.01077 -4.04072 1.57700 2.47173 2.74067 3.18943 3.26697 3.30840 3.38338 3.41191 3.42026 3.68034 3.99212 4.03854 4.40435 4.45614 4.57028 4.72641 4.80446 4.86641 5.07494 5.15339 5.34002 5.34845 5.38449 5.65429 5.80195 5.96204 6.17352 6.23861 6.48255 6.61523 6.77205 6.96683 6.99293 7.01896 7.64724 7.77064 7.96080 7.97877 8.38723 8.61941 9.02800 9.60189 11.10262 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.030562 B = 0.002913 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.957576 B = 9609.231667 C =10175.680398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.121 4.121 11 C 0.134 3.866 12 N -0.737 5.737 13 C 0.721 3.279 14 O -0.584 6.584 15 N -0.640 5.640 16 C 0.118 3.882 17 C -0.162 4.162 18 H 0.139 0.861 19 C 0.491 3.509 20 O -0.445 6.445 21 O -0.339 6.339 22 C 0.058 3.942 23 C -0.129 4.129 24 H 0.134 0.866 25 C 0.128 3.872 26 H 0.261 0.739 27 H 0.020 0.980 28 H 0.019 0.981 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.394 0.606 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.119 0.881 38 H 0.076 0.924 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.620 -26.276 2.037 28.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.159 4.159 11 C 0.011 3.989 12 N -0.391 5.391 13 C 0.422 3.578 14 O -0.461 6.461 15 N -0.380 5.380 16 C -0.005 4.005 17 C -0.182 4.182 18 H 0.156 0.844 19 C 0.330 3.670 20 O -0.327 6.327 21 O -0.255 6.255 22 C -0.016 4.016 23 C -0.148 4.148 24 H 0.152 0.848 25 C 0.004 3.996 26 H 0.070 0.930 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.228 0.772 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.110 0.890 37 H 0.137 0.863 38 H 0.094 0.906 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.782 -25.924 1.491 27.748 hybrid contribution 0.966 0.998 0.166 1.399 sum 10.748 -24.926 1.657 27.196 Atomic orbital electron populations 1.69976 1.06056 1.26578 1.50673 1.25030 0.94857 0.99315 0.95290 0.86525 0.80060 0.83754 0.77590 1.19749 1.20998 1.21009 1.21239 0.93038 0.90919 1.50781 0.92586 1.19031 0.93835 0.90782 0.97716 1.21898 0.99827 0.93243 1.00896 1.21567 0.91259 0.84032 1.02033 1.45439 1.10656 1.04200 1.78849 1.15445 0.84173 0.80081 0.78051 1.90938 1.13434 1.83654 1.58106 1.47220 1.05171 1.05573 1.80042 1.21508 0.81075 0.95377 1.02580 1.23095 1.01923 0.97706 0.95508 0.84367 1.22678 0.77469 0.77547 0.89316 1.90756 1.31583 1.43008 1.67337 1.87150 1.55255 1.44038 1.39085 1.24326 1.02998 0.90915 0.83389 1.23611 0.94543 0.96616 1.00025 0.84787 1.21690 0.95181 0.79263 1.03448 0.92980 0.96206 0.96219 0.92723 0.92721 0.91806 0.91760 0.77229 0.89690 0.89945 0.88957 0.86300 0.90587 0.90547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.98 13.29 55.43 0.74 -26.24 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 10 C -0.12 -2.39 5.27 -26.74 -0.14 -2.53 16 11 C 0.13 2.43 5.67 -4.04 -0.02 2.40 16 12 N -0.74 -11.16 5.51 -65.23 -0.36 -11.52 16 13 C 0.72 11.32 8.47 -86.91 -0.74 10.59 16 14 O -0.58 -11.52 16.65 5.29 0.09 -11.44 16 15 N -0.64 -7.13 3.30 -178.70 -0.59 -7.72 16 16 C 0.12 0.94 5.91 -3.86 -0.02 0.92 16 17 C -0.16 -0.95 3.76 -90.45 -0.34 -1.29 16 18 H 0.14 0.42 8.14 -51.93 -0.42 0.00 16 19 C 0.49 4.85 7.82 36.00 0.28 5.13 16 20 O -0.44 -6.10 18.00 -18.40 -0.33 -6.43 16 21 O -0.34 -3.14 11.05 -38.83 -0.43 -3.57 16 22 C 0.06 0.23 7.06 38.16 0.27 0.50 16 23 C -0.13 -0.51 4.42 -87.95 -0.39 -0.90 16 24 H 0.13 0.12 8.14 -51.93 -0.42 -0.31 16 25 C 0.13 1.03 6.37 -3.62 -0.02 1.00 16 26 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 27 H 0.02 0.54 8.14 -51.92 -0.42 0.11 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 1.03 8.14 -51.92 -0.42 0.61 16 30 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.39 4.94 7.07 -40.82 -0.29 4.65 16 34 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.75 7.35 -51.93 -0.38 0.37 16 36 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 37 H 0.12 0.31 7.61 -51.93 -0.39 -0.08 16 38 H 0.08 0.69 7.25 -51.93 -0.38 0.31 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 327.83 15.07 4.94 4.94 Total: -1.00 -36.97 327.83 -8.27 -45.24 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -5.63 Total: -2.72 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: -1.67 Total: 2.84 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: -0.21 Total: -45.48 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -0.67 Total: -21.43 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -36.97 -8.27 -45.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227026320.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.413 kcal (2) G-P(sol) polarization free energy of solvation -36.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds